Wall clock time and date at job start Tue Mar 31 2020 15:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47543 * 93.35257 * 3 2 1 5 5 H 1.09002 * 109.46618 * 302.86342 * 4 3 2 6 6 O 1.45198 * 109.46816 * 62.86011 * 4 3 2 7 7 C 1.34874 * 116.99925 * 221.19469 * 6 4 3 8 8 O 1.21589 * 119.99718 * 3.14894 * 7 6 4 9 9 C 1.46712 * 119.99945 * 183.14473 * 7 6 4 10 10 C 1.36216 * 125.44579 * 185.32653 * 9 7 6 11 11 C 1.41665 * 107.74177 * 180.27720 * 10 9 7 12 12 C 1.40043 * 133.34103 * 179.75727 * 11 10 9 13 13 C 1.36560 * 119.83030 * 180.02562 * 12 11 10 14 14 C 1.38864 * 120.60251 * 359.95118 * 13 12 11 15 15 C 1.37839 * 120.64053 * 0.03067 * 14 13 12 16 16 C 1.39097 * 119.80988 * 359.97438 * 15 14 13 17 17 N 1.37821 * 133.14363 * 180.02562 * 16 15 14 18 18 C 1.36875 * 125.62633 * 0.02562 * 17 16 15 19 19 H 1.07992 * 120.00005 * 222.75409 * 18 17 16 20 20 C 1.39021 * 119.99806 * 42.74896 * 18 17 16 21 21 N 1.31338 * 120.00019 * 199.34270 * 20 18 17 22 22 Si 1.86806 * 120.00098 * 19.34328 * 20 18 17 23 23 H 1.48501 * 109.47060 * 264.73914 * 22 20 18 24 24 H 1.48496 * 109.47014 * 24.73909 * 22 20 18 25 25 H 1.48504 * 109.46966 * 144.73827 * 22 20 18 26 26 C 1.53000 * 109.47363 * 182.86289 * 4 3 2 27 27 C 1.52999 * 109.47253 * 65.36492 * 26 4 3 28 28 C 1.52997 * 109.47008 * 185.36667 * 26 4 3 29 29 H 4.44648 * 5.63470 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47539 * 333.34820 * 3 2 1 31 31 H 1.09003 * 109.47170 * 213.35167 * 3 2 1 32 32 H 1.07996 * 126.13503 * 0.02562 * 10 9 7 33 33 H 1.08004 * 120.07899 * 359.96840 * 12 11 10 34 34 H 1.08001 * 119.69822 * 179.97438 * 13 12 11 35 35 H 1.08004 * 119.67891 * 180.02562 * 14 13 12 36 36 H 1.07992 * 120.09232 * 179.97438 * 15 14 13 37 37 H 0.97004 * 120.00272 * 174.98656 * 21 20 18 38 38 H 1.09006 * 109.46840 * 305.36214 * 26 4 3 39 39 H 1.08993 * 109.47277 * 59.99459 * 27 26 4 40 40 H 1.08996 * 109.47336 * 180.02562 * 27 26 4 41 41 H 1.09009 * 109.46536 * 299.99971 * 27 26 4 42 42 H 1.08991 * 109.47519 * 59.99773 * 28 26 4 43 43 H 1.09002 * 109.47310 * 180.02562 * 28 26 4 44 44 H 1.09006 * 109.46950 * 299.99479 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 0.0852 -1.4400 5 1 2.7518 -0.7458 -2.0180 6 8 2.7281 1.3401 -2.0320 7 6 2.2977 1.2990 -3.3096 8 8 2.2266 0.2347 -3.8932 9 6 1.9152 2.5385 -3.9950 10 6 1.3716 2.6165 -5.2415 11 6 1.1568 3.9859 -5.5340 12 6 0.6377 4.6615 -6.6454 13 6 0.5539 6.0244 -6.6337 14 6 0.9782 6.7493 -5.5279 15 6 1.4924 6.1070 -4.4220 16 6 1.5879 4.7194 -4.4104 17 7 2.0449 3.8139 -3.4774 18 6 2.5500 4.1261 -2.2441 19 1 3.4308 3.6201 -1.8775 20 6 1.9292 5.0946 -1.4636 21 7 2.5872 5.6682 -0.4823 22 14 0.1589 5.5800 -1.8103 23 1 0.1369 6.7826 -2.6812 24 1 -0.5363 4.4604 -2.4947 25 1 -0.5311 5.8827 -0.5306 26 6 4.6844 0.0140 -1.4447 27 6 5.1325 -1.3609 -0.9451 28 6 5.2006 0.2325 -2.8683 29 1 -1.0500 0.0002 -0.0001 30 1 3.0098 -0.9176 0.4610 31 1 3.0089 0.8593 0.5650 32 1 1.1483 1.7839 -5.8922 33 1 0.3053 4.1059 -7.5099 34 1 0.1535 6.5433 -7.4921 35 1 0.9048 7.8268 -5.5345 36 1 1.8202 6.6795 -3.5670 37 1 2.1800 6.3944 0.0155 38 1 5.0861 0.7873 -0.7899 39 1 4.7306 -2.1341 -1.5999 40 1 6.2212 -1.4115 -0.9481 41 1 4.7646 -1.5165 0.0691 42 1 4.8815 1.2120 -3.2243 43 1 6.2894 0.1814 -2.8718 44 1 4.7989 -0.5407 -3.5232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747195290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:03 Heat of formation + Delta-G solvation = 8.380581 kcal Electronic energy + Delta-G solvation = -28126.394883 eV Core-core repulsion = 24396.235389 eV Total energy + Delta-G solvation = -3730.159494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.54966 -41.32677 -38.49114 -37.79457 -36.17570 -35.42082 -34.72505 -33.15965 -31.08879 -30.75396 -30.05258 -28.00499 -26.77322 -26.06275 -24.52335 -22.84001 -22.34008 -21.19372 -21.00143 -20.12132 -19.18440 -19.01938 -17.78484 -17.40518 -17.25356 -16.76559 -16.26523 -15.79316 -15.67460 -15.48708 -15.11414 -14.91162 -14.84225 -14.78236 -14.60382 -14.20120 -13.95058 -13.71856 -13.55869 -13.21246 -13.06866 -12.98226 -12.82992 -12.68051 -12.51561 -12.32306 -12.07963 -12.01441 -12.00513 -11.76261 -11.53323 -11.48849 -11.32241 -11.12721 -10.91847 -10.45443 -9.11057 -8.83863 -8.70208 -6.49024 -0.21344 0.85023 0.99457 1.13581 1.21699 1.30181 1.64295 1.77256 1.84885 1.98304 2.13680 2.38011 2.73586 3.11437 3.31149 3.71214 3.72451 3.86463 3.93920 3.98828 4.19081 4.26808 4.33345 4.38100 4.49639 4.53204 4.59235 4.64446 4.71229 4.73372 4.76636 4.84983 4.95441 4.99333 5.04165 5.06507 5.11738 5.22344 5.23535 5.32877 5.37795 5.48125 5.66225 5.76338 5.80996 5.92930 6.08211 6.37088 6.61417 6.68408 6.87107 7.15492 8.24733 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.005131 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.586332 B = 5455.711344 C = 6271.086669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.214 4.214 3 C -0.010 4.010 4 C 0.083 3.917 5 H 0.082 0.918 6 O -0.333 6.333 7 C 0.546 3.454 8 O -0.531 6.531 9 C -0.043 4.043 10 C -0.148 4.148 11 C -0.144 4.144 12 C -0.071 4.071 13 C -0.149 4.149 14 C -0.108 4.108 15 C -0.141 4.141 16 C 0.039 3.961 17 N -0.280 5.280 18 C -0.347 4.347 19 H 0.099 0.901 20 C 0.059 3.941 21 N -0.858 5.858 22 Si 0.910 3.090 23 H -0.219 1.219 24 H -0.284 1.284 25 H -0.276 1.276 26 C -0.103 4.103 27 C -0.139 4.139 28 C -0.145 4.145 29 H 0.240 0.760 30 H 0.145 0.855 31 H 0.094 0.906 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.293 0.707 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.019 0.981 43 H 0.080 0.920 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 -6.141 -2.826 6.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.214 4.214 3 C -0.046 4.046 4 C 0.028 3.972 5 H 0.100 0.900 6 O -0.249 6.249 7 C 0.394 3.606 8 O -0.423 6.423 9 C -0.154 4.154 10 C -0.175 4.175 11 C -0.149 4.149 12 C -0.090 4.090 13 C -0.168 4.168 14 C -0.128 4.128 15 C -0.161 4.161 16 C -0.075 4.075 17 N 0.055 4.945 18 C -0.474 4.474 19 H 0.117 0.883 20 C -0.152 4.152 21 N -0.488 5.488 22 Si 0.733 3.267 23 H -0.143 1.143 24 H -0.210 1.210 25 H -0.202 1.202 26 C -0.122 4.122 27 C -0.196 4.196 28 C -0.202 4.202 29 H 0.257 0.743 30 H 0.162 0.838 31 H 0.112 0.888 32 H 0.178 0.822 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.167 0.833 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.038 0.962 43 H 0.099 0.901 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.260 -6.335 -2.310 6.749 hybrid contribution -0.711 0.191 0.511 0.896 sum -0.971 -6.145 -1.800 6.476 Atomic orbital electron populations 1.25644 0.97042 1.01039 0.99605 1.23590 0.95632 1.00687 1.01473 1.19126 0.84555 1.05814 0.95081 1.23117 0.95813 0.84810 0.93443 0.89986 1.86960 1.74058 1.37347 1.26533 1.19880 0.72930 0.87414 0.80406 1.90727 1.53902 1.30695 1.66972 1.19698 1.14403 0.83663 0.97679 1.20768 1.05495 0.96331 0.94893 1.18340 1.07907 0.92582 0.96051 1.20650 0.97602 0.94765 0.95965 1.20915 1.03158 0.93456 0.99249 1.21152 0.98655 1.00682 0.92308 1.20355 1.04693 0.90568 1.00512 1.18904 1.05911 0.92387 0.90255 1.40375 1.40420 1.02680 1.11033 1.19147 1.12023 1.24334 0.91922 0.88344 1.25822 1.00970 0.94575 0.93815 1.69652 1.38817 1.20483 1.19896 0.86416 0.80309 0.81379 0.78596 1.14251 1.20990 1.20153 1.21481 0.91617 1.01089 0.97973 1.21851 1.02621 0.93170 1.01934 1.21791 1.02139 1.00009 0.96269 0.74322 0.83790 0.88771 0.82227 0.83362 0.82312 0.83344 0.87684 0.89650 0.90158 0.92144 0.90324 0.90287 0.96198 0.90073 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.04 19.25 74.32 1.43 -5.61 16 2 C -0.21 -7.37 13.05 31.12 0.41 -6.96 16 3 C -0.01 -0.29 5.27 28.79 0.15 -0.14 16 4 C 0.08 2.80 1.80 30.59 0.06 2.86 16 5 H 0.08 2.88 6.79 -2.39 -0.02 2.87 16 6 O -0.33 -14.87 6.97 -57.88 -0.40 -15.27 16 7 C 0.55 25.56 6.48 70.04 0.45 26.02 16 8 O -0.53 -24.33 15.69 19.54 0.31 -24.02 16 9 C -0.04 -2.11 6.76 39.87 0.27 -1.84 16 10 C -0.15 -6.49 10.55 22.64 0.24 -6.25 16 11 C -0.14 -6.15 6.16 -21.34 -0.13 -6.28 16 12 C -0.07 -2.36 10.06 22.32 0.22 -2.13 16 13 C -0.15 -4.38 9.97 22.03 0.22 -4.16 16 14 C -0.11 -3.62 10.02 22.33 0.22 -3.40 16 15 C -0.14 -6.08 6.77 22.38 0.15 -5.93 16 16 C 0.04 1.88 5.17 39.07 0.20 2.08 16 17 N -0.28 -14.60 2.41 -331.42 -0.80 -15.39 16 18 C -0.35 -19.23 9.03 84.09 0.76 -18.47 16 19 H 0.10 5.88 7.25 -2.91 -0.02 5.86 16 20 C 0.06 3.17 4.91 84.95 0.42 3.59 16 21 N -0.86 -46.56 13.95 21.67 0.30 -46.26 16 22 Si 0.91 43.08 24.30 68.60 1.67 44.75 16 23 H -0.22 -9.36 5.59 99.48 0.56 -8.81 16 24 H -0.28 -14.72 7.11 99.48 0.71 -14.01 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 C -0.10 -2.88 2.70 -10.79 -0.03 -2.91 16 27 C -0.14 -2.63 8.96 71.98 0.64 -1.98 16 28 C -0.14 -4.49 8.34 71.98 0.60 -3.89 16 29 H 0.24 5.91 7.80 -4.42 -0.03 5.87 16 30 H 0.14 2.93 6.45 -2.39 -0.02 2.92 16 31 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.16 6.12 8.06 -2.91 -0.02 6.10 16 33 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.11 4.75 5.84 -2.91 -0.02 4.73 16 37 H 0.29 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.19 6.52 -2.38 -0.02 1.18 16 42 H 0.02 0.74 6.83 -2.39 -0.02 0.72 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.05 1.70 8.11 -2.38 -0.02 1.68 16 Total: -1.00 -68.40 365.22 8.21 -60.19 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 0.85 Total: 31.43 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 6.29 Total: -35.41 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.50 Total: -61.65 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.10 Total: -39.30 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.67 Total: 44.75 kcal Total: -68.40 8.21 -60.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747195290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.566 kcal (2) G-P(sol) polarization free energy of solvation -68.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds