Wall clock time and date at job start Tue Mar 31 2020 15:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47543 * 93.35257 * 3 2 1 5 5 H 1.09002 * 109.46618 * 302.86342 * 4 3 2 6 6 O 1.45198 * 109.46816 * 62.86011 * 4 3 2 7 7 C 1.34874 * 116.99925 * 221.19469 * 6 4 3 8 8 O 1.21589 * 119.99718 * 3.14894 * 7 6 4 9 9 C 1.46712 * 119.99945 * 183.14473 * 7 6 4 10 10 C 1.36216 * 125.44579 * 185.32653 * 9 7 6 11 11 C 1.41665 * 107.74177 * 180.27720 * 10 9 7 12 12 C 1.40043 * 133.34103 * 179.75727 * 11 10 9 13 13 C 1.36560 * 119.83030 * 180.02562 * 12 11 10 14 14 C 1.38864 * 120.60251 * 359.95118 * 13 12 11 15 15 C 1.37839 * 120.64053 * 0.03067 * 14 13 12 16 16 C 1.39097 * 119.80988 * 359.97438 * 15 14 13 17 17 N 1.37821 * 133.14363 * 180.02562 * 16 15 14 18 18 C 1.36875 * 125.62633 * 0.02562 * 17 16 15 19 19 H 1.07992 * 120.00005 * 222.75409 * 18 17 16 20 20 C 1.39021 * 119.99806 * 42.74896 * 18 17 16 21 21 N 1.31338 * 120.00019 * 199.34270 * 20 18 17 22 22 Si 1.86806 * 120.00098 * 19.34328 * 20 18 17 23 23 H 1.48501 * 109.47060 * 264.73914 * 22 20 18 24 24 H 1.48496 * 109.47014 * 24.73909 * 22 20 18 25 25 H 1.48504 * 109.46966 * 144.73827 * 22 20 18 26 26 C 1.53000 * 109.47363 * 182.86289 * 4 3 2 27 27 C 1.52999 * 109.47253 * 65.36492 * 26 4 3 28 28 C 1.52997 * 109.47008 * 185.36667 * 26 4 3 29 29 H 4.44648 * 5.63470 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47539 * 333.34820 * 3 2 1 31 31 H 1.09003 * 109.47170 * 213.35167 * 3 2 1 32 32 H 1.07996 * 126.13503 * 0.02562 * 10 9 7 33 33 H 1.08004 * 120.07899 * 359.96840 * 12 11 10 34 34 H 1.08001 * 119.69822 * 179.97438 * 13 12 11 35 35 H 1.08004 * 119.67891 * 180.02562 * 14 13 12 36 36 H 1.07992 * 120.09232 * 179.97438 * 15 14 13 37 37 H 0.97004 * 120.00272 * 174.98656 * 21 20 18 38 38 H 1.09006 * 109.46840 * 305.36214 * 26 4 3 39 39 H 1.08993 * 109.47277 * 59.99459 * 27 26 4 40 40 H 1.08996 * 109.47336 * 180.02562 * 27 26 4 41 41 H 1.09009 * 109.46536 * 299.99971 * 27 26 4 42 42 H 1.08991 * 109.47519 * 59.99773 * 28 26 4 43 43 H 1.09002 * 109.47310 * 180.02562 * 28 26 4 44 44 H 1.09006 * 109.46950 * 299.99479 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 0.0852 -1.4400 5 1 2.7518 -0.7458 -2.0180 6 8 2.7281 1.3401 -2.0320 7 6 2.2977 1.2990 -3.3096 8 8 2.2266 0.2347 -3.8932 9 6 1.9152 2.5385 -3.9950 10 6 1.3716 2.6165 -5.2415 11 6 1.1568 3.9859 -5.5340 12 6 0.6377 4.6615 -6.6454 13 6 0.5539 6.0244 -6.6337 14 6 0.9782 6.7493 -5.5279 15 6 1.4924 6.1070 -4.4220 16 6 1.5879 4.7194 -4.4104 17 7 2.0449 3.8139 -3.4774 18 6 2.5500 4.1261 -2.2441 19 1 3.4308 3.6201 -1.8775 20 6 1.9292 5.0946 -1.4636 21 7 2.5872 5.6682 -0.4823 22 14 0.1589 5.5800 -1.8103 23 1 0.1369 6.7826 -2.6812 24 1 -0.5363 4.4604 -2.4947 25 1 -0.5311 5.8827 -0.5306 26 6 4.6844 0.0140 -1.4447 27 6 5.1325 -1.3609 -0.9451 28 6 5.2006 0.2325 -2.8683 29 1 -1.0500 0.0002 -0.0001 30 1 3.0098 -0.9176 0.4610 31 1 3.0089 0.8593 0.5650 32 1 1.1483 1.7839 -5.8922 33 1 0.3053 4.1059 -7.5099 34 1 0.1535 6.5433 -7.4921 35 1 0.9048 7.8268 -5.5345 36 1 1.8202 6.6795 -3.5670 37 1 2.1800 6.3944 0.0155 38 1 5.0861 0.7873 -0.7899 39 1 4.7306 -2.1341 -1.5999 40 1 6.2212 -1.4115 -0.9481 41 1 4.7646 -1.5165 0.0691 42 1 4.8815 1.2120 -3.2243 43 1 6.2894 0.1814 -2.8718 44 1 4.7989 -0.5407 -3.5232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747195290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:04 Heat of formation + Delta-G solvation = 21.727717 kcal Electronic energy + Delta-G solvation = -28125.816108 eV Core-core repulsion = 24396.235389 eV Total energy + Delta-G solvation = -3729.580719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.85945 -39.75234 -37.03942 -36.19332 -34.73947 -33.58645 -33.50289 -31.41306 -29.67423 -29.26881 -28.44819 -26.97590 -24.95879 -24.57463 -23.12284 -21.18671 -20.76922 -19.94085 -19.29596 -18.35505 -17.95136 -17.38493 -16.07053 -15.86921 -15.60697 -15.25034 -14.59851 -14.49811 -14.18979 -13.96874 -13.67127 -13.49740 -13.24942 -13.14015 -13.06543 -12.79394 -12.53725 -12.26294 -12.07761 -12.02778 -11.61254 -11.47653 -11.40303 -11.03709 -10.97925 -10.92437 -10.73504 -10.55037 -10.31164 -10.18836 -10.09922 -9.89191 -9.85247 -9.62142 -9.49181 -8.71460 -7.44369 -7.04735 -6.90585 -4.54471 1.43554 2.43809 2.66076 2.99075 3.01110 3.08690 3.10567 3.21024 3.26456 3.85933 3.89984 4.10028 4.48558 4.56440 4.76312 4.90096 4.95752 5.07942 5.25256 5.39542 5.51486 5.55645 5.66474 5.67870 5.70607 5.80793 5.85581 5.94429 5.98016 6.02712 6.09397 6.13034 6.18639 6.25585 6.32592 6.40396 6.47567 6.56436 6.70582 6.78615 6.97845 7.15933 7.21866 7.30893 7.55042 7.57434 7.82767 7.88517 8.12795 8.43456 8.67913 8.97950 10.10627 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.005131 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.586332 B = 5455.711344 C = 6271.086669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C -0.012 4.012 4 C 0.090 3.910 5 H 0.090 0.910 6 O -0.316 6.316 7 C 0.546 3.454 8 O -0.523 6.523 9 C -0.014 4.014 10 C -0.156 4.156 11 C -0.126 4.126 12 C -0.076 4.076 13 C -0.157 4.157 14 C -0.132 4.132 15 C -0.098 4.098 16 C 0.054 3.946 17 N -0.254 5.254 18 C -0.335 4.335 19 H 0.130 0.870 20 C 0.085 3.915 21 N -0.821 5.821 22 Si 0.867 3.133 23 H -0.244 1.244 24 H -0.255 1.255 25 H -0.281 1.281 26 C -0.107 4.107 27 C -0.146 4.146 28 C -0.149 4.149 29 H 0.214 0.786 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.287 0.713 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.660 -6.359 -0.850 6.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.180 4.180 3 C -0.049 4.049 4 C 0.034 3.966 5 H 0.108 0.892 6 O -0.231 6.231 7 C 0.393 3.607 8 O -0.414 6.414 9 C -0.127 4.127 10 C -0.183 4.183 11 C -0.130 4.130 12 C -0.095 4.095 13 C -0.176 4.176 14 C -0.153 4.153 15 C -0.117 4.117 16 C -0.060 4.060 17 N 0.083 4.917 18 C -0.463 4.463 19 H 0.148 0.852 20 C -0.130 4.130 21 N -0.450 5.450 22 Si 0.691 3.309 23 H -0.169 1.169 24 H -0.178 1.178 25 H -0.207 1.207 26 C -0.125 4.125 27 C -0.203 4.203 28 C -0.206 4.206 29 H 0.231 0.769 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.157 0.843 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.833 -6.567 -0.346 6.629 hybrid contribution -1.016 0.287 0.154 1.068 sum -0.183 -6.280 -0.191 6.285 Atomic orbital electron populations 1.24797 0.95911 1.01567 1.00385 1.22859 0.94360 1.00029 1.00703 1.18971 0.85488 1.04106 0.96292 1.22724 0.94029 0.86951 0.92891 0.89208 1.86981 1.74318 1.34676 1.27158 1.19945 0.73041 0.87744 0.79930 1.90767 1.53273 1.30685 1.66662 1.19199 1.13533 0.83170 0.96772 1.20389 1.07079 0.95268 0.95521 1.17909 1.07177 0.92786 0.95161 1.20156 0.99308 0.93804 0.96241 1.20359 1.04918 0.93854 0.98483 1.20582 1.02375 0.98694 0.93637 1.20219 1.01373 0.91167 0.98946 1.18370 1.06437 0.91389 0.89836 1.40398 1.38240 1.02075 1.10970 1.19497 1.12327 1.23778 0.90695 0.85250 1.25448 0.99037 0.94492 0.93982 1.69622 1.37696 1.19153 1.18541 0.87017 0.83480 0.81849 0.78586 1.16895 1.17829 1.20712 1.21452 0.93613 0.98723 0.98745 1.21873 1.01470 0.95952 1.01024 1.21825 1.00656 1.02546 0.95590 0.76889 0.87890 0.88112 0.84346 0.87077 0.87204 0.86909 0.86279 0.90206 0.89739 0.92400 0.92056 0.92262 0.92345 0.92439 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.37 19.25 29.55 0.57 -2.80 16 2 C -0.18 -3.03 13.05 -37.13 -0.48 -3.52 16 3 C -0.01 -0.18 5.27 -29.52 -0.16 -0.33 16 4 C 0.09 1.47 1.80 -26.73 -0.05 1.42 16 5 H 0.09 1.53 6.79 -51.93 -0.35 1.18 16 6 O -0.32 -6.60 6.97 -40.97 -0.29 -6.89 16 7 C 0.55 12.15 6.48 34.15 0.22 12.37 16 8 O -0.52 -11.58 15.69 -19.33 -0.30 -11.89 16 9 C -0.01 -0.33 6.76 -82.27 -0.56 -0.88 16 10 C -0.16 -3.42 10.55 -39.00 -0.41 -3.83 16 11 C -0.13 -2.76 6.16 -106.89 -0.66 -3.41 16 12 C -0.08 -1.42 10.06 -39.51 -0.40 -1.81 16 13 C -0.16 -2.73 9.97 -39.96 -0.40 -3.13 16 14 C -0.13 -2.48 10.02 -39.50 -0.40 -2.87 16 15 C -0.10 -2.14 6.77 -39.41 -0.27 -2.41 16 16 C 0.05 1.29 5.17 -83.83 -0.43 0.85 16 17 N -0.25 -6.32 2.41 -56.10 -0.14 -6.46 16 18 C -0.34 -8.71 9.03 -15.01 -0.14 -8.85 16 19 H 0.13 3.52 7.25 -52.49 -0.38 3.14 16 20 C 0.08 2.17 4.91 -17.47 -0.09 2.09 16 21 N -0.82 -21.26 13.95 55.50 0.77 -20.49 16 22 Si 0.87 20.35 24.30 -169.99 -4.13 16.22 16 23 H -0.24 -5.38 5.59 56.52 0.32 -5.07 16 24 H -0.25 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 C -0.11 -1.47 2.70 -90.62 -0.24 -1.72 16 27 C -0.15 -1.52 8.96 37.16 0.33 -1.18 16 28 C -0.15 -2.23 8.34 37.16 0.31 -1.92 16 29 H 0.21 2.68 7.80 -54.09 -0.42 2.26 16 30 H 0.10 1.13 6.45 -51.93 -0.33 0.79 16 31 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.14 2.72 8.06 -52.49 -0.42 2.30 16 33 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.12 2.67 5.84 -52.49 -0.31 2.36 16 37 H 0.29 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.53 6.52 -51.92 -0.34 0.19 16 42 H 0.06 1.04 6.83 -51.93 -0.35 0.69 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.91 8.11 -51.93 -0.42 0.48 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -29.23 365.22 -7.75 -36.99 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.94 Total: 8.96 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -3.24 Total: -21.96 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.64 Total: -26.95 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.59 Total: -18.77 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.13 Total: 16.22 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.23 -7.75 -36.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747195290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.714 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds