Wall clock time and date at job start Tue Mar 31 2020 14:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34892 * 117.00148 * 2 1 4 4 O 1.21627 * 120.00493 * 359.97438 * 3 2 1 5 5 C 1.46400 * 119.99861 * 179.97438 * 3 2 1 6 6 C 1.36757 * 125.46182 * 180.29783 * 5 3 2 7 7 C 1.37407 * 113.28524 * 180.18203 * 6 5 3 8 8 C 1.50700 * 122.44331 * 179.82297 * 7 6 5 9 9 N 1.46897 * 109.47353 * 259.71332 * 8 7 6 10 10 C 1.46898 * 111.00075 * 190.00369 * 9 8 7 11 11 C 1.50698 * 109.47350 * 155.66125 * 10 9 8 12 12 H 1.07997 * 120.00146 * 2.96618 * 11 10 9 13 13 C 1.37879 * 119.99971 * 182.97484 * 11 10 9 14 14 N 1.31516 * 119.99875 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99995 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47134 * 90.00128 * 15 13 11 17 17 H 1.48503 * 109.47007 * 209.99650 * 15 13 11 18 18 H 1.48498 * 109.47234 * 329.99769 * 15 13 11 19 19 C 1.46894 * 111.00257 * 66.04677 * 9 8 7 20 20 C 1.53004 * 109.47345 * 197.42662 * 19 9 8 21 21 C 1.53000 * 109.46926 * 60.94938 * 20 19 9 22 22 C 1.53003 * 109.47149 * 180.95053 * 20 19 9 23 23 C 1.33863 * 115.11399 * 359.55517 * 7 6 5 24 24 C 1.50695 * 124.52350 * 180.24535 * 23 7 6 25 25 S 1.70617 * 110.96086 * 0.24755 * 23 7 6 26 26 H 1.08998 * 109.46820 * 300.00247 * 1 2 3 27 27 H 1.08997 * 109.46835 * 59.99658 * 1 2 3 28 28 H 1.08991 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.08001 * 123.35666 * 0.02562 * 6 5 3 30 30 H 1.09008 * 109.46827 * 139.71051 * 8 7 6 31 31 H 1.09004 * 109.46960 * 19.71289 * 8 7 6 32 32 H 1.09000 * 109.46754 * 275.65553 * 10 9 8 33 33 H 1.08997 * 109.47172 * 35.65370 * 10 9 8 34 34 H 0.96994 * 120.00028 * 180.02562 * 14 13 11 35 35 H 1.09008 * 109.46679 * 317.42336 * 19 9 8 36 36 H 1.08991 * 109.47251 * 77.42173 * 19 9 8 37 37 H 1.09001 * 109.46818 * 300.94797 * 20 19 9 38 38 H 1.08999 * 109.46941 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.47245 * 299.99592 * 21 20 19 40 40 H 1.09001 * 109.47487 * 60.00268 * 21 20 19 41 41 H 1.08997 * 109.46934 * 59.99864 * 22 20 19 42 42 H 1.08999 * 109.46882 * 179.97438 * 22 20 19 43 43 H 1.08997 * 109.46610 * 299.99780 * 22 20 19 44 44 H 1.09004 * 109.47111 * 89.99874 * 24 23 7 45 45 H 1.08993 * 109.47466 * 210.00016 * 24 23 7 46 46 H 1.09007 * 109.47025 * 330.00269 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4022 2.2220 -0.0005 5 6 3.5265 1.2784 0.0006 6 6 4.2605 2.4323 0.0064 7 6 5.6170 2.2131 0.0015 8 6 6.6180 3.3396 0.0025 9 7 7.1240 3.5464 -1.3609 10 6 8.2677 4.4683 -1.3639 11 6 9.1147 4.2141 -2.5841 12 1 8.8065 3.4779 -3.3116 13 6 10.2833 4.9213 -2.7716 14 7 11.0228 4.6991 -3.8362 15 14 10.8163 6.1951 -1.5135 16 1 11.6660 5.5470 -0.4823 17 1 11.5903 7.2662 -2.1909 18 1 9.6164 6.7847 -0.8672 19 6 6.0584 4.0266 -2.2508 20 6 6.4786 3.8200 -3.7074 21 6 6.6999 2.3287 -3.9677 22 6 5.3788 4.3419 -4.6343 23 6 5.9845 0.9259 0.0013 24 6 7.4129 0.4456 0.0017 25 16 4.6201 -0.0984 0.0006 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.8182 3.4175 0.0117 30 1 7.4474 3.0881 0.6637 31 1 6.1371 4.2526 0.3540 32 1 7.9056 5.4963 -1.3808 33 1 8.8656 4.3084 -0.4667 34 1 11.8451 5.1964 -3.9680 35 1 5.1424 3.4693 -2.0543 36 1 5.8844 5.0872 -2.0697 37 1 7.4037 4.3636 -3.8993 38 1 6.9996 2.1815 -5.0053 39 1 7.4834 1.9569 -3.3074 40 1 5.7747 1.7851 -3.7759 41 1 5.2212 5.4043 -4.4488 42 1 5.6784 4.1951 -5.6720 43 1 4.4538 3.7983 -4.4424 44 1 7.7570 0.3295 1.0295 45 1 7.4738 -0.5136 -0.5123 46 1 8.0412 1.1735 -0.5118 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756888758.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:04 Heat of formation + Delta-G solvation = -70.889320 kcal Electronic energy + Delta-G solvation = -26271.150985 eV Core-core repulsion = 22672.998041 eV Total energy + Delta-G solvation = -3598.152944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.43446 -40.25472 -38.30488 -37.43599 -35.17400 -34.44970 -33.12909 -30.58745 -29.42577 -28.33990 -27.83699 -26.98294 -25.31495 -24.55142 -22.65848 -21.76044 -20.63998 -19.71741 -19.37452 -18.66717 -17.78138 -17.46322 -17.22700 -16.74012 -16.36139 -15.87290 -15.54067 -15.22493 -14.84162 -14.66509 -14.44658 -14.41734 -14.23737 -13.99557 -13.87990 -13.63838 -13.20341 -13.10895 -13.04191 -12.94798 -12.78798 -12.71361 -12.61467 -12.27435 -12.08740 -12.01107 -11.87017 -11.82694 -11.69680 -11.58939 -11.43974 -11.35223 -10.90795 -10.57026 -9.65131 -9.42214 -8.89689 -8.13972 -6.11850 -0.65158 0.46217 0.88956 1.11939 1.37027 1.40494 1.47977 1.62188 1.83449 2.42314 3.16975 3.36942 3.79932 3.86947 4.09349 4.13986 4.18659 4.29022 4.29957 4.32299 4.45744 4.50474 4.65159 4.67615 4.70876 4.73960 4.79891 4.80557 4.86907 4.90746 4.96385 5.03346 5.09005 5.15736 5.16750 5.23284 5.27549 5.39854 5.43225 5.46820 5.67899 5.72861 5.86872 6.15744 6.48279 6.56321 6.75672 6.99191 7.48547 9.00592 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.003553 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.570726 B = 7879.281440 C = 8345.191902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.545 3.455 4 O -0.534 6.534 5 C -0.302 4.302 6 C -0.026 4.026 7 C -0.131 4.131 8 C 0.112 3.888 9 N -0.521 5.521 10 C 0.169 3.831 11 C -0.496 4.496 12 H 0.076 0.924 13 C 0.011 3.989 14 N -0.948 5.948 15 Si 0.927 3.073 16 H -0.268 1.268 17 H -0.292 1.292 18 H -0.258 1.258 19 C 0.080 3.920 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.137 4.137 23 C -0.156 4.156 24 C -0.092 4.092 25 S 0.287 5.713 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.138 0.862 29 H 0.145 0.855 30 H 0.086 0.914 31 H 0.037 0.963 32 H -0.018 1.018 33 H 0.026 0.974 34 H 0.261 0.739 35 H 0.070 0.930 36 H 0.014 0.986 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.126 -11.495 9.848 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.276 6.276 3 C 0.391 3.609 4 O -0.426 6.426 5 C -0.419 4.419 6 C -0.061 4.061 7 C -0.143 4.143 8 C -0.017 4.017 9 N -0.244 5.244 10 C 0.042 3.958 11 C -0.534 4.534 12 H 0.093 0.907 13 C -0.186 4.186 14 N -0.590 5.590 15 Si 0.753 3.247 16 H -0.194 1.194 17 H -0.219 1.219 18 H -0.182 1.182 19 C -0.048 4.048 20 C -0.125 4.125 21 C -0.170 4.170 22 C -0.195 4.195 23 C -0.277 4.277 24 C -0.151 4.151 25 S 0.557 5.443 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.156 0.844 29 H 0.163 0.837 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.000 1.000 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.032 0.968 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.102 0.898 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.252 -13.232 9.607 23.770 hybrid contribution 0.425 3.499 0.423 3.550 sum -16.827 -9.732 10.029 21.874 Atomic orbital electron populations 1.23623 0.73776 1.06090 1.02775 1.86570 1.25679 1.31105 1.84214 1.19764 0.87332 0.81796 0.72009 1.90863 1.66708 1.36869 1.48170 1.23327 0.93876 0.99754 1.24985 1.20609 0.92275 0.98419 0.94827 1.18419 0.93211 0.94932 1.07705 1.20744 0.95905 0.94028 0.91072 1.61864 1.07098 1.48305 1.07138 1.20046 0.89629 0.89542 0.96588 1.21576 1.04458 1.20930 1.06463 0.90655 1.25641 0.96877 0.99043 0.97005 1.70024 1.15422 1.43849 1.29677 0.86016 0.78932 0.79705 0.80044 1.19370 1.21869 1.18178 1.21986 0.93484 0.96187 0.93147 1.21333 0.99569 0.97622 0.93975 1.21448 1.00570 0.95419 0.99536 1.21754 0.98206 1.00397 0.99122 1.24533 1.03019 0.97424 1.02742 1.20547 0.88261 1.02386 1.03874 1.82770 0.90652 1.04775 1.66070 0.91637 0.91869 0.84445 0.83747 0.89548 0.94527 0.99998 0.95571 0.92996 0.91219 0.96763 0.90918 0.94786 0.92986 0.93424 0.93289 0.92835 0.92374 0.88709 0.89845 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.57 113.37 1.20 1.62 16 2 O -0.36 -7.63 10.42 -58.07 -0.61 -8.23 16 3 C 0.54 14.40 7.92 69.95 0.55 14.95 16 4 O -0.53 -16.72 16.64 19.42 0.32 -16.40 16 5 C -0.30 -7.69 6.45 24.05 0.16 -7.54 16 6 C -0.03 -0.71 8.51 21.73 0.18 -0.53 16 7 C -0.13 -3.58 4.49 -21.06 -0.09 -3.68 16 8 C 0.11 3.44 4.41 85.56 0.38 3.82 16 9 N -0.52 -19.50 3.49 -905.38 -3.16 -22.66 16 10 C 0.17 7.53 3.85 85.56 0.33 7.86 16 11 C -0.50 -26.35 7.79 25.60 0.20 -26.15 16 12 H 0.08 4.31 4.83 -2.91 -0.01 4.30 16 13 C 0.01 0.61 5.47 84.65 0.46 1.07 16 14 N -0.95 -57.30 13.96 21.45 0.30 -57.00 16 15 Si 0.93 43.02 27.41 68.60 1.88 44.90 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 18 H -0.26 -11.33 6.63 99.48 0.66 -10.67 16 19 C 0.08 2.90 4.27 86.31 0.37 3.27 16 20 C -0.11 -4.07 2.40 -10.79 -0.03 -4.10 16 21 C -0.11 -4.15 8.40 71.98 0.60 -3.55 16 22 C -0.14 -4.39 9.19 71.98 0.66 -3.73 16 23 C -0.16 -3.78 6.28 24.69 0.15 -3.63 16 24 C -0.09 -2.07 9.77 71.23 0.70 -1.37 16 25 S 0.29 5.94 22.87 -56.49 -1.29 4.65 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.14 0.91 8.14 -2.39 -0.02 0.90 16 29 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 30 H 0.09 2.54 7.38 -2.38 -0.02 2.52 16 31 H 0.04 1.09 8.06 -2.38 -0.02 1.07 16 32 H -0.02 -0.82 6.93 -2.39 -0.02 -0.84 16 33 H 0.03 1.14 6.92 -2.39 -0.02 1.12 16 34 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 35 H 0.07 2.33 5.91 -2.38 -0.01 2.31 16 36 H 0.01 0.53 7.74 -2.39 -0.02 0.51 16 37 H 0.07 3.46 5.14 -2.39 -0.01 3.45 16 38 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 2.14 6.74 -2.39 -0.02 2.13 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.08 2.27 7.25 -2.38 -0.02 2.25 16 Total: -1.00 -65.11 380.06 4.20 -60.92 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.92 Total: 15.50 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 5.83 Total: -21.68 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -2.86 Total: -79.66 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.28 Total: -24.63 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.90 kcal Atomic # 16 Polarization: 5.94 SS G_CDS: -1.29 Total: 4.65 kcal Total: -65.11 4.20 -60.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756888758.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.974 kcal (2) G-P(sol) polarization free energy of solvation -65.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds