Wall clock time and date at job start Tue Mar 31 2020 14:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46757 * 181.34449 * 3 2 1 5 5 C 1.52995 * 109.47223 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47223 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46957 * 180.02562 * 6 5 4 8 8 O 1.45200 * 109.46685 * 179.97438 * 7 6 5 9 9 C 1.34875 * 116.99794 * 175.29442 * 8 7 6 10 10 O 1.21588 * 120.00067 * 4.18730 * 9 8 7 11 11 C 1.46708 * 119.99894 * 184.19350 * 9 8 7 12 12 C 1.36213 * 125.44895 * 185.27090 * 11 9 8 13 13 C 1.41659 * 107.74917 * 179.97438 * 12 11 9 14 14 C 1.40035 * 133.34458 * 180.02562 * 13 12 11 15 15 C 1.36564 * 119.83504 * 180.02562 * 14 13 12 16 16 C 1.38860 * 120.60113 * 359.97356 * 15 14 13 17 17 C 1.37842 * 120.63715 * 0.29186 * 16 15 14 18 18 C 1.39090 * 119.81471 * 359.47352 * 17 16 15 19 19 N 1.37820 * 133.15399 * 180.19517 * 18 17 16 20 20 C 1.36874 * 125.62014 * 0.27436 * 19 18 17 21 21 H 1.08005 * 120.00068 * 218.36740 * 20 19 18 22 22 C 1.39017 * 119.99914 * 38.36370 * 20 19 18 23 23 N 1.31344 * 120.00086 * 17.68124 * 22 20 19 24 24 Si 1.86809 * 120.00153 * 197.67850 * 22 20 19 25 25 H 1.48497 * 109.47227 * 89.99846 * 24 22 20 26 26 H 1.48500 * 109.47053 * 210.00493 * 24 22 20 27 27 H 1.48506 * 109.46776 * 330.00070 * 24 22 20 28 28 H 4.44651 * 5.63271 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47136 * 61.35149 * 3 2 1 30 30 H 1.08999 * 109.47668 * 301.34075 * 3 2 1 31 31 H 1.08998 * 109.47075 * 59.99758 * 4 3 2 32 32 H 1.09009 * 109.47162 * 299.99818 * 4 3 2 33 33 H 1.09005 * 109.47254 * 60.00208 * 5 4 3 34 34 H 1.08999 * 109.47301 * 299.99686 * 5 4 3 35 35 H 1.08998 * 109.47075 * 59.99594 * 6 5 4 36 36 H 1.09009 * 109.47162 * 299.99654 * 6 5 4 37 37 H 1.08997 * 109.47260 * 60.00501 * 7 6 5 38 38 H 1.08999 * 109.47345 * 299.99550 * 7 6 5 39 39 H 1.08005 * 126.12965 * 0.04223 * 12 11 9 40 40 H 1.08010 * 120.08266 * 359.97438 * 14 13 12 41 41 H 1.07996 * 119.69864 * 179.97438 * 15 14 13 42 42 H 1.07997 * 119.68278 * 180.02562 * 16 15 14 43 43 H 1.08003 * 120.09628 * 179.64866 * 17 16 15 44 44 H 0.96996 * 119.99703 * 184.94200 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4430 0.0338 5 6 4.6852 1.4439 0.0332 6 6 5.1945 2.8862 0.0677 7 6 6.7245 2.8870 0.0664 8 8 7.2077 4.2559 0.0985 9 6 8.5410 4.4323 0.2002 10 8 9.2846 3.4704 0.1836 11 6 9.0941 5.7848 0.3309 12 6 10.4195 6.0989 0.3392 13 6 10.5295 7.5039 0.4830 14 6 11.6192 8.3805 0.5535 15 6 11.4043 9.7214 0.6972 16 6 10.1129 10.2261 0.7739 17 6 9.0244 9.3828 0.7123 18 6 9.2179 8.0138 0.5611 19 7 8.3536 6.9444 0.4661 20 6 6.9873 7.0183 0.4998 21 1 6.4179 6.2589 1.0153 22 6 6.3324 8.0708 -0.1294 23 7 6.9602 8.7892 -1.0321 24 14 4.5593 8.4632 0.3087 25 1 4.5302 9.4403 1.4265 26 1 3.8739 9.0434 -0.8741 27 1 3.8642 7.2176 0.7219 28 1 -1.0502 -0.0005 0.0002 29 1 3.0095 -0.4919 -0.9018 30 1 3.0097 -0.5337 0.8777 31 1 2.7917 1.9357 0.9356 32 1 2.7917 1.9775 -0.8439 33 1 5.0485 0.9514 -0.8689 34 1 5.0492 0.9094 0.9107 35 1 4.8312 3.3783 0.9699 36 1 4.8305 3.4212 -0.8096 37 1 7.0873 2.3952 -0.8361 38 1 7.0889 2.3521 0.9434 39 1 11.2398 5.4018 0.2508 40 1 12.6273 7.9970 0.4951 41 1 12.2464 10.3955 0.7518 42 1 9.9601 11.2892 0.8871 43 1 8.0239 9.7842 0.7785 44 1 6.5285 9.5670 -1.4189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760258779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:28 Heat of formation + Delta-G solvation = 2.804569 kcal Electronic energy + Delta-G solvation = -26221.905973 eV Core-core repulsion = 22491.504685 eV Total energy + Delta-G solvation = -3730.401288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51741 -39.28393 -36.85271 -35.98715 -35.73409 -33.68701 -33.61608 -30.80473 -30.70258 -29.09313 -28.26864 -26.58837 -24.94955 -23.73920 -22.13660 -21.17969 -21.03323 -20.35887 -19.23308 -18.27167 -17.98127 -17.06562 -16.40588 -15.91751 -15.59077 -15.37288 -14.84736 -14.69781 -14.49007 -14.18537 -13.93904 -13.42582 -13.33726 -12.99687 -12.91333 -12.63671 -12.56201 -12.00950 -11.85862 -11.82585 -11.69679 -11.53993 -11.29095 -11.23835 -10.99130 -10.78784 -10.76691 -10.61143 -10.38797 -10.31837 -10.29154 -10.03794 -9.94757 -9.82969 -9.17516 -8.69123 -7.24766 -6.93748 -6.59174 -4.49959 1.65365 2.57924 2.61597 2.73332 2.90918 2.99261 3.00344 3.04057 3.25564 3.75911 4.08306 4.12221 4.49963 4.67098 4.74481 4.81799 4.88480 5.05409 5.09274 5.26638 5.41886 5.42867 5.48242 5.58787 5.67327 5.76734 5.81765 5.85206 5.90120 5.93837 6.01515 6.12222 6.20109 6.28547 6.37848 6.51690 6.62888 6.83313 6.96917 7.00794 7.06262 7.12222 7.39254 7.46183 7.55454 7.63294 7.87853 7.98983 8.33614 8.45831 8.78546 9.24535 10.15698 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.003006 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.886739 B = 9312.974768 C =11044.235796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.184 4.184 3 C -0.015 4.015 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.120 4.120 7 C 0.065 3.935 8 O -0.333 6.333 9 C 0.546 3.454 10 O -0.529 6.529 11 C -0.021 4.021 12 C -0.161 4.161 13 C -0.132 4.132 14 C -0.085 4.085 15 C -0.157 4.157 16 C -0.148 4.148 17 C -0.051 4.051 18 C 0.092 3.908 19 N -0.237 5.237 20 C -0.340 4.340 21 H 0.117 0.883 22 C 0.054 3.946 23 N -0.816 5.816 24 Si 0.926 3.074 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.261 1.261 28 H 0.216 0.784 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.133 0.867 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.434 -8.270 1.966 10.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.184 4.184 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.158 4.158 7 C -0.010 4.010 8 O -0.249 6.249 9 C 0.394 3.606 10 O -0.420 6.420 11 C -0.135 4.135 12 C -0.189 4.189 13 C -0.136 4.136 14 C -0.104 4.104 15 C -0.176 4.176 16 C -0.169 4.169 17 C -0.071 4.071 18 C -0.024 4.024 19 N 0.101 4.899 20 C -0.468 4.468 21 H 0.134 0.866 22 C -0.159 4.159 23 N -0.445 5.445 24 Si 0.750 3.250 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.184 1.184 28 H 0.232 0.768 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.711 -8.496 1.728 10.964 hybrid contribution -1.055 0.151 -0.115 1.072 sum -7.766 -8.345 1.613 11.513 Atomic orbital electron populations 1.24913 0.96011 1.00979 1.01526 1.23238 0.94699 1.00304 1.00119 1.18799 0.84549 0.98418 1.03387 1.21536 0.95269 0.95130 1.03246 1.21496 0.94803 0.96355 1.02671 1.21544 0.93054 0.96963 1.04202 1.22941 0.94471 0.81625 1.01944 1.86864 1.24249 1.30046 1.83746 1.20058 0.80128 0.88293 0.72150 1.90779 1.60290 1.41575 1.49347 1.19069 0.91164 0.84720 1.18518 1.20298 0.93209 0.93859 1.11531 1.17937 0.92927 0.92866 1.09886 1.20048 0.96362 0.92660 1.01310 1.20278 0.96199 0.94788 1.06367 1.20575 0.92365 0.98035 1.05895 1.20107 0.98333 0.90165 0.98491 1.18136 0.88032 0.89710 1.06534 1.40123 1.04924 1.02528 1.42303 1.19974 0.78650 1.13306 1.34866 0.86570 1.25627 1.01104 0.96422 0.92752 1.70016 1.40019 1.15295 1.19182 0.85925 0.80704 0.79704 0.78678 1.19332 1.20200 1.18443 0.76756 0.89503 0.89508 0.91280 0.91264 0.91382 0.91419 0.90656 0.90526 0.91737 0.91757 0.84868 0.87668 0.87830 0.87601 0.86814 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.99 19.25 29.55 0.57 -1.42 16 2 C -0.18 -1.84 13.34 -37.12 -0.50 -2.34 16 3 C -0.02 -0.12 5.70 -29.51 -0.17 -0.29 16 4 C -0.11 -1.03 5.17 -26.73 -0.14 -1.17 16 5 C -0.12 -1.08 5.21 -26.73 -0.14 -1.22 16 6 C -0.12 -1.52 5.59 -26.73 -0.15 -1.67 16 7 C 0.06 1.01 5.50 37.16 0.20 1.21 16 8 O -0.33 -6.92 8.03 -40.97 -0.33 -7.25 16 9 C 0.55 12.47 7.90 34.15 0.27 12.74 16 10 O -0.53 -12.18 16.62 -19.33 -0.32 -12.50 16 11 C -0.02 -0.53 6.76 -82.28 -0.56 -1.09 16 12 C -0.16 -3.77 10.55 -39.01 -0.41 -4.18 16 13 C -0.13 -3.10 6.16 -106.89 -0.66 -3.76 16 14 C -0.08 -1.72 10.06 -39.51 -0.40 -2.12 16 15 C -0.16 -2.99 9.97 -39.96 -0.40 -3.39 16 16 C -0.15 -2.98 10.02 -39.50 -0.40 -3.38 16 17 C -0.05 -1.20 8.55 -39.41 -0.34 -1.53 16 18 C 0.09 2.31 6.08 -83.83 -0.51 1.80 16 19 N -0.24 -6.11 2.83 -56.10 -0.16 -6.27 16 20 C -0.34 -8.55 8.73 -15.01 -0.13 -8.68 16 21 H 0.12 2.83 6.88 -52.48 -0.36 2.47 16 22 C 0.05 1.30 4.43 -17.47 -0.08 1.22 16 23 N -0.82 -20.67 10.89 55.50 0.60 -20.06 16 24 Si 0.93 18.29 29.59 -169.99 -5.03 13.26 16 25 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 26 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 27 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 28 H 0.22 1.24 7.80 -54.08 -0.42 0.82 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 39 H 0.13 2.81 8.06 -52.48 -0.42 2.38 16 40 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 41 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.11 2.69 6.44 -52.48 -0.34 2.35 16 44 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -29.52 381.31 -9.58 -39.11 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.17 Total: 7.23 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -3.92 Total: -19.25 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.45 Total: -26.33 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.65 Total: -19.75 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.52 -9.58 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760258779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.911 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds