Wall clock time and date at job start Tue Mar 31 2020 14:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46803 * 193.50991 * 3 2 1 5 5 C 1.53002 * 109.46894 * 59.99984 * 4 3 2 6 6 C 1.53001 * 109.47228 * 299.99849 * 4 3 2 7 7 C 1.53001 * 109.47371 * 180.02562 * 4 3 2 8 8 O 1.45192 * 109.47343 * 181.28637 * 7 4 3 9 9 C 1.34866 * 116.99893 * 175.91219 * 8 7 4 10 10 O 1.21587 * 120.00330 * 4.55316 * 9 8 7 11 11 C 1.46715 * 119.99764 * 184.56348 * 9 8 7 12 12 C 1.36217 * 125.44833 * 182.35495 * 11 9 8 13 13 C 1.41656 * 107.74427 * 179.97438 * 12 11 9 14 14 C 1.40042 * 133.33836 * 180.02562 * 13 12 11 15 15 C 1.36565 * 119.83300 * 180.02562 * 14 13 12 16 16 C 1.38871 * 120.60225 * 359.97438 * 15 14 13 17 17 C 1.37846 * 120.63209 * 0.28648 * 16 15 14 18 18 C 1.39094 * 119.81808 * 359.47100 * 17 16 15 19 19 N 1.37821 * 133.15163 * 180.18701 * 18 17 16 20 20 C 1.36868 * 125.61989 * 0.28734 * 19 18 17 21 21 H 1.08003 * 120.00064 * 218.14332 * 20 19 18 22 22 C 1.39027 * 120.00125 * 38.14924 * 20 19 18 23 23 N 1.31336 * 119.99895 * 18.32143 * 22 20 19 24 24 Si 1.86804 * 119.99910 * 198.32673 * 22 20 19 25 25 H 1.48504 * 109.46729 * 64.95792 * 24 22 20 26 26 H 1.48497 * 109.47127 * 184.95443 * 24 22 20 27 27 H 1.48494 * 109.47255 * 304.95868 * 24 22 20 28 28 H 4.44651 * 5.63324 * 179.97438 * 4 1 2 29 29 H 1.08993 * 109.47558 * 73.51341 * 3 2 1 30 30 H 1.08997 * 109.47500 * 313.50633 * 3 2 1 31 31 H 1.09001 * 109.46906 * 183.31586 * 5 4 3 32 32 H 1.08995 * 109.47161 * 303.31560 * 5 4 3 33 33 H 1.09001 * 109.47154 * 63.32169 * 5 4 3 34 34 H 1.08993 * 109.47085 * 305.33967 * 6 4 3 35 35 H 1.09003 * 109.46907 * 65.33620 * 6 4 3 36 36 H 1.09002 * 109.47049 * 185.32931 * 6 4 3 37 37 H 1.09001 * 109.47057 * 61.27587 * 7 4 3 38 38 H 1.09007 * 109.46848 * 301.28773 * 7 4 3 39 39 H 1.07997 * 126.12698 * 0.04920 * 12 11 9 40 40 H 1.08002 * 120.08561 * 359.97438 * 14 13 12 41 41 H 1.07996 * 119.70431 * 180.02562 * 15 14 13 42 42 H 1.07995 * 119.68704 * 180.02562 * 16 15 14 43 43 H 1.08003 * 120.09097 * 179.65365 * 17 16 15 44 44 H 0.97004 * 119.99745 * 184.86831 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4035 0.3370 5 6 2.6450 1.8127 1.7202 6 6 2.6449 2.3964 -0.7092 7 6 4.6853 1.4045 0.3364 8 8 5.1686 2.7282 0.6860 9 6 6.5027 2.8790 0.8137 10 8 7.2466 1.9521 0.5571 11 6 7.0564 4.1614 1.2624 12 6 8.3820 4.4496 1.3862 13 6 8.4925 5.7855 1.8441 14 6 9.5827 6.6110 2.1462 15 6 9.3683 7.8885 2.5787 16 6 8.0770 8.3790 2.7219 17 6 6.9879 7.5840 2.4359 18 6 7.1810 6.2810 1.9890 19 7 6.3163 5.2705 1.6277 20 6 4.9500 5.3516 1.6301 21 1 4.3591 4.5022 1.9395 22 6 4.3228 6.5275 1.2342 23 7 4.9822 7.4185 0.5299 24 14 2.5420 6.8401 1.7040 25 1 2.4342 6.9653 3.1799 26 1 2.0748 8.0966 1.0653 27 1 1.7016 5.7069 1.2407 28 1 -1.0502 -0.0004 -0.0003 29 1 3.0095 -0.2908 -0.9853 30 1 3.0097 -0.7066 0.7453 31 1 2.9585 2.8342 1.9355 32 1 1.5567 1.7553 1.7376 33 1 3.0565 1.1401 2.4728 34 1 2.9282 2.0535 -1.7042 35 1 1.5590 2.4662 -0.6445 36 1 3.0836 3.3769 -0.5240 37 1 5.0484 1.1352 -0.6554 38 1 5.0494 0.6805 1.0655 39 1 9.2019 3.7800 1.1723 40 1 10.5905 6.2380 2.0382 41 1 10.2106 8.5234 2.8106 42 1 7.9246 9.3917 3.0646 43 1 5.9874 7.9726 2.5557 44 1 4.5685 8.2689 0.3138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760272937.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:32 Heat of formation + Delta-G solvation = 12.768745 kcal Electronic energy + Delta-G solvation = -27641.633990 eV Core-core repulsion = 23911.664781 eV Total energy + Delta-G solvation = -3729.969209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54243 -39.48136 -37.74655 -35.97172 -35.44264 -33.65052 -32.57314 -30.74141 -29.14489 -28.35444 -27.61048 -27.09347 -26.53729 -24.94378 -23.37182 -21.05321 -20.46922 -19.45571 -19.27751 -18.09074 -17.76045 -17.03961 -15.95993 -15.85849 -15.50524 -14.90171 -14.78128 -14.58940 -14.54915 -14.08323 -13.60735 -13.31326 -13.08954 -12.97792 -12.91162 -12.80487 -12.32661 -11.99381 -11.90777 -11.79083 -11.62487 -11.28016 -11.25088 -11.15627 -10.90784 -10.80610 -10.71499 -10.64857 -10.28256 -10.14568 -10.11369 -10.04681 -9.93952 -9.83702 -9.17013 -8.69455 -7.25288 -6.94328 -6.60308 -4.50005 1.65085 2.70102 2.73100 2.80188 2.90877 2.99134 2.99977 3.01486 3.30542 3.74873 4.07903 4.29016 4.51622 4.66873 4.80310 4.86366 4.99447 5.05049 5.34144 5.44296 5.53619 5.64318 5.72907 5.79641 5.83574 5.92756 5.93378 5.94384 6.08447 6.12269 6.13717 6.22011 6.37346 6.48551 6.52038 6.60126 6.62406 6.82467 6.97661 7.00322 7.05996 7.11686 7.45890 7.55133 7.57284 7.62836 7.87416 7.98719 8.32851 8.45374 8.78179 9.24080 10.14330 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.004400 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.385031 B = 6362.698770 C = 7979.501190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.167 4.167 3 C -0.005 4.005 4 C -0.055 4.055 5 C -0.143 4.143 6 C -0.144 4.144 7 C 0.074 3.926 8 O -0.326 6.326 9 C 0.545 3.455 10 O -0.529 6.529 11 C -0.021 4.021 12 C -0.162 4.162 13 C -0.131 4.131 14 C -0.085 4.085 15 C -0.157 4.157 16 C -0.148 4.148 17 C -0.052 4.052 18 C 0.091 3.909 19 N -0.236 5.236 20 C -0.339 4.339 21 H 0.118 0.882 22 C 0.056 3.944 23 N -0.815 5.815 24 Si 0.920 3.080 25 H -0.265 1.265 26 H -0.277 1.277 27 H -0.260 1.260 28 H 0.214 0.786 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.133 0.867 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 -6.548 0.678 8.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C -0.042 4.042 4 C -0.055 4.055 5 C -0.201 4.201 6 C -0.201 4.201 7 C 0.000 4.000 8 O -0.242 6.242 9 C 0.393 3.607 10 O -0.420 6.420 11 C -0.134 4.134 12 C -0.190 4.190 13 C -0.135 4.135 14 C -0.104 4.104 15 C -0.176 4.176 16 C -0.169 4.169 17 C -0.071 4.071 18 C -0.025 4.025 19 N 0.103 4.897 20 C -0.467 4.467 21 H 0.136 0.864 22 C -0.158 4.158 23 N -0.443 5.443 24 Si 0.743 3.257 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.185 1.185 28 H 0.231 0.769 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.151 0.849 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.131 0.869 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.303 -6.698 0.370 8.551 hybrid contribution -1.034 0.157 -0.111 1.052 sum -6.337 -6.541 0.259 9.111 Atomic orbital electron populations 1.24813 0.95863 1.01222 1.01831 1.22811 0.94189 0.99884 0.99774 1.18767 0.85278 0.97008 1.03096 1.20513 0.92664 0.94390 0.97906 1.21900 1.00638 1.03042 0.94473 1.21890 1.00868 1.00213 0.97098 1.22929 0.93035 0.83205 1.00862 1.86839 1.24009 1.32771 1.80561 1.20062 0.80129 0.86810 0.73671 1.90783 1.60328 1.41413 1.49471 1.19057 0.91044 0.88701 1.14617 1.20291 0.93181 0.95499 1.10006 1.17929 0.92927 0.94357 1.08334 1.20052 0.96376 0.93590 1.00391 1.20282 0.96200 0.95861 1.05306 1.20577 0.92362 0.98692 1.05274 1.20101 0.98363 0.90944 0.97702 1.18123 0.88155 0.91850 1.04357 1.40107 1.04925 1.06915 1.37776 1.19945 0.78579 1.02411 1.45801 0.86449 1.25600 1.00997 0.96102 0.93091 1.70008 1.39822 1.07380 1.27120 0.86082 0.81104 0.78791 0.79691 1.18961 1.20203 1.18474 0.76865 0.89295 0.89317 0.90724 0.92601 0.92838 0.92947 0.92693 0.90392 0.91439 0.91492 0.84910 0.87684 0.87844 0.87616 0.86858 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.35 19.25 29.55 0.57 -1.78 16 2 C -0.17 -1.96 10.84 -37.12 -0.40 -2.36 16 3 C 0.00 -0.05 4.79 -29.52 -0.14 -0.20 16 4 C -0.05 -0.73 0.63 -154.50 -0.10 -0.83 16 5 C -0.14 -2.01 8.08 37.16 0.30 -1.71 16 6 C -0.14 -2.08 8.05 37.16 0.30 -1.78 16 7 C 0.07 1.14 4.35 37.16 0.16 1.31 16 8 O -0.33 -6.48 6.60 -40.95 -0.27 -6.75 16 9 C 0.55 12.13 7.91 34.15 0.27 12.40 16 10 O -0.53 -11.94 16.63 -19.33 -0.32 -12.26 16 11 C -0.02 -0.50 6.76 -82.27 -0.56 -1.06 16 12 C -0.16 -3.74 10.55 -39.01 -0.41 -4.15 16 13 C -0.13 -3.05 6.16 -106.89 -0.66 -3.71 16 14 C -0.09 -1.72 10.06 -39.51 -0.40 -2.12 16 15 C -0.16 -2.98 9.97 -39.95 -0.40 -3.38 16 16 C -0.15 -2.97 10.02 -39.49 -0.40 -3.36 16 17 C -0.05 -1.19 8.56 -39.41 -0.34 -1.53 16 18 C 0.09 2.26 6.08 -83.83 -0.51 1.75 16 19 N -0.24 -5.95 2.83 -56.10 -0.16 -6.11 16 20 C -0.34 -8.30 8.76 -15.01 -0.13 -8.44 16 21 H 0.12 2.76 5.96 -52.48 -0.31 2.45 16 22 C 0.06 1.31 4.41 -17.47 -0.08 1.24 16 23 N -0.81 -20.36 10.93 55.50 0.61 -19.75 16 24 Si 0.92 18.08 29.59 -169.99 -5.03 13.04 16 25 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 26 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 27 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 28 H 0.21 1.57 7.80 -54.08 -0.42 1.15 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.21 6.91 -51.93 -0.36 0.85 16 32 H 0.05 0.74 7.11 -51.93 -0.37 0.37 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.76 7.42 -51.93 -0.39 0.38 16 36 H 0.08 1.35 7.56 -51.93 -0.39 0.95 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.97 8.11 -51.92 -0.42 0.55 16 39 H 0.13 2.77 8.06 -52.49 -0.42 2.35 16 40 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 42 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 43 H 0.11 2.65 6.44 -52.48 -0.34 2.31 16 44 H 0.28 6.58 8.31 -40.82 -0.34 6.25 16 LS Contribution 371.71 15.07 5.60 5.60 Total: -1.00 -28.31 371.71 -8.43 -36.73 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.94 Total: 9.20 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.91 Total: -19.71 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.45 Total: -25.86 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.59 Total: -19.01 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.31 -8.43 -36.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760272937.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.502 kcal (2) G-P(sol) polarization free energy of solvation -28.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds