Wall clock time and date at job start Tue Mar 31 2020 14:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46757 * 181.34449 * 3 2 1 5 5 C 1.52995 * 109.47223 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47223 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46957 * 180.02562 * 6 5 4 8 8 O 1.45200 * 109.46685 * 179.97438 * 7 6 5 9 9 C 1.34875 * 116.99794 * 175.29442 * 8 7 6 10 10 O 1.21588 * 120.00067 * 4.18730 * 9 8 7 11 11 C 1.46708 * 119.99894 * 184.19350 * 9 8 7 12 12 C 1.36213 * 125.44895 * 185.27090 * 11 9 8 13 13 C 1.41659 * 107.74917 * 179.97438 * 12 11 9 14 14 C 1.40035 * 133.34458 * 180.02562 * 13 12 11 15 15 C 1.36564 * 119.83504 * 180.02562 * 14 13 12 16 16 C 1.38860 * 120.60113 * 359.97356 * 15 14 13 17 17 C 1.37842 * 120.63715 * 0.29186 * 16 15 14 18 18 C 1.39090 * 119.81471 * 359.47352 * 17 16 15 19 19 N 1.37820 * 133.15399 * 180.19517 * 18 17 16 20 20 C 1.36874 * 125.62014 * 0.27436 * 19 18 17 21 21 H 1.08005 * 120.00068 * 218.36740 * 20 19 18 22 22 C 1.39017 * 119.99914 * 38.36370 * 20 19 18 23 23 N 1.31344 * 120.00086 * 17.68124 * 22 20 19 24 24 Si 1.86809 * 120.00153 * 197.67850 * 22 20 19 25 25 H 1.48497 * 109.47227 * 89.99846 * 24 22 20 26 26 H 1.48500 * 109.47053 * 210.00493 * 24 22 20 27 27 H 1.48506 * 109.46776 * 330.00070 * 24 22 20 28 28 H 4.44651 * 5.63271 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47136 * 61.35149 * 3 2 1 30 30 H 1.08999 * 109.47668 * 301.34075 * 3 2 1 31 31 H 1.08998 * 109.47075 * 59.99758 * 4 3 2 32 32 H 1.09009 * 109.47162 * 299.99818 * 4 3 2 33 33 H 1.09005 * 109.47254 * 60.00208 * 5 4 3 34 34 H 1.08999 * 109.47301 * 299.99686 * 5 4 3 35 35 H 1.08998 * 109.47075 * 59.99594 * 6 5 4 36 36 H 1.09009 * 109.47162 * 299.99654 * 6 5 4 37 37 H 1.08997 * 109.47260 * 60.00501 * 7 6 5 38 38 H 1.08999 * 109.47345 * 299.99550 * 7 6 5 39 39 H 1.08005 * 126.12965 * 0.04223 * 12 11 9 40 40 H 1.08010 * 120.08266 * 359.97438 * 14 13 12 41 41 H 1.07996 * 119.69864 * 179.97438 * 15 14 13 42 42 H 1.07997 * 119.68278 * 180.02562 * 16 15 14 43 43 H 1.08003 * 120.09628 * 179.64866 * 17 16 15 44 44 H 0.96996 * 119.99703 * 184.94200 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4430 0.0338 5 6 4.6852 1.4439 0.0332 6 6 5.1945 2.8862 0.0677 7 6 6.7245 2.8870 0.0664 8 8 7.2077 4.2559 0.0985 9 6 8.5410 4.4323 0.2002 10 8 9.2846 3.4704 0.1836 11 6 9.0941 5.7848 0.3309 12 6 10.4195 6.0989 0.3392 13 6 10.5295 7.5039 0.4830 14 6 11.6192 8.3805 0.5535 15 6 11.4043 9.7214 0.6972 16 6 10.1129 10.2261 0.7739 17 6 9.0244 9.3828 0.7123 18 6 9.2179 8.0138 0.5611 19 7 8.3536 6.9444 0.4661 20 6 6.9873 7.0183 0.4998 21 1 6.4179 6.2589 1.0153 22 6 6.3324 8.0708 -0.1294 23 7 6.9602 8.7892 -1.0321 24 14 4.5593 8.4632 0.3087 25 1 4.5302 9.4403 1.4265 26 1 3.8739 9.0434 -0.8741 27 1 3.8642 7.2176 0.7219 28 1 -1.0502 -0.0005 0.0002 29 1 3.0095 -0.4919 -0.9018 30 1 3.0097 -0.5337 0.8777 31 1 2.7917 1.9357 0.9356 32 1 2.7917 1.9775 -0.8439 33 1 5.0485 0.9514 -0.8689 34 1 5.0492 0.9094 0.9107 35 1 4.8312 3.3783 0.9699 36 1 4.8305 3.4212 -0.8096 37 1 7.0873 2.3952 -0.8361 38 1 7.0889 2.3521 0.9434 39 1 11.2398 5.4018 0.2508 40 1 12.6273 7.9970 0.4951 41 1 12.2464 10.3955 0.7518 42 1 9.9601 11.2892 0.8871 43 1 8.0239 9.7842 0.7785 44 1 6.5285 9.5670 -1.4189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760258779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:27 Heat of formation + Delta-G solvation = -8.508730 kcal Electronic energy + Delta-G solvation = -26222.396555 eV Core-core repulsion = 22491.504685 eV Total energy + Delta-G solvation = -3730.891870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.26109 -40.95284 -37.99150 -37.61555 -37.04680 -35.43716 -34.54473 -32.50754 -31.70037 -30.75259 -29.93541 -27.61759 -26.77217 -25.23707 -23.24985 -22.75563 -22.17862 -21.92116 -20.97293 -19.75687 -18.91063 -18.72477 -17.76871 -17.55128 -17.13475 -16.60266 -16.47121 -16.33897 -15.49024 -15.33460 -15.10901 -14.91533 -14.75926 -14.63758 -14.37820 -14.03249 -13.80788 -13.62543 -13.54130 -13.07412 -12.90458 -12.79614 -12.66088 -12.59994 -12.35936 -12.17458 -12.04717 -11.95891 -11.70599 -11.68897 -11.49372 -11.40132 -11.06270 -10.98152 -10.94451 -10.44894 -9.00777 -8.71537 -8.34621 -6.37945 -0.08017 1.08240 1.17538 1.36162 1.41197 1.49428 1.70205 1.89453 1.91468 2.10730 2.29854 2.76589 2.87971 3.34369 3.46734 3.80802 3.86399 3.97487 4.13705 4.16025 4.20191 4.33720 4.42774 4.45625 4.50259 4.58532 4.71327 4.73626 4.78768 4.81855 4.85188 4.96346 4.98451 5.09264 5.17646 5.19217 5.21137 5.32449 5.33705 5.34581 5.43637 5.44604 5.73424 5.89240 5.95010 6.15604 6.28841 6.56485 6.70863 6.72473 6.99505 7.43293 8.37688 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.003006 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.886739 B = 9312.974768 C =11044.235796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.217 4.217 3 C -0.014 4.014 4 C -0.109 4.109 5 C -0.106 4.106 6 C -0.114 4.114 7 C 0.057 3.943 8 O -0.347 6.347 9 C 0.546 3.454 10 O -0.538 6.538 11 C -0.054 4.054 12 C -0.164 4.164 13 C -0.154 4.154 14 C -0.086 4.086 15 C -0.151 4.151 16 C -0.132 4.132 17 C -0.086 4.086 18 C 0.065 3.935 19 N -0.258 5.258 20 C -0.364 4.364 21 H 0.112 0.888 22 C 0.020 3.980 23 N -0.851 5.851 24 Si 0.990 3.010 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.254 1.254 28 H 0.241 0.759 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.151 0.849 40 H 0.138 0.862 41 H 0.149 0.851 42 H 0.139 0.861 43 H 0.099 0.901 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.253 -7.971 2.308 10.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.217 4.217 3 C -0.050 4.050 4 C -0.147 4.147 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.016 4.016 8 O -0.263 6.263 9 C 0.395 3.605 10 O -0.431 6.431 11 C -0.166 4.166 12 C -0.191 4.191 13 C -0.159 4.159 14 C -0.105 4.105 15 C -0.169 4.169 16 C -0.153 4.153 17 C -0.106 4.106 18 C -0.050 4.050 19 N 0.080 4.920 20 C -0.492 4.492 21 H 0.129 0.871 22 C -0.190 4.190 23 N -0.480 5.480 24 Si 0.810 3.190 25 H -0.186 1.186 26 H -0.197 1.197 27 H -0.177 1.177 28 H 0.257 0.743 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.168 0.832 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.157 0.843 43 H 0.118 0.882 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.533 -8.210 2.073 10.695 hybrid contribution -1.007 0.088 -0.220 1.034 sum -7.540 -8.123 1.854 11.237 Atomic orbital electron populations 1.25710 0.97042 1.00071 1.00815 1.23832 0.95762 1.01192 1.00914 1.18837 0.83837 0.97758 1.04558 1.21455 0.94808 0.95850 1.02574 1.21443 0.94954 0.93990 1.03954 1.21562 0.90827 0.99276 1.03469 1.23351 0.96230 0.79387 1.02675 1.86843 1.23080 1.33166 1.83197 1.19931 0.80829 0.87766 0.72012 1.90743 1.60654 1.41610 1.50079 1.19564 0.92049 0.85540 1.19464 1.20606 0.93323 0.94465 1.10748 1.18368 0.93518 0.93306 1.10659 1.20490 0.96958 0.92948 1.00123 1.20776 0.97008 0.94974 1.04186 1.21052 0.92093 0.99325 1.02807 1.20204 0.98905 0.90092 1.01373 1.18661 0.88861 0.90471 1.07022 1.40313 1.05233 1.03006 1.43482 1.20160 0.79037 1.14176 1.35819 0.87063 1.26461 1.04750 0.95691 0.92061 1.70093 1.41779 1.15908 1.20252 0.84985 0.75762 0.79682 0.78537 1.18607 1.19740 1.17743 0.74303 0.88355 0.88272 0.91920 0.92053 0.90181 0.90055 0.91239 0.91470 0.91075 0.90878 0.83170 0.84391 0.83298 0.84343 0.88246 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.76 19.25 74.32 1.43 -2.33 16 2 C -0.22 -4.14 13.34 31.13 0.42 -3.73 16 3 C -0.01 -0.20 5.70 28.79 0.16 -0.04 16 4 C -0.11 -1.88 5.17 30.59 0.16 -1.72 16 5 C -0.11 -1.85 5.21 30.59 0.16 -1.69 16 6 C -0.11 -2.88 5.59 30.60 0.17 -2.70 16 7 C 0.06 1.80 5.50 71.98 0.40 2.19 16 8 O -0.35 -14.94 8.03 -57.88 -0.46 -15.40 16 9 C 0.55 25.82 7.90 70.03 0.55 26.37 16 10 O -0.54 -25.26 16.62 19.55 0.32 -24.93 16 11 C -0.05 -2.74 6.76 39.87 0.27 -2.47 16 12 C -0.16 -7.77 10.55 22.64 0.24 -7.53 16 13 C -0.15 -7.26 6.16 -21.34 -0.13 -7.39 16 14 C -0.09 -3.30 10.06 22.31 0.22 -3.08 16 15 C -0.15 -5.21 9.97 22.03 0.22 -4.99 16 16 C -0.13 -5.05 10.02 22.32 0.22 -4.82 16 17 C -0.09 -4.04 8.55 22.38 0.19 -3.84 16 18 C 0.07 3.37 6.08 39.07 0.24 3.60 16 19 N -0.26 -13.82 2.83 -331.41 -0.94 -14.76 16 20 C -0.36 -19.10 8.73 84.09 0.73 -18.37 16 21 H 0.11 5.70 6.88 -2.91 -0.02 5.68 16 22 C 0.02 0.99 4.43 84.95 0.38 1.37 16 23 N -0.85 -44.35 10.89 21.67 0.24 -44.11 16 24 Si 0.99 38.12 29.59 68.60 2.03 40.15 16 25 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 26 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 27 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 28 H 0.24 2.35 7.80 -4.41 -0.03 2.32 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.07 2.16 8.09 -2.39 -0.02 2.14 16 39 H 0.15 6.35 8.06 -2.91 -0.02 6.32 16 40 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 41 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 42 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.10 4.85 6.44 -2.91 -0.02 4.83 16 44 H 0.29 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -66.20 381.31 8.21 -57.99 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.99 Total: 32.23 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 6.03 Total: -31.16 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.70 Total: -58.87 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.14 Total: -40.34 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -66.20 8.21 -57.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760258779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.486 kcal (2) G-P(sol) polarization free energy of solvation -66.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds