Wall clock time and date at job start Tue Mar 31 2020 15:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17389 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47347 * 243.69587 * 3 2 1 5 5 H 1.08995 * 109.47202 * 54.65052 * 4 3 2 6 6 O 1.45202 * 109.47172 * 294.64917 * 4 3 2 7 7 C 1.34869 * 116.99860 * 141.40890 * 6 4 3 8 8 O 1.21590 * 120.00344 * 357.06743 * 7 6 4 9 9 C 1.46711 * 119.99608 * 177.07183 * 7 6 4 10 10 C 1.36221 * 125.44645 * 185.07606 * 9 7 6 11 11 C 1.41661 * 107.74233 * 180.27445 * 10 9 7 12 12 C 1.40038 * 133.33793 * 179.76339 * 11 10 9 13 13 C 1.36570 * 119.83135 * 180.02562 * 12 11 10 14 14 C 1.38864 * 120.60102 * 359.95405 * 13 12 11 15 15 C 1.37841 * 120.63486 * 0.02562 * 14 13 12 16 16 C 1.39092 * 119.81819 * 0.02562 * 15 14 13 17 17 N 1.37820 * 133.15125 * 179.97438 * 16 15 14 18 18 C 1.36875 * 125.61997 * 359.97438 * 17 16 15 19 19 H 1.08002 * 119.99886 * 221.68955 * 18 17 16 20 20 C 1.39026 * 120.00154 * 41.68830 * 18 17 16 21 21 N 1.31345 * 119.99848 * 202.09915 * 20 18 17 22 22 Si 1.86799 * 119.99951 * 22.09467 * 20 18 17 23 23 H 1.48497 * 109.47171 * 265.53669 * 22 20 18 24 24 H 1.48500 * 109.46992 * 25.53525 * 22 20 18 25 25 H 1.48496 * 109.46936 * 145.53548 * 22 20 18 26 26 C 1.52999 * 109.47366 * 174.65466 * 4 3 2 27 27 C 1.53004 * 109.47233 * 174.71747 * 26 4 3 28 28 C 1.53003 * 109.46949 * 294.71153 * 26 4 3 29 29 H 4.44641 * 5.63397 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.47199 * 123.69464 * 3 2 1 31 31 H 1.08999 * 109.47521 * 3.69789 * 3 2 1 32 32 H 1.07998 * 126.12810 * 359.97438 * 10 9 7 33 33 H 1.08005 * 120.08808 * 359.96022 * 12 11 10 34 34 H 1.08002 * 119.69918 * 179.97438 * 13 12 11 35 35 H 1.07996 * 119.68029 * 180.02562 * 14 13 12 36 36 H 1.08000 * 120.08616 * 179.97438 * 15 14 13 37 37 H 0.96996 * 119.99855 * 174.98073 * 21 20 18 38 38 H 1.09001 * 109.47496 * 54.71438 * 26 4 3 39 39 H 1.09001 * 109.47028 * 178.23659 * 27 26 4 40 40 H 1.09001 * 109.46756 * 298.22958 * 27 26 4 41 41 H 1.08994 * 109.47232 * 58.23157 * 27 26 4 42 42 H 1.08998 * 109.46865 * 60.00117 * 28 26 4 43 43 H 1.09000 * 109.47312 * 179.97438 * 28 26 4 44 44 H 1.09001 * 109.47254 * 300.00433 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1556 0.6401 1.2931 5 1 2.7165 0.1281 2.1493 6 8 2.7781 2.0419 1.3214 7 6 2.3950 2.5488 2.5110 8 8 2.3259 1.8259 3.4862 9 6 2.0614 3.9727 2.6284 10 6 1.7580 4.6200 3.7879 11 6 1.4930 5.9747 3.4694 12 6 1.1319 7.0894 4.2363 13 6 0.9399 8.2979 3.6298 14 6 1.1003 8.4334 2.2572 15 6 1.4557 7.3510 1.4813 16 6 1.6558 6.1096 2.0760 17 7 2.0069 4.8725 1.5803 18 6 2.2558 4.5817 0.2662 19 1 1.8809 3.6649 -0.1644 20 6 2.9912 5.4664 -0.5144 21 7 2.8771 5.4389 -1.8226 22 14 4.1414 6.6942 0.2973 23 1 3.4336 7.9859 0.4857 24 1 4.5736 6.1695 1.6176 25 1 5.3315 6.9031 -0.5659 26 6 4.6798 0.5212 1.3545 27 6 5.2011 1.2745 2.5800 28 6 5.0725 -0.9539 1.4576 29 1 -1.0501 0.0001 -0.0002 30 1 3.0090 0.5709 -0.8550 31 1 3.0097 -1.0247 -0.0663 32 1 1.7208 4.1785 4.7728 33 1 1.0046 6.9935 5.3045 34 1 0.6610 9.1561 4.2233 35 1 0.9450 9.3961 1.7931 36 1 1.5776 7.4663 0.4144 37 1 3.3333 6.1026 -2.3632 38 1 5.1145 0.9508 0.4519 39 1 6.2838 1.1637 2.6412 40 1 4.9486 2.3312 2.4914 41 1 4.7425 0.8655 3.4802 42 1 4.7011 -1.4906 0.5846 43 1 6.1584 -1.0387 1.5009 44 1 4.6378 -1.3835 2.3602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747195288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:01 Heat of formation + Delta-G solvation = 21.708812 kcal Electronic energy + Delta-G solvation = -28115.389783 eV Core-core repulsion = 24385.808244 eV Total energy + Delta-G solvation = -3729.581539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84884 -39.75424 -37.02525 -36.18153 -34.74729 -33.60090 -33.50763 -31.40663 -29.66719 -29.26908 -28.43818 -26.97406 -24.96538 -24.56542 -23.12139 -21.18439 -20.76136 -19.93197 -19.29520 -18.35553 -17.94755 -17.38462 -16.06656 -15.83650 -15.63930 -15.23554 -14.60742 -14.45823 -14.26913 -13.84786 -13.72185 -13.52776 -13.27681 -13.09682 -13.01806 -12.78222 -12.55146 -12.27659 -12.08007 -12.01536 -11.60520 -11.49110 -11.41533 -11.03250 -10.99854 -10.94142 -10.73304 -10.54710 -10.29127 -10.20016 -10.09227 -9.89143 -9.84959 -9.61858 -9.49765 -8.71086 -7.43984 -7.04487 -6.93384 -4.53342 1.44590 2.44645 2.67071 2.98087 3.00954 3.08103 3.09602 3.18930 3.27114 3.84426 3.90082 4.09564 4.48589 4.56366 4.76751 4.89915 4.95344 5.07601 5.25531 5.39693 5.51761 5.56438 5.66518 5.68951 5.70745 5.81336 5.85891 5.94730 5.98491 6.03358 6.09106 6.14164 6.19564 6.25585 6.33181 6.40841 6.48845 6.57331 6.71733 6.79862 6.98247 7.14931 7.22707 7.32014 7.55136 7.58807 7.84043 7.88298 8.12822 8.43546 8.67810 8.97876 10.07750 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013034 B = 0.004970 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.659202 B = 5632.270017 C = 6123.828701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 C -0.012 4.012 4 C 0.091 3.909 5 H 0.089 0.911 6 O -0.317 6.317 7 C 0.546 3.454 8 O -0.523 6.523 9 C -0.016 4.016 10 C -0.157 4.157 11 C -0.125 4.125 12 C -0.077 4.077 13 C -0.157 4.157 14 C -0.134 4.134 15 C -0.095 4.095 16 C 0.052 3.948 17 N -0.252 5.252 18 C -0.336 4.336 19 H 0.131 0.869 20 C 0.085 3.915 21 N -0.817 5.817 22 Si 0.865 3.135 23 H -0.243 1.243 24 H -0.255 1.255 25 H -0.280 1.280 26 C -0.108 4.108 27 C -0.150 4.150 28 C -0.146 4.146 29 H 0.215 0.785 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.288 0.712 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -5.272 3.578 6.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.181 4.181 3 C -0.048 4.048 4 C 0.035 3.965 5 H 0.107 0.893 6 O -0.233 6.233 7 C 0.393 3.607 8 O -0.414 6.414 9 C -0.129 4.129 10 C -0.184 4.184 11 C -0.130 4.130 12 C -0.096 4.096 13 C -0.176 4.176 14 C -0.155 4.155 15 C -0.114 4.114 16 C -0.063 4.063 17 N 0.086 4.914 18 C -0.463 4.463 19 H 0.148 0.852 20 C -0.130 4.130 21 N -0.445 5.445 22 Si 0.689 3.311 23 H -0.168 1.168 24 H -0.178 1.178 25 H -0.206 1.206 26 C -0.127 4.127 27 C -0.207 4.207 28 C -0.203 4.203 29 H 0.232 0.768 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.156 0.844 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.046 -5.662 3.210 6.822 hybrid contribution 0.414 0.516 0.077 0.666 sum 2.460 -5.145 3.287 6.582 Atomic orbital electron populations 1.24804 0.95906 1.01264 1.00485 1.22860 0.94354 1.00199 1.00729 1.18957 0.85502 1.01694 0.98684 1.22711 0.94477 0.80792 0.98478 0.89293 1.86973 1.76282 1.26610 1.33394 1.19935 0.72827 0.86905 0.81002 1.90767 1.52527 1.59584 1.38518 1.19201 1.16857 0.88232 0.88596 1.20375 1.09859 0.92003 0.96127 1.17902 1.08614 0.93833 0.92650 1.20151 0.99674 0.91549 0.98218 1.20358 1.05631 0.96941 0.94635 1.20573 1.03731 0.97313 0.93849 1.20208 1.01229 0.90285 0.99680 1.18353 1.06645 0.88093 0.93172 1.40398 1.40819 1.04633 1.05600 1.19523 1.35040 1.10613 0.81167 0.85211 1.25462 0.95634 0.96876 0.95016 1.69659 1.37196 1.32861 1.04824 0.87047 0.80863 0.82448 0.80782 1.16762 1.17846 1.20605 1.21467 0.93958 0.96747 1.00483 1.21851 1.00582 1.00873 0.97436 1.21877 1.01604 0.94821 1.02010 0.76831 0.88066 0.87842 0.84373 0.87104 0.87234 0.86941 0.86356 0.90156 0.89820 0.92517 0.92382 0.92010 0.92253 0.92098 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.26 19.25 29.55 0.57 -2.69 16 2 C -0.18 -3.01 13.11 -37.12 -0.49 -3.50 16 3 C -0.01 -0.18 5.30 -29.52 -0.16 -0.33 16 4 C 0.09 1.49 1.77 -26.73 -0.05 1.44 16 5 H 0.09 1.52 6.86 -51.93 -0.36 1.16 16 6 O -0.32 -6.62 7.08 -40.95 -0.29 -6.91 16 7 C 0.55 12.13 6.39 34.15 0.22 12.35 16 8 O -0.52 -11.55 15.19 -19.33 -0.29 -11.85 16 9 C -0.02 -0.38 6.76 -82.28 -0.56 -0.93 16 10 C -0.16 -3.45 10.55 -39.00 -0.41 -3.86 16 11 C -0.13 -2.75 6.16 -106.90 -0.66 -3.41 16 12 C -0.08 -1.44 10.06 -39.51 -0.40 -1.83 16 13 C -0.16 -2.73 9.97 -39.95 -0.40 -3.13 16 14 C -0.13 -2.52 10.02 -39.49 -0.40 -2.92 16 15 C -0.09 -2.08 6.79 -39.41 -0.27 -2.35 16 16 C 0.05 1.23 5.20 -83.84 -0.44 0.80 16 17 N -0.25 -6.28 2.42 -56.10 -0.14 -6.42 16 18 C -0.34 -8.74 9.04 -15.01 -0.14 -8.87 16 19 H 0.13 3.60 7.19 -52.49 -0.38 3.22 16 20 C 0.09 2.16 4.82 -17.47 -0.08 2.07 16 21 N -0.82 -21.02 13.95 55.50 0.77 -20.25 16 22 Si 0.86 19.97 24.53 -169.99 -4.17 15.80 16 23 H -0.24 -5.32 5.55 56.52 0.31 -5.00 16 24 H -0.25 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.11 -1.50 2.70 -90.62 -0.24 -1.75 16 27 C -0.15 -2.29 8.13 37.16 0.30 -1.99 16 28 C -0.15 -1.53 8.96 37.16 0.33 -1.19 16 29 H 0.21 2.60 7.80 -54.09 -0.42 2.17 16 30 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.10 1.13 6.34 -51.93 -0.33 0.80 16 32 H 0.14 2.71 8.06 -52.49 -0.42 2.29 16 33 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.12 2.66 5.88 -52.49 -0.31 2.35 16 37 H 0.29 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.05 6.84 -51.93 -0.36 0.70 16 41 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 42 H 0.06 0.53 6.46 -51.93 -0.34 0.19 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -29.06 364.29 -7.79 -36.85 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.91 Total: 9.37 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -3.25 Total: -22.09 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.64 Total: -26.66 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.58 Total: -18.76 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.17 Total: 15.80 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.06 -7.79 -36.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747195288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.564 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds