Wall clock time and date at job start Tue Mar 31 2020 15:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46807 * 2 1 4 4 C 1.52995 * 109.47364 * 119.99908 * 2 1 3 5 5 H 1.08997 * 109.47154 * 59.99764 * 4 2 1 6 6 O 1.45200 * 109.47360 * 300.00334 * 4 2 1 7 7 C 1.34702 * 117.00354 * 89.99619 * 6 4 2 8 8 O 1.21471 * 119.99672 * 0.02562 * 7 6 4 9 9 C 1.47765 * 120.00449 * 180.02562 * 7 6 4 10 10 C 1.39966 * 120.03133 * 359.72207 * 9 7 6 11 11 C 1.38315 * 120.35512 * 179.76686 * 10 9 7 12 12 C 1.37754 * 120.41868 * 0.51427 * 11 10 9 13 13 C 1.40751 * 120.05004 * 359.74551 * 12 11 10 14 14 C 1.41440 * 120.17819 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99811 * 24.44081 * 14 13 12 16 16 C 1.39936 * 120.00379 * 204.43574 * 14 13 12 17 17 N 1.30832 * 119.99399 * 17.88362 * 16 14 13 18 18 Si 1.86796 * 120.00316 * 197.88040 * 16 14 13 19 19 H 1.48499 * 109.47148 * 90.00251 * 18 16 14 20 20 H 1.48497 * 109.47027 * 210.00395 * 18 16 14 21 21 H 1.48505 * 109.47092 * 330.00432 * 18 16 14 22 22 C 1.39053 * 120.03153 * 180.02562 * 9 7 6 23 23 C 1.50700 * 109.47459 * 180.02562 * 4 2 1 24 24 C 1.38226 * 119.61915 * 124.97710 * 23 4 2 25 25 C 1.38630 * 119.15982 * 179.79457 * 24 23 4 26 26 C 1.38679 * 118.41791 * 0.47267 * 25 24 23 27 27 C 1.38182 * 119.16299 * 359.50417 * 26 25 24 28 28 N 1.31852 * 119.61280 * 305.00118 * 23 4 2 29 29 H 1.09001 * 109.47027 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46984 * 299.99634 * 1 2 3 31 31 H 1.08995 * 109.47410 * 59.99880 * 1 2 3 32 32 H 1.08992 * 109.47090 * 240.00354 * 2 1 3 33 33 H 1.08997 * 109.46987 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47233 * 300.00228 * 3 2 1 35 35 H 1.09004 * 109.46852 * 59.99902 * 3 2 1 36 36 H 1.08001 * 119.82169 * 0.02562 * 10 9 7 37 37 H 1.08005 * 119.79021 * 180.26156 * 11 10 9 38 38 H 1.08004 * 119.97784 * 179.76655 * 12 11 10 39 39 H 0.97007 * 119.99388 * 179.97438 * 17 16 14 40 40 H 1.07997 * 120.20711 * 359.95257 * 22 9 7 41 41 H 1.07993 * 120.42169 * 0.03979 * 24 23 4 42 42 H 1.07996 * 120.78871 * 180.23632 * 25 24 23 43 43 H 1.08000 * 120.41364 * 179.78547 * 26 25 24 44 44 H 1.07996 * 119.61311 * 180.25542 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -1.7488 1.2493 6 8 1.5560 -0.0368 2.4348 7 6 0.3722 -0.4414 2.9341 8 8 -0.2388 -1.3418 2.3942 9 6 -0.1831 0.2098 4.1387 10 6 0.5232 1.2434 4.7648 11 6 0.0074 1.8609 5.8898 12 6 -1.2018 1.4592 6.4134 13 6 -1.9241 0.4180 5.8009 14 6 -3.1662 0.0037 6.3359 15 1 -3.7520 0.6873 6.9325 16 6 -3.6360 -1.2916 6.0920 17 7 -2.8100 -2.2213 5.6857 18 14 -5.4424 -1.6934 6.3468 19 1 -6.1857 -1.4535 5.0838 20 1 -5.5818 -3.1185 6.7401 21 1 -5.9957 -0.8275 7.4189 22 6 -1.4048 -0.2078 4.6550 23 6 3.5470 -0.7207 1.2495 24 6 4.2298 -0.2123 2.3386 25 6 5.6160 -0.2204 2.3307 26 6 6.2667 -0.7328 1.2184 27 6 5.5170 -1.2243 0.1668 28 7 4.1990 -1.2047 0.2107 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6765 1.9564 0.8900 36 1 1.4741 1.5632 4.3648 37 1 0.5581 2.6603 6.3632 38 1 -1.5961 1.9438 7.2944 39 1 -3.1357 -3.1194 5.5170 40 1 -1.9515 -1.0077 4.1778 41 1 3.6902 0.1826 3.1866 42 1 6.1759 0.1666 3.1692 43 1 7.3457 -0.7517 1.1765 44 1 6.0162 -1.6289 -0.7013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733689593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:55 Heat of formation + Delta-G solvation = -54.991276 kcal Electronic energy + Delta-G solvation = -27250.650962 eV Core-core repulsion = 23517.743457 eV Total energy + Delta-G solvation = -3732.907504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03903 -40.92803 -39.28172 -37.85235 -35.98714 -35.56383 -33.39439 -32.63858 -32.10198 -31.35691 -28.17331 -28.11881 -27.21789 -25.12496 -24.34284 -23.31222 -22.85556 -21.71541 -20.79216 -19.66134 -18.56820 -18.09382 -17.65899 -17.35318 -16.83000 -16.66337 -16.52668 -16.11903 -15.50809 -15.49331 -15.14187 -15.05701 -14.62363 -14.41717 -14.27348 -14.03529 -13.90230 -13.54655 -13.32253 -13.10805 -13.04313 -12.87257 -12.78472 -12.58933 -12.54938 -12.21838 -12.04217 -11.94132 -11.89650 -11.54861 -11.53114 -11.25018 -11.10438 -10.81989 -10.40193 -9.92531 -9.61448 -9.44489 -8.69446 -6.40257 0.10668 0.14586 0.34520 0.96633 1.37042 1.46108 1.50961 1.51500 1.81749 2.18267 2.71728 2.79130 3.14985 3.59650 3.63926 3.67722 3.84938 3.93518 4.06054 4.12922 4.22379 4.27560 4.35894 4.44761 4.56916 4.61186 4.62572 4.66593 4.80042 4.85674 4.87368 4.92765 5.01444 5.04595 5.11826 5.15558 5.23100 5.26211 5.27657 5.33071 5.40932 5.46105 5.76430 5.81931 5.89441 6.01237 6.23052 6.52838 6.81819 6.86778 6.89005 6.96340 8.27767 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018079 B = 0.003217 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.356084 B = 8701.284786 C = 9177.920610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.132 4.132 4 C 0.141 3.859 5 H 0.075 0.925 6 O -0.334 6.334 7 C 0.518 3.482 8 O -0.535 6.535 9 C -0.125 4.125 10 C -0.181 4.181 11 C -0.098 4.098 12 C -0.205 4.205 13 C 0.067 3.933 14 C -0.494 4.494 15 H 0.087 0.913 16 C 0.031 3.969 17 N -0.825 5.825 18 Si 0.982 3.018 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.250 1.250 22 C -0.122 4.122 23 C 0.115 3.885 24 C -0.168 4.168 25 C -0.074 4.074 26 C -0.164 4.164 27 C 0.092 3.908 28 N -0.499 5.499 29 H 0.046 0.954 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.114 0.886 39 H 0.287 0.713 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.163 0.837 43 H 0.173 0.827 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.668 4.575 -8.725 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 C -0.190 4.190 4 C 0.085 3.915 5 H 0.093 0.907 6 O -0.250 6.250 7 C 0.366 3.634 8 O -0.427 6.427 9 C -0.127 4.127 10 C -0.200 4.200 11 C -0.116 4.116 12 C -0.224 4.224 13 C 0.064 3.936 14 C -0.523 4.523 15 H 0.105 0.895 16 C -0.184 4.184 17 N -0.451 5.451 18 Si 0.803 3.197 19 H -0.191 1.191 20 H -0.195 1.195 21 H -0.173 1.173 22 C -0.142 4.142 23 C -0.021 4.021 24 C -0.188 4.188 25 C -0.100 4.100 26 C -0.183 4.183 27 C -0.065 4.065 28 N -0.209 5.209 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.153 0.847 42 H 0.181 0.819 43 H 0.190 0.810 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 15.049 3.729 -9.648 18.261 hybrid contribution -0.680 -0.499 0.851 1.198 sum 14.370 3.230 -8.797 17.155 Atomic orbital electron populations 1.21877 0.95054 1.01586 1.01499 1.21413 0.95547 0.97935 0.96032 1.21683 1.00506 0.94427 1.02352 1.21211 0.89785 0.96794 0.83723 0.90713 1.86517 1.36015 1.59509 1.42945 1.21585 0.78582 0.80013 0.83229 1.90752 1.60379 1.30776 1.60744 1.19051 0.97548 1.01024 0.95050 1.20938 1.01124 0.98704 0.99260 1.20945 0.95467 0.99417 0.95723 1.21496 0.96772 1.02587 1.01579 1.17890 0.93390 0.91910 0.90373 1.19864 1.03863 0.98269 1.30281 0.89493 1.26839 1.04121 0.95456 0.92007 1.69876 1.38150 1.03435 1.33622 0.85191 0.76422 0.78298 0.79795 1.19108 1.19515 1.17330 1.21454 0.95016 1.01221 0.96464 1.20444 0.93620 0.96524 0.91521 1.22090 0.96266 1.00820 0.99630 1.22001 0.93227 0.95440 0.99284 1.22575 1.03272 0.98663 0.93807 1.23310 0.88053 0.95561 0.99567 1.67175 1.11832 1.15993 1.25948 0.93443 0.95217 0.90333 0.88013 0.92823 0.90902 0.93149 0.84986 0.84163 0.86768 0.90220 0.87695 0.84730 0.81912 0.80951 0.79553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 7.79 71.98 0.56 -4.06 16 2 C -0.09 -2.63 2.68 -10.79 -0.03 -2.66 16 3 C -0.13 -3.38 8.80 71.98 0.63 -2.75 16 4 C 0.14 4.66 2.48 29.85 0.07 4.74 16 5 H 0.07 2.84 7.16 -2.39 -0.02 2.82 16 6 O -0.33 -12.34 6.77 -56.12 -0.38 -12.72 16 7 C 0.52 23.33 6.17 70.34 0.43 23.76 16 8 O -0.54 -26.66 13.51 19.93 0.27 -26.39 16 9 C -0.13 -6.02 5.87 -20.14 -0.12 -6.14 16 10 C -0.18 -7.45 9.62 22.71 0.22 -7.23 16 11 C -0.10 -3.88 10.01 22.17 0.22 -3.65 16 12 C -0.20 -9.36 9.78 22.77 0.22 -9.14 16 13 C 0.07 3.54 5.57 -21.32 -0.12 3.42 16 14 C -0.49 -26.23 9.05 23.47 0.21 -26.02 16 15 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 16 C 0.03 1.58 5.14 85.25 0.44 2.02 16 17 N -0.83 -45.11 10.96 21.82 0.24 -44.87 16 18 Si 0.98 38.91 29.60 68.60 2.03 40.94 16 19 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 22 C -0.12 -6.64 8.24 23.02 0.19 -6.45 16 23 C 0.12 3.28 4.91 42.55 0.21 3.48 16 24 C -0.17 -4.24 9.42 22.36 0.21 -4.03 16 25 C -0.07 -1.30 10.18 22.47 0.23 -1.07 16 26 C -0.16 -2.34 10.11 22.36 0.23 -2.11 16 27 C 0.09 1.64 11.18 84.67 0.95 2.59 16 28 N -0.50 -12.75 9.88 -183.89 -1.82 -14.57 16 29 H 0.05 1.68 7.50 -2.39 -0.02 1.66 16 30 H 0.03 1.10 6.16 -2.39 -0.01 1.08 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.10 2.75 7.95 -2.39 -0.02 2.73 16 33 H 0.05 1.32 7.21 -2.39 -0.02 1.30 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.41 7.68 -2.39 -0.02 1.39 16 36 H 0.13 4.61 7.59 -2.91 -0.02 4.59 16 37 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 38 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 39 H 0.29 14.48 8.30 -92.70 -0.77 13.71 16 40 H 0.11 6.31 5.74 -2.91 -0.02 6.29 16 41 H 0.13 3.61 7.00 -2.91 -0.02 3.59 16 42 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 43 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 44 H 0.19 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -65.86 365.79 6.11 -59.75 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 1.01 Total: 33.16 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 4.76 Total: -35.30 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -1.58 Total: -59.44 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.11 Total: -39.11 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -65.86 6.11 -59.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733689593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.754 kcal (2) G-P(sol) polarization free energy of solvation -65.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds