Wall clock time and date at job start Tue Mar 31 2020 15:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17389 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47347 * 243.69587 * 3 2 1 5 5 H 1.08995 * 109.47202 * 54.65052 * 4 3 2 6 6 O 1.45202 * 109.47172 * 294.64917 * 4 3 2 7 7 C 1.34869 * 116.99860 * 141.40890 * 6 4 3 8 8 O 1.21590 * 120.00344 * 357.06743 * 7 6 4 9 9 C 1.46711 * 119.99608 * 177.07183 * 7 6 4 10 10 C 1.36221 * 125.44645 * 185.07606 * 9 7 6 11 11 C 1.41661 * 107.74233 * 180.27445 * 10 9 7 12 12 C 1.40038 * 133.33793 * 179.76339 * 11 10 9 13 13 C 1.36570 * 119.83135 * 180.02562 * 12 11 10 14 14 C 1.38864 * 120.60102 * 359.95405 * 13 12 11 15 15 C 1.37841 * 120.63486 * 0.02562 * 14 13 12 16 16 C 1.39092 * 119.81819 * 0.02562 * 15 14 13 17 17 N 1.37820 * 133.15125 * 179.97438 * 16 15 14 18 18 C 1.36875 * 125.61997 * 359.97438 * 17 16 15 19 19 H 1.08002 * 119.99886 * 221.68955 * 18 17 16 20 20 C 1.39026 * 120.00154 * 41.68830 * 18 17 16 21 21 N 1.31345 * 119.99848 * 202.09915 * 20 18 17 22 22 Si 1.86799 * 119.99951 * 22.09467 * 20 18 17 23 23 H 1.48497 * 109.47171 * 265.53669 * 22 20 18 24 24 H 1.48500 * 109.46992 * 25.53525 * 22 20 18 25 25 H 1.48496 * 109.46936 * 145.53548 * 22 20 18 26 26 C 1.52999 * 109.47366 * 174.65466 * 4 3 2 27 27 C 1.53004 * 109.47233 * 174.71747 * 26 4 3 28 28 C 1.53003 * 109.46949 * 294.71153 * 26 4 3 29 29 H 4.44641 * 5.63397 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.47199 * 123.69464 * 3 2 1 31 31 H 1.08999 * 109.47521 * 3.69789 * 3 2 1 32 32 H 1.07998 * 126.12810 * 359.97438 * 10 9 7 33 33 H 1.08005 * 120.08808 * 359.96022 * 12 11 10 34 34 H 1.08002 * 119.69918 * 179.97438 * 13 12 11 35 35 H 1.07996 * 119.68029 * 180.02562 * 14 13 12 36 36 H 1.08000 * 120.08616 * 179.97438 * 15 14 13 37 37 H 0.96996 * 119.99855 * 174.98073 * 21 20 18 38 38 H 1.09001 * 109.47496 * 54.71438 * 26 4 3 39 39 H 1.09001 * 109.47028 * 178.23659 * 27 26 4 40 40 H 1.09001 * 109.46756 * 298.22958 * 27 26 4 41 41 H 1.08994 * 109.47232 * 58.23157 * 27 26 4 42 42 H 1.08998 * 109.46865 * 60.00117 * 28 26 4 43 43 H 1.09000 * 109.47312 * 179.97438 * 28 26 4 44 44 H 1.09001 * 109.47254 * 300.00433 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1556 0.6401 1.2931 5 1 2.7165 0.1281 2.1493 6 8 2.7781 2.0419 1.3214 7 6 2.3950 2.5488 2.5110 8 8 2.3259 1.8259 3.4862 9 6 2.0614 3.9727 2.6284 10 6 1.7580 4.6200 3.7879 11 6 1.4930 5.9747 3.4694 12 6 1.1319 7.0894 4.2363 13 6 0.9399 8.2979 3.6298 14 6 1.1003 8.4334 2.2572 15 6 1.4557 7.3510 1.4813 16 6 1.6558 6.1096 2.0760 17 7 2.0069 4.8725 1.5803 18 6 2.2558 4.5817 0.2662 19 1 1.8809 3.6649 -0.1644 20 6 2.9912 5.4664 -0.5144 21 7 2.8771 5.4389 -1.8226 22 14 4.1414 6.6942 0.2973 23 1 3.4336 7.9859 0.4857 24 1 4.5736 6.1695 1.6176 25 1 5.3315 6.9031 -0.5659 26 6 4.6798 0.5212 1.3545 27 6 5.2011 1.2745 2.5800 28 6 5.0725 -0.9539 1.4576 29 1 -1.0501 0.0001 -0.0002 30 1 3.0090 0.5709 -0.8550 31 1 3.0097 -1.0247 -0.0663 32 1 1.7208 4.1785 4.7728 33 1 1.0046 6.9935 5.3045 34 1 0.6610 9.1561 4.2233 35 1 0.9450 9.3961 1.7931 36 1 1.5776 7.4663 0.4144 37 1 3.3333 6.1026 -2.3632 38 1 5.1145 0.9508 0.4519 39 1 6.2838 1.1637 2.6412 40 1 4.9486 2.3312 2.4914 41 1 4.7425 0.8655 3.4802 42 1 4.7011 -1.4906 0.5846 43 1 6.1584 -1.0387 1.5009 44 1 4.6378 -1.3835 2.3602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747195288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:00 Heat of formation + Delta-G solvation = 8.499760 kcal Electronic energy + Delta-G solvation = -28115.962571 eV Core-core repulsion = 24385.808244 eV Total energy + Delta-G solvation = -3730.154326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54096 -41.32951 -38.47882 -37.78542 -36.18515 -35.43311 -34.71689 -33.15151 -31.07759 -30.75551 -30.04539 -28.00936 -26.77780 -26.05317 -24.52348 -22.83843 -22.33322 -21.18314 -21.00579 -20.12091 -19.16834 -19.02220 -17.75413 -17.42053 -17.25875 -16.75171 -16.26482 -15.76730 -15.74017 -15.38553 -15.12263 -14.99018 -14.84362 -14.73537 -14.53104 -14.24603 -13.93794 -13.71891 -13.55438 -13.21301 -13.07723 -12.98247 -12.86230 -12.67579 -12.51054 -12.31067 -12.08816 -12.03658 -11.97134 -11.74722 -11.52667 -11.47573 -11.32406 -11.11717 -10.91625 -10.44925 -9.10839 -8.84680 -8.70845 -6.47489 -0.20587 0.85494 1.00593 1.15163 1.22696 1.31202 1.64425 1.78820 1.86250 1.99072 2.13764 2.37061 2.74676 3.12226 3.31636 3.71135 3.72800 3.85992 3.93595 3.99649 4.18938 4.27513 4.33767 4.37892 4.49463 4.53619 4.59518 4.64814 4.71267 4.73102 4.76883 4.84740 4.95671 4.99940 5.05039 5.07358 5.11153 5.22429 5.24359 5.32528 5.37246 5.48070 5.66925 5.76797 5.81411 5.93969 6.08418 6.37232 6.62733 6.68445 6.87720 7.15553 8.23472 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013034 B = 0.004970 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.659202 B = 5632.270017 C = 6123.828701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.217 4.217 3 C -0.009 4.009 4 C 0.084 3.916 5 H 0.081 0.919 6 O -0.334 6.334 7 C 0.546 3.454 8 O -0.531 6.531 9 C -0.045 4.045 10 C -0.149 4.149 11 C -0.144 4.144 12 C -0.072 4.072 13 C -0.149 4.149 14 C -0.110 4.110 15 C -0.138 4.138 16 C 0.037 3.963 17 N -0.278 5.278 18 C -0.349 4.349 19 H 0.095 0.905 20 C 0.061 3.939 21 N -0.854 5.854 22 Si 0.910 3.090 23 H -0.221 1.221 24 H -0.283 1.283 25 H -0.271 1.271 26 C -0.105 4.105 27 C -0.146 4.146 28 C -0.139 4.139 29 H 0.241 0.759 30 H 0.093 0.907 31 H 0.145 0.855 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.159 0.841 35 H 0.148 0.852 36 H 0.104 0.896 37 H 0.294 0.706 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.018 0.982 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.864 -3.988 5.558 7.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.217 4.217 3 C -0.045 4.045 4 C 0.030 3.970 5 H 0.099 0.901 6 O -0.250 6.250 7 C 0.394 3.606 8 O -0.422 6.422 9 C -0.156 4.156 10 C -0.176 4.176 11 C -0.148 4.148 12 C -0.090 4.090 13 C -0.167 4.167 14 C -0.130 4.130 15 C -0.158 4.158 16 C -0.077 4.077 17 N 0.057 4.943 18 C -0.477 4.477 19 H 0.113 0.887 20 C -0.151 4.151 21 N -0.485 5.485 22 Si 0.733 3.267 23 H -0.144 1.144 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.124 4.124 27 C -0.204 4.204 28 C -0.196 4.196 29 H 0.258 0.742 30 H 0.111 0.889 31 H 0.162 0.838 32 H 0.178 0.822 33 H 0.166 0.834 34 H 0.176 0.824 35 H 0.166 0.834 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.051 -4.377 5.169 7.077 hybrid contribution 0.271 0.175 -0.317 0.452 sum 2.323 -4.202 4.852 6.826 Atomic orbital electron populations 1.25658 0.97032 1.00678 0.99595 1.23574 0.95612 1.00910 1.01585 1.19096 0.84640 1.03557 0.97181 1.23101 0.96291 0.78484 0.99170 0.90105 1.86955 1.75996 1.29245 1.32823 1.19871 0.72701 0.86756 0.81320 1.90728 1.53111 1.59742 1.38670 1.19703 1.17484 0.89082 0.89366 1.20753 1.08036 0.92348 0.96429 1.18332 1.09323 0.94824 0.92360 1.20642 0.97801 0.90646 0.99957 1.20911 1.03544 0.98016 0.94278 1.21140 0.99687 0.97540 0.94592 1.20341 1.04885 0.90972 0.99628 1.18888 1.06298 0.88144 0.94334 1.40372 1.43170 1.05519 1.05196 1.19118 1.36233 1.10013 0.82307 0.88701 1.25834 0.96010 0.98027 0.95200 1.69686 1.38867 1.34369 1.05544 0.86415 0.79810 0.81971 0.78553 1.14406 1.20847 1.19708 1.21505 0.91916 0.99331 0.99612 1.21821 1.02208 0.98496 0.97852 1.21853 1.02854 0.91780 1.03066 0.74209 0.88877 0.83788 0.82248 0.83390 0.82353 0.83400 0.87784 0.89525 0.90127 0.90021 0.96227 0.92656 0.90280 0.90319 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.83 19.25 74.32 1.43 -5.40 16 2 C -0.22 -7.42 13.11 31.13 0.41 -7.01 16 3 C -0.01 -0.26 5.30 28.79 0.15 -0.11 16 4 C 0.08 2.86 1.77 30.59 0.05 2.91 16 5 H 0.08 2.85 6.86 -2.39 -0.02 2.83 16 6 O -0.33 -14.95 7.08 -57.83 -0.41 -15.35 16 7 C 0.55 25.57 6.39 70.04 0.45 26.02 16 8 O -0.53 -24.28 15.19 19.54 0.30 -23.99 16 9 C -0.04 -2.20 6.76 39.88 0.27 -1.93 16 10 C -0.15 -6.53 10.55 22.64 0.24 -6.29 16 11 C -0.14 -6.14 6.16 -21.34 -0.13 -6.27 16 12 C -0.07 -2.38 10.06 22.32 0.22 -2.16 16 13 C -0.15 -4.39 9.97 22.03 0.22 -4.17 16 14 C -0.11 -3.69 10.02 22.33 0.22 -3.47 16 15 C -0.14 -5.97 6.79 22.38 0.15 -5.82 16 16 C 0.04 1.78 5.20 39.07 0.20 1.98 16 17 N -0.28 -14.51 2.42 -331.41 -0.80 -15.31 16 18 C -0.35 -19.43 9.04 84.10 0.76 -18.67 16 19 H 0.10 5.77 7.19 -2.91 -0.02 5.75 16 20 C 0.06 3.24 4.82 84.95 0.41 3.65 16 21 N -0.85 -46.16 13.95 21.67 0.30 -45.86 16 22 Si 0.91 42.42 24.53 68.60 1.68 44.10 16 23 H -0.22 -9.37 5.55 99.48 0.55 -8.82 16 24 H -0.28 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 26 C -0.10 -2.95 2.70 -10.79 -0.03 -2.98 16 27 C -0.15 -4.58 8.13 71.98 0.59 -3.99 16 28 C -0.14 -2.63 8.96 71.98 0.64 -1.99 16 29 H 0.24 5.81 7.80 -4.41 -0.03 5.78 16 30 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.14 2.95 6.34 -2.39 -0.02 2.93 16 32 H 0.16 6.12 8.06 -2.91 -0.02 6.09 16 33 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 34 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 36 H 0.10 4.72 5.88 -2.91 -0.02 4.71 16 37 H 0.29 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.02 0.73 6.84 -2.39 -0.02 0.72 16 41 H 0.05 1.76 7.75 -2.39 -0.02 1.74 16 42 H 0.08 1.20 6.46 -2.39 -0.02 1.18 16 43 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -68.24 364.29 8.19 -60.06 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.85 Total: 32.06 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 6.26 Total: -35.71 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.50 Total: -61.17 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.11 Total: -39.34 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.68 Total: 44.10 kcal Total: -68.24 8.19 -60.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747195288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.559 kcal (2) G-P(sol) polarization free energy of solvation -68.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds