Wall clock time and date at job start Tue Mar 31 2020 14:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50711 * 109.46837 * 2 1 4 4 C 1.38258 * 119.99677 * 270.01831 * 3 2 1 5 5 C 1.38214 * 119.99748 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.00216 * 359.95281 * 5 4 3 7 7 C 1.38211 * 119.99781 * 0.07362 * 6 5 4 8 8 S 1.76195 * 119.99984 * 179.97438 * 7 6 5 9 9 O 1.42102 * 106.40482 * 23.49699 * 8 7 6 10 10 O 1.42102 * 106.40264 * 156.41048 * 8 7 6 11 11 N 1.65596 * 107.22143 * 269.95198 * 8 7 6 12 12 C 1.46504 * 119.99694 * 89.99846 * 11 8 7 13 13 C 1.50693 * 109.47096 * 94.34415 * 12 11 8 14 14 H 1.07998 * 120.00605 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00086 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99974 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00032 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46788 * 90.00428 * 17 15 13 19 19 H 1.48497 * 109.47143 * 210.00659 * 17 15 13 20 20 H 1.48502 * 109.47059 * 330.00665 * 17 15 13 21 21 C 1.46492 * 120.00281 * 270.00302 * 11 8 7 22 22 C 1.53000 * 109.47444 * 93.14880 * 21 11 8 23 23 C 1.53004 * 109.46883 * 63.06037 * 22 21 11 24 24 C 1.53002 * 109.47314 * 183.05809 * 22 21 11 25 25 C 1.38206 * 120.00028 * 89.99789 * 3 2 1 26 26 H 1.08998 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47295 * 300.00543 * 1 2 3 28 28 H 1.09000 * 109.46920 * 60.00286 * 1 2 3 29 29 H 1.08997 * 109.47746 * 240.00021 * 2 1 3 30 30 H 1.08997 * 109.47328 * 119.99072 * 2 1 3 31 31 H 1.08001 * 120.00070 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.99796 * 179.97438 * 5 4 3 33 33 H 1.08001 * 120.00038 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46822 * 214.33869 * 12 11 8 35 35 H 1.08996 * 109.47091 * 334.33706 * 12 11 8 36 36 H 0.96997 * 119.99713 * 179.97438 * 16 15 13 37 37 H 1.09005 * 109.47185 * 213.15064 * 21 11 8 38 38 H 1.09006 * 109.47191 * 333.14637 * 21 11 8 39 39 H 1.08996 * 109.47133 * 303.05989 * 22 21 11 40 40 H 1.09006 * 109.46686 * 52.75305 * 23 22 21 41 41 H 1.08998 * 109.47107 * 172.74944 * 23 22 21 42 42 H 1.08992 * 109.47139 * 292.75176 * 23 22 21 43 43 H 1.09004 * 109.47013 * 59.99871 * 24 22 21 44 44 H 1.08998 * 109.46865 * 180.02562 * 24 22 21 45 45 H 1.09005 * 109.47055 * 300.00395 * 24 22 21 46 46 H 1.08004 * 120.00135 * 359.72255 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2623 2.0728 -1.1974 5 6 2.7235 3.3757 -1.1974 6 6 2.9538 4.0275 -0.0001 7 6 2.7244 3.3757 1.1969 8 16 3.0186 4.2061 2.7227 9 8 2.9332 5.5972 2.4455 10 8 2.2113 3.5566 3.6952 11 7 4.5915 3.9095 3.1471 12 6 5.6538 4.8141 2.7003 13 6 5.9215 5.8414 3.7698 14 1 5.3567 5.8227 4.6901 15 6 6.8869 6.8059 3.5731 16 7 7.1202 7.7028 4.5063 17 14 7.8635 6.8389 1.9810 18 1 7.1624 7.6919 0.9879 19 1 9.2165 7.3925 2.2416 20 1 7.9877 5.4584 1.4478 21 6 4.9208 2.7425 3.9690 22 6 5.2844 1.5656 3.0615 23 6 6.5380 1.9116 2.2553 24 6 5.5543 0.3261 3.9170 25 6 2.2626 2.0725 1.1969 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 2.0824 1.5636 -2.1327 32 1 2.9035 3.8848 -2.1327 33 1 3.3145 5.0455 -0.0001 34 1 6.5620 4.2421 2.5104 35 1 5.3422 5.3159 1.7842 36 1 7.7997 8.3811 4.3680 37 1 5.7674 2.9793 4.6136 38 1 4.0603 2.4757 4.5827 39 1 4.4583 1.3637 2.3798 40 1 7.3271 2.2379 2.9329 41 1 6.8716 1.0309 1.7065 42 1 6.3084 2.7123 1.5525 43 1 4.6613 0.0797 4.4914 44 1 5.8138 -0.5121 3.2705 45 1 6.3805 0.5281 4.5988 46 1 2.0783 1.5649 2.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751246167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:11 Heat of formation + Delta-G solvation = -84.840440 kcal Electronic energy + Delta-G solvation = -27149.036749 eV Core-core repulsion = 23550.278839 eV Total energy + Delta-G solvation = -3598.757910 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.41785 -38.72092 -38.32416 -36.91144 -35.34578 -35.12880 -34.02867 -32.24992 -30.38436 -30.07658 -27.94727 -26.55200 -24.94933 -24.27254 -23.72629 -22.28066 -21.24209 -19.74593 -19.14677 -18.58636 -18.22473 -17.46639 -17.00350 -16.62285 -16.19962 -15.77338 -15.53918 -15.37431 -14.95729 -14.78220 -14.48594 -14.44475 -14.32213 -14.02838 -13.80915 -13.32490 -13.26969 -13.23597 -13.17673 -13.09323 -12.97969 -12.77001 -12.75946 -12.73892 -12.42834 -12.16714 -12.03695 -11.90288 -11.78143 -11.70832 -11.57849 -11.49630 -11.45751 -10.75612 -10.32458 -9.81196 -9.69578 -8.27749 -6.32564 -0.62524 -0.17365 0.27997 1.35553 1.39328 1.47626 2.01421 2.35412 2.54087 2.83009 3.05988 3.26698 3.72861 3.83959 3.85392 4.02990 4.05060 4.17284 4.22375 4.27259 4.29649 4.44486 4.52290 4.61324 4.72108 4.74749 4.77013 4.82457 4.95053 5.00381 5.01553 5.03472 5.09593 5.10618 5.11582 5.15898 5.25341 5.29522 5.36940 5.39922 5.45488 5.50036 5.52538 5.56200 5.78236 5.88547 6.32075 6.69838 7.29527 8.89976 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.004918 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.845085 B = 5691.564496 C = 6133.513394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 C -0.102 4.102 4 C -0.058 4.058 5 C -0.133 4.133 6 C -0.048 4.048 7 C -0.670 4.670 8 S 2.681 3.319 9 O -0.992 6.992 10 O -0.991 6.991 11 N -0.979 5.979 12 C 0.232 3.768 13 C -0.539 4.539 14 H 0.028 0.972 15 C 0.009 3.991 16 N -0.948 5.948 17 Si 0.936 3.064 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.228 1.228 21 C 0.116 3.884 22 C -0.113 4.113 23 C -0.147 4.147 24 C -0.140 4.140 25 C -0.031 4.031 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.127 0.873 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 -20.829 -14.778 26.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.103 4.103 4 C -0.076 4.076 5 C -0.152 4.152 6 C -0.068 4.068 7 C -0.761 4.761 8 S 2.776 3.224 9 O -0.983 6.983 10 O -0.981 6.981 11 N -0.816 5.816 12 C 0.107 3.893 13 C -0.579 4.579 14 H 0.046 0.954 15 C -0.188 4.188 16 N -0.589 5.589 17 Si 0.758 3.242 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.150 1.150 21 C -0.009 4.009 22 C -0.133 4.133 23 C -0.204 4.204 24 C -0.198 4.198 25 C -0.051 4.051 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.184 0.816 32 H 0.177 0.823 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.752 -20.171 -14.216 25.866 hybrid contribution 0.614 0.927 -0.255 1.141 sum -7.138 -19.244 -14.471 25.113 Atomic orbital electron populations 1.21794 0.94307 1.02786 1.01861 1.20644 0.96443 0.90299 1.04621 1.20363 0.99458 0.98070 0.92377 1.21765 0.93057 0.93858 0.98910 1.21604 0.99807 0.95784 0.97985 1.21096 0.94153 0.99417 0.92091 1.30641 1.17781 1.08625 1.19042 1.01790 0.72770 0.73122 0.74714 1.93537 1.86171 1.32318 1.86235 1.93457 1.67733 1.77337 1.59624 1.57010 1.23754 1.35987 1.64885 1.19400 0.88066 0.88059 0.93743 1.21697 1.19799 1.13198 1.03179 0.95383 1.25874 0.98055 0.94331 1.00562 1.70071 1.34554 1.17856 1.36397 0.85892 0.77976 0.81053 0.79306 1.19348 1.20373 1.15012 1.21609 1.02360 0.83743 0.93190 1.21612 0.99002 0.94951 0.97717 1.21923 0.97120 1.01449 0.99936 1.21759 1.02175 0.96063 0.99802 1.20912 0.92973 0.91183 1.00022 0.90554 0.93844 0.92228 0.88461 0.90183 0.81632 0.82292 0.85500 0.91544 0.95251 0.92399 0.90410 0.89949 0.90865 0.93116 0.91044 0.93461 0.91946 0.90719 0.92413 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.89 71.98 0.71 -1.14 16 2 C -0.08 -1.05 6.06 29.85 0.18 -0.87 16 3 C -0.10 -1.95 5.13 -19.86 -0.10 -2.05 16 4 C -0.06 -0.97 9.70 22.27 0.22 -0.75 16 5 C -0.13 -2.73 10.05 22.27 0.22 -2.50 16 6 C -0.05 -1.39 9.52 22.27 0.21 -1.18 16 7 C -0.67 -21.31 5.97 22.27 0.13 -21.18 16 8 S 2.68 111.27 5.65 -56.49 -0.32 110.95 16 9 O -0.99 -49.80 16.27 -128.00 -2.08 -51.88 16 10 O -0.99 -42.58 15.85 -128.00 -2.03 -44.61 16 11 N -0.98 -40.31 2.63 -519.85 -1.37 -41.67 16 12 C 0.23 10.79 3.35 85.63 0.29 11.08 16 13 C -0.54 -31.74 9.94 25.60 0.25 -31.48 16 14 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 15 C 0.01 0.56 5.47 84.66 0.46 1.02 16 16 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 17 Si 0.94 42.90 27.47 68.60 1.88 44.78 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.23 -9.02 6.54 99.48 0.65 -8.37 16 21 C 0.12 4.00 5.21 86.38 0.45 4.45 16 22 C -0.11 -2.92 3.14 -10.79 -0.03 -2.96 16 23 C -0.15 -3.87 7.77 71.98 0.56 -3.31 16 24 C -0.14 -2.80 9.19 71.98 0.66 -2.14 16 25 C -0.03 -0.81 7.86 22.27 0.17 -0.64 16 26 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.10 0.81 8.09 -2.39 -0.02 0.79 16 30 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 31 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.13 3.91 7.62 -2.91 -0.02 3.89 16 34 H 0.07 2.81 4.52 -2.39 -0.01 2.80 16 35 H 0.03 1.36 7.06 -2.39 -0.02 1.34 16 36 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 37 H 0.08 2.84 8.10 -2.38 -0.02 2.82 16 38 H 0.08 2.76 6.95 -2.38 -0.02 2.75 16 39 H 0.07 1.78 6.76 -2.39 -0.02 1.77 16 40 H 0.05 1.42 7.97 -2.38 -0.02 1.40 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.37 6.26 -2.39 -0.01 1.36 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.14 3.42 7.62 -2.91 -0.02 3.39 16 Total: -1.00 -78.73 379.32 1.67 -77.06 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.89 Total: 19.31 kcal Atomic # 6 Polarization: -58.04 SS G_CDS: 4.39 Total: -53.65 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -1.07 Total: -101.97 kcal Atomic # 8 Polarization: -92.38 SS G_CDS: -4.11 Total: -96.49 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.78 kcal Atomic # 16 Polarization: 111.27 SS G_CDS: -0.32 Total: 110.95 kcal Total: -78.73 1.67 -77.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751246167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.776 kcal (2) G-P(sol) polarization free energy of solvation -78.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds