Wall clock time and date at job start Tue Mar 31 2020 14:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34892 * 117.00148 * 2 1 4 4 O 1.21627 * 120.00493 * 359.97438 * 3 2 1 5 5 C 1.46400 * 119.99861 * 179.97438 * 3 2 1 6 6 C 1.36757 * 125.46182 * 180.29783 * 5 3 2 7 7 C 1.37407 * 113.28524 * 180.18203 * 6 5 3 8 8 C 1.50700 * 122.44331 * 179.82297 * 7 6 5 9 9 N 1.46897 * 109.47353 * 259.71332 * 8 7 6 10 10 C 1.46898 * 111.00075 * 190.00369 * 9 8 7 11 11 C 1.50698 * 109.47350 * 155.66125 * 10 9 8 12 12 H 1.07997 * 120.00146 * 2.96618 * 11 10 9 13 13 C 1.37879 * 119.99971 * 182.97484 * 11 10 9 14 14 N 1.31516 * 119.99875 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99995 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47134 * 90.00128 * 15 13 11 17 17 H 1.48503 * 109.47007 * 209.99650 * 15 13 11 18 18 H 1.48498 * 109.47234 * 329.99769 * 15 13 11 19 19 C 1.46894 * 111.00257 * 66.04677 * 9 8 7 20 20 C 1.53004 * 109.47345 * 197.42662 * 19 9 8 21 21 C 1.53000 * 109.46926 * 60.94938 * 20 19 9 22 22 C 1.53003 * 109.47149 * 180.95053 * 20 19 9 23 23 C 1.33863 * 115.11399 * 359.55517 * 7 6 5 24 24 C 1.50695 * 124.52350 * 180.24535 * 23 7 6 25 25 S 1.70617 * 110.96086 * 0.24755 * 23 7 6 26 26 H 1.08998 * 109.46820 * 300.00247 * 1 2 3 27 27 H 1.08997 * 109.46835 * 59.99658 * 1 2 3 28 28 H 1.08991 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.08001 * 123.35666 * 0.02562 * 6 5 3 30 30 H 1.09008 * 109.46827 * 139.71051 * 8 7 6 31 31 H 1.09004 * 109.46960 * 19.71289 * 8 7 6 32 32 H 1.09000 * 109.46754 * 275.65553 * 10 9 8 33 33 H 1.08997 * 109.47172 * 35.65370 * 10 9 8 34 34 H 0.96994 * 120.00028 * 180.02562 * 14 13 11 35 35 H 1.09008 * 109.46679 * 317.42336 * 19 9 8 36 36 H 1.08991 * 109.47251 * 77.42173 * 19 9 8 37 37 H 1.09001 * 109.46818 * 300.94797 * 20 19 9 38 38 H 1.08999 * 109.46941 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.47245 * 299.99592 * 21 20 19 40 40 H 1.09001 * 109.47487 * 60.00268 * 21 20 19 41 41 H 1.08997 * 109.46934 * 59.99864 * 22 20 19 42 42 H 1.08999 * 109.46882 * 179.97438 * 22 20 19 43 43 H 1.08997 * 109.46610 * 299.99780 * 22 20 19 44 44 H 1.09004 * 109.47111 * 89.99874 * 24 23 7 45 45 H 1.08993 * 109.47466 * 210.00016 * 24 23 7 46 46 H 1.09007 * 109.47025 * 330.00269 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4022 2.2220 -0.0005 5 6 3.5265 1.2784 0.0006 6 6 4.2605 2.4323 0.0064 7 6 5.6170 2.2131 0.0015 8 6 6.6180 3.3396 0.0025 9 7 7.1240 3.5464 -1.3609 10 6 8.2677 4.4683 -1.3639 11 6 9.1147 4.2141 -2.5841 12 1 8.8065 3.4779 -3.3116 13 6 10.2833 4.9213 -2.7716 14 7 11.0228 4.6991 -3.8362 15 14 10.8163 6.1951 -1.5135 16 1 11.6660 5.5470 -0.4823 17 1 11.5903 7.2662 -2.1909 18 1 9.6164 6.7847 -0.8672 19 6 6.0584 4.0266 -2.2508 20 6 6.4786 3.8200 -3.7074 21 6 6.6999 2.3287 -3.9677 22 6 5.3788 4.3419 -4.6343 23 6 5.9845 0.9259 0.0013 24 6 7.4129 0.4456 0.0017 25 16 4.6201 -0.0984 0.0006 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.8182 3.4175 0.0117 30 1 7.4474 3.0881 0.6637 31 1 6.1371 4.2526 0.3540 32 1 7.9056 5.4963 -1.3808 33 1 8.8656 4.3084 -0.4667 34 1 11.8451 5.1964 -3.9680 35 1 5.1424 3.4693 -2.0543 36 1 5.8844 5.0872 -2.0697 37 1 7.4037 4.3636 -3.8993 38 1 6.9996 2.1815 -5.0053 39 1 7.4834 1.9569 -3.3074 40 1 5.7747 1.7851 -3.7759 41 1 5.2212 5.4043 -4.4488 42 1 5.6784 4.1951 -5.6720 43 1 4.4538 3.7983 -4.4424 44 1 7.7570 0.3295 1.0295 45 1 7.4738 -0.5136 -0.5123 46 1 8.0412 1.1735 -0.5118 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756888758.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:05 Heat of formation + Delta-G solvation = -55.170744 kcal Electronic energy + Delta-G solvation = -26270.469376 eV Core-core repulsion = 22672.998041 eV Total energy + Delta-G solvation = -3597.471335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.42899 -39.04205 -36.96078 -36.37899 -33.65585 -32.51857 -32.02787 -29.18060 -28.27072 -27.04069 -26.38941 -25.81466 -23.91211 -23.38121 -21.11907 -20.50011 -19.05741 -18.61325 -18.36429 -16.82591 -16.75899 -16.52513 -16.08853 -15.22283 -14.74866 -14.47530 -14.21469 -13.86350 -13.68157 -13.56811 -13.38733 -12.94958 -12.80872 -12.57356 -12.47335 -12.39131 -12.24129 -11.90677 -11.67654 -11.65324 -11.48716 -11.22620 -11.20128 -11.01919 -10.85347 -10.72501 -10.54213 -10.39499 -10.15687 -10.00073 -9.91498 -9.61738 -9.01502 -8.62590 -8.52507 -8.38359 -7.36165 -6.03941 -3.99405 0.39301 1.46234 1.91867 2.19977 2.50890 2.90638 3.26711 3.35547 3.37207 4.42075 4.70370 4.83418 4.86426 4.92326 4.94351 5.20774 5.25062 5.27249 5.28305 5.60485 5.64445 5.67265 5.72344 5.78251 5.87614 5.93803 6.03097 6.12492 6.14441 6.25332 6.30838 6.34087 6.43319 6.52152 6.53572 6.59550 6.72518 6.73956 6.89878 6.97751 7.28728 7.46325 7.56265 7.65245 7.91067 8.04222 8.67138 9.09266 9.58047 11.07800 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.003553 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.570726 B = 7879.281440 C = 8345.191902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.358 6.358 3 C 0.544 3.456 4 O -0.505 6.505 5 C -0.284 4.284 6 C -0.019 4.019 7 C -0.119 4.119 8 C 0.110 3.890 9 N -0.517 5.517 10 C 0.160 3.840 11 C -0.507 4.507 12 H 0.100 0.900 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.868 3.132 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.269 1.269 19 C 0.075 3.925 20 C -0.106 4.106 21 C -0.124 4.124 22 C -0.143 4.143 23 C -0.150 4.150 24 C -0.094 4.094 25 S 0.221 5.779 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.149 0.851 30 H 0.081 0.919 31 H 0.032 0.968 32 H -0.009 1.009 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.117 0.883 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.028 0.972 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.040 0.960 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.447 -10.138 8.317 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.389 3.611 4 O -0.395 6.395 5 C -0.402 4.402 6 C -0.053 4.053 7 C -0.130 4.130 8 C -0.020 4.020 9 N -0.241 5.241 10 C 0.034 3.966 11 C -0.545 4.545 12 H 0.117 0.883 13 C -0.133 4.133 14 N -0.538 5.538 15 Si 0.695 3.305 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.194 1.194 19 C -0.054 4.054 20 C -0.125 4.125 21 C -0.181 4.181 22 C -0.201 4.201 23 C -0.270 4.270 24 C -0.152 4.152 25 S 0.491 5.509 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.167 0.833 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.009 0.991 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.134 0.866 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.546 -11.849 8.052 21.140 hybrid contribution 0.019 3.244 0.916 3.371 sum -15.527 -8.604 8.968 19.889 Atomic orbital electron populations 1.23267 0.75826 1.03718 1.02690 1.86585 1.23671 1.32430 1.84818 1.19681 0.87213 0.81563 0.72650 1.90882 1.66065 1.35855 1.46699 1.23165 0.93416 0.98808 1.24797 1.20660 0.92330 0.98187 0.94157 1.18617 0.93547 0.95018 1.05810 1.20750 0.95220 0.93019 0.92995 1.61980 1.07480 1.49586 1.05013 1.20280 0.88696 0.89364 0.98246 1.21304 1.04610 1.22592 1.06004 0.88265 1.24899 0.96414 0.96734 0.95208 1.69879 1.14604 1.41966 1.27372 0.86988 0.79034 0.82205 0.82247 1.20344 1.21409 1.19439 1.22028 0.93191 0.96374 0.93769 1.21444 1.00559 0.97810 0.92639 1.21590 1.00587 0.95654 1.00293 1.21828 0.98562 1.00061 0.99658 1.24283 1.01773 0.97179 1.03793 1.20548 0.89327 1.02621 1.02737 1.83007 0.92902 1.06982 1.68005 0.91835 0.91744 0.87948 0.83337 0.90069 0.94964 0.99123 0.96249 0.92762 0.92768 0.96114 0.86568 0.94528 0.90748 0.95248 0.93624 0.93158 0.94127 0.90772 0.91329 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.38 16 2 O -0.36 -4.22 10.42 -41.02 -0.43 -4.64 16 3 C 0.54 7.62 7.92 34.01 0.27 7.89 16 4 O -0.51 -8.14 16.64 -19.36 -0.32 -8.46 16 5 C -0.28 -3.89 6.45 -36.83 -0.24 -4.13 16 6 C -0.02 -0.26 8.51 -40.42 -0.34 -0.61 16 7 C -0.12 -1.71 4.49 -106.46 -0.48 -2.18 16 8 C 0.11 1.75 4.41 -4.98 -0.02 1.73 16 9 N -0.52 -9.76 3.49 -237.52 -0.83 -10.59 16 10 C 0.16 3.58 3.85 -4.98 -0.02 3.56 16 11 C -0.51 -13.16 7.79 -34.44 -0.27 -13.42 16 12 H 0.10 2.73 4.83 -52.49 -0.25 2.47 16 13 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 14 N -0.90 -26.31 13.96 55.43 0.77 -25.54 16 15 Si 0.87 20.69 27.41 -169.99 -4.66 16.03 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.25 6.63 56.52 0.37 -5.87 16 19 C 0.07 1.37 4.27 -3.83 -0.02 1.35 16 20 C -0.11 -2.03 2.40 -90.62 -0.22 -2.24 16 21 C -0.12 -2.30 8.40 37.16 0.31 -1.98 16 22 C -0.14 -2.36 9.19 37.16 0.34 -2.02 16 23 C -0.15 -1.97 6.28 -35.85 -0.23 -2.20 16 24 C -0.09 -1.14 9.77 36.00 0.35 -0.79 16 25 S 0.22 2.61 22.87 -107.50 -2.46 0.15 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.08 1.24 7.38 -51.92 -0.38 0.86 16 31 H 0.03 0.50 8.06 -51.93 -0.42 0.08 16 32 H -0.01 -0.21 6.93 -51.93 -0.36 -0.57 16 33 H 0.02 0.43 6.92 -51.93 -0.36 0.07 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.05 0.94 5.91 -51.92 -0.31 0.63 16 36 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 37 H 0.12 2.67 5.14 -51.93 -0.27 2.40 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.51 6.74 -51.93 -0.35 1.16 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.11 1.58 7.25 -51.93 -0.38 1.21 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -29.66 380.06 -9.07 -38.73 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.29 Total: 0.48 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 0.42 Total: -11.89 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.05 Total: -36.13 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.75 Total: -13.10 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.66 Total: 16.03 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.46 Total: 0.15 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.66 -9.07 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756888758.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.445 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds