Wall clock time and date at job start Tue Mar 31 2020 14:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50711 * 109.46837 * 2 1 4 4 C 1.38258 * 119.99677 * 270.01831 * 3 2 1 5 5 C 1.38214 * 119.99748 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.00216 * 359.95281 * 5 4 3 7 7 C 1.38211 * 119.99781 * 0.07362 * 6 5 4 8 8 S 1.76195 * 119.99984 * 179.97438 * 7 6 5 9 9 O 1.42102 * 106.40482 * 23.49699 * 8 7 6 10 10 O 1.42102 * 106.40264 * 156.41048 * 8 7 6 11 11 N 1.65596 * 107.22143 * 269.95198 * 8 7 6 12 12 C 1.46504 * 119.99694 * 89.99846 * 11 8 7 13 13 C 1.50693 * 109.47096 * 94.34415 * 12 11 8 14 14 H 1.07998 * 120.00605 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00086 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99974 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00032 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46788 * 90.00428 * 17 15 13 19 19 H 1.48497 * 109.47143 * 210.00659 * 17 15 13 20 20 H 1.48502 * 109.47059 * 330.00665 * 17 15 13 21 21 C 1.46492 * 120.00281 * 270.00302 * 11 8 7 22 22 C 1.53000 * 109.47444 * 93.14880 * 21 11 8 23 23 C 1.53004 * 109.46883 * 63.06037 * 22 21 11 24 24 C 1.53002 * 109.47314 * 183.05809 * 22 21 11 25 25 C 1.38206 * 120.00028 * 89.99789 * 3 2 1 26 26 H 1.08998 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47295 * 300.00543 * 1 2 3 28 28 H 1.09000 * 109.46920 * 60.00286 * 1 2 3 29 29 H 1.08997 * 109.47746 * 240.00021 * 2 1 3 30 30 H 1.08997 * 109.47328 * 119.99072 * 2 1 3 31 31 H 1.08001 * 120.00070 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.99796 * 179.97438 * 5 4 3 33 33 H 1.08001 * 120.00038 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46822 * 214.33869 * 12 11 8 35 35 H 1.08996 * 109.47091 * 334.33706 * 12 11 8 36 36 H 0.96997 * 119.99713 * 179.97438 * 16 15 13 37 37 H 1.09005 * 109.47185 * 213.15064 * 21 11 8 38 38 H 1.09006 * 109.47191 * 333.14637 * 21 11 8 39 39 H 1.08996 * 109.47133 * 303.05989 * 22 21 11 40 40 H 1.09006 * 109.46686 * 52.75305 * 23 22 21 41 41 H 1.08998 * 109.47107 * 172.74944 * 23 22 21 42 42 H 1.08992 * 109.47139 * 292.75176 * 23 22 21 43 43 H 1.09004 * 109.47013 * 59.99871 * 24 22 21 44 44 H 1.08998 * 109.46865 * 180.02562 * 24 22 21 45 45 H 1.09005 * 109.47055 * 300.00395 * 24 22 21 46 46 H 1.08004 * 120.00135 * 359.72255 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2623 2.0728 -1.1974 5 6 2.7235 3.3757 -1.1974 6 6 2.9538 4.0275 -0.0001 7 6 2.7244 3.3757 1.1969 8 16 3.0186 4.2061 2.7227 9 8 2.9332 5.5972 2.4455 10 8 2.2113 3.5566 3.6952 11 7 4.5915 3.9095 3.1471 12 6 5.6538 4.8141 2.7003 13 6 5.9215 5.8414 3.7698 14 1 5.3567 5.8227 4.6901 15 6 6.8869 6.8059 3.5731 16 7 7.1202 7.7028 4.5063 17 14 7.8635 6.8389 1.9810 18 1 7.1624 7.6919 0.9879 19 1 9.2165 7.3925 2.2416 20 1 7.9877 5.4584 1.4478 21 6 4.9208 2.7425 3.9690 22 6 5.2844 1.5656 3.0615 23 6 6.5380 1.9116 2.2553 24 6 5.5543 0.3261 3.9170 25 6 2.2626 2.0725 1.1969 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 2.0824 1.5636 -2.1327 32 1 2.9035 3.8848 -2.1327 33 1 3.3145 5.0455 -0.0001 34 1 6.5620 4.2421 2.5104 35 1 5.3422 5.3159 1.7842 36 1 7.7997 8.3811 4.3680 37 1 5.7674 2.9793 4.6136 38 1 4.0603 2.4757 4.5827 39 1 4.4583 1.3637 2.3798 40 1 7.3271 2.2379 2.9329 41 1 6.8716 1.0309 1.7065 42 1 6.3084 2.7123 1.5525 43 1 4.6613 0.0797 4.4914 44 1 5.8138 -0.5121 3.2705 45 1 6.3805 0.5281 4.5988 46 1 2.0783 1.5649 2.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751246167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:12 Heat of formation + Delta-G solvation = -63.465862 kcal Electronic energy + Delta-G solvation = -27148.109877 eV Core-core repulsion = 23550.278839 eV Total energy + Delta-G solvation = -3597.831038 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.45174 -37.33058 -36.67189 -35.24107 -34.33286 -33.71955 -32.12368 -31.23431 -29.54102 -28.25859 -26.88168 -25.02467 -24.16210 -23.19385 -21.87656 -21.35153 -20.10175 -18.28058 -17.44159 -16.89866 -16.70506 -16.05575 -15.85511 -15.47048 -14.68762 -14.49026 -14.31810 -14.05323 -13.87024 -13.69777 -13.47816 -13.38566 -12.82448 -12.38274 -12.37108 -12.32861 -12.16530 -12.02994 -11.90962 -11.62965 -11.47988 -11.45922 -11.35828 -11.34918 -11.26027 -11.02947 -10.86539 -10.59097 -10.45700 -10.29302 -10.25085 -10.10077 -9.53150 -9.29608 -8.84845 -8.57539 -8.07453 -6.07047 -4.05673 0.74518 1.04400 1.25503 3.26377 3.31207 3.32531 3.36314 3.72040 4.31183 4.38665 4.45687 4.62667 4.88482 4.90940 4.97243 5.07589 5.11774 5.16977 5.20886 5.22626 5.28801 5.33708 5.45251 5.56308 5.61961 5.66371 5.81736 5.83714 5.87803 5.90039 5.99072 6.02338 6.10378 6.14312 6.22625 6.22991 6.27464 6.35936 6.40702 6.55585 6.62994 6.77910 6.82538 7.08735 7.37673 7.59334 8.50185 8.98588 9.52037 11.06582 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.004918 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.845085 B = 5691.564496 C = 6133.513394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.108 4.108 4 C -0.071 4.071 5 C -0.139 4.139 6 C -0.023 4.023 7 C -0.668 4.668 8 S 2.683 3.317 9 O -0.940 6.940 10 O -0.972 6.972 11 N -0.972 5.972 12 C 0.220 3.780 13 C -0.529 4.529 14 H 0.079 0.921 15 C 0.075 3.925 16 N -0.895 5.895 17 Si 0.867 3.133 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.264 1.264 21 C 0.124 3.876 22 C -0.120 4.120 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.020 4.020 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.045 0.955 35 H 0.027 0.973 36 H 0.264 0.736 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 -17.114 -10.692 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C -0.109 4.109 4 C -0.089 4.089 5 C -0.158 4.158 6 C -0.042 4.042 7 C -0.752 4.752 8 S 2.771 3.229 9 O -0.930 6.930 10 O -0.962 6.962 11 N -0.810 5.810 12 C 0.097 3.903 13 C -0.568 4.568 14 H 0.097 0.903 15 C -0.128 4.128 16 N -0.533 5.533 17 Si 0.694 3.306 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.188 1.188 21 C -0.002 4.002 22 C -0.140 4.140 23 C -0.203 4.203 24 C -0.202 4.202 25 C -0.039 4.039 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.910 -16.450 -10.203 20.911 hybrid contribution 0.816 -0.157 -1.545 1.754 sum -7.094 -16.607 -11.748 21.543 Atomic orbital electron populations 1.21780 0.94671 1.01773 1.02431 1.20542 0.96267 0.92234 1.03064 1.19984 1.00959 0.96727 0.93196 1.21254 0.95574 0.94539 0.97540 1.21261 1.01072 0.95199 0.98242 1.21009 0.92626 0.99464 0.91131 1.31513 1.14467 1.07587 1.21639 1.02313 0.73067 0.73864 0.73644 1.93610 1.85566 1.28657 1.85178 1.93500 1.67463 1.77465 1.57772 1.57133 1.24610 1.35458 1.63775 1.19652 0.86399 0.88585 0.95635 1.21372 1.20507 1.11433 1.03503 0.90311 1.24838 0.96691 0.95019 0.96266 1.69892 1.33268 1.16610 1.33549 0.86997 0.79973 0.79026 0.84642 1.19806 1.20980 1.18839 1.21389 1.02861 0.83355 0.92618 1.21672 0.98799 0.95610 0.97941 1.21926 0.97379 1.00773 1.00237 1.21770 1.01798 0.96829 0.99763 1.20762 0.92570 0.92032 0.98505 0.92290 0.92243 0.92624 0.90975 0.90689 0.85756 0.85286 0.84192 0.93701 0.95538 0.92555 0.88951 0.90001 0.91753 0.92082 0.93712 0.91983 0.92618 0.92940 0.92288 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.83 16 2 C -0.08 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.11 -1.24 5.13 -104.62 -0.54 -1.78 16 4 C -0.07 -0.77 9.70 -39.58 -0.38 -1.15 16 5 C -0.14 -1.67 10.05 -39.58 -0.40 -2.07 16 6 C -0.02 -0.35 9.52 -39.58 -0.38 -0.72 16 7 C -0.67 -10.71 5.97 -39.58 -0.24 -10.94 16 8 S 2.68 52.99 5.65 -107.50 -0.61 52.38 16 9 O -0.94 -22.05 16.27 -57.17 -0.93 -22.98 16 10 O -0.97 -19.84 15.85 -57.17 -0.91 -20.74 16 11 N -0.97 -19.23 2.63 -115.67 -0.30 -19.53 16 12 C 0.22 5.01 3.35 -5.19 -0.02 4.99 16 13 C -0.53 -14.73 9.94 -34.44 -0.34 -15.08 16 14 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.89 -27.24 13.96 55.43 0.77 -26.46 16 17 Si 0.87 20.70 27.47 -169.99 -4.67 16.03 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 21 C 0.12 2.07 5.21 -4.05 -0.02 2.05 16 22 C -0.12 -1.64 3.14 -90.62 -0.28 -1.92 16 23 C -0.15 -2.08 7.77 37.16 0.29 -1.79 16 24 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 25 C -0.02 -0.27 7.86 -39.58 -0.31 -0.58 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.14 2.11 7.62 -52.49 -0.40 1.71 16 34 H 0.05 0.96 4.52 -51.93 -0.23 0.73 16 35 H 0.03 0.60 7.06 -51.93 -0.37 0.24 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.09 1.60 8.10 -51.93 -0.42 1.17 16 38 H 0.08 1.31 6.95 -51.93 -0.36 0.95 16 39 H 0.06 0.85 6.76 -51.93 -0.35 0.50 16 40 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.97 6.26 -51.93 -0.33 0.64 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.14 1.75 7.62 -52.48 -0.40 1.35 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -33.48 379.32 -10.61 -44.09 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.51 Total: 1.43 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: -2.18 Total: -29.94 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.47 Total: -46.00 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -1.84 Total: -43.73 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Atomic # 16 Polarization: 52.99 SS G_CDS: -0.61 Total: 52.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.48 -10.61 -44.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751246167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.373 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds