Wall clock time and date at job start Tue Mar 31 2020 14:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46803 * 193.50991 * 3 2 1 5 5 C 1.53002 * 109.46894 * 59.99984 * 4 3 2 6 6 C 1.53001 * 109.47228 * 299.99849 * 4 3 2 7 7 C 1.53001 * 109.47371 * 180.02562 * 4 3 2 8 8 O 1.45192 * 109.47343 * 181.28637 * 7 4 3 9 9 C 1.34866 * 116.99893 * 175.91219 * 8 7 4 10 10 O 1.21587 * 120.00330 * 4.55316 * 9 8 7 11 11 C 1.46715 * 119.99764 * 184.56348 * 9 8 7 12 12 C 1.36217 * 125.44833 * 182.35495 * 11 9 8 13 13 C 1.41656 * 107.74427 * 179.97438 * 12 11 9 14 14 C 1.40042 * 133.33836 * 180.02562 * 13 12 11 15 15 C 1.36565 * 119.83300 * 180.02562 * 14 13 12 16 16 C 1.38871 * 120.60225 * 359.97438 * 15 14 13 17 17 C 1.37846 * 120.63209 * 0.28648 * 16 15 14 18 18 C 1.39094 * 119.81808 * 359.47100 * 17 16 15 19 19 N 1.37821 * 133.15163 * 180.18701 * 18 17 16 20 20 C 1.36868 * 125.61989 * 0.28734 * 19 18 17 21 21 H 1.08003 * 120.00064 * 218.14332 * 20 19 18 22 22 C 1.39027 * 120.00125 * 38.14924 * 20 19 18 23 23 N 1.31336 * 119.99895 * 18.32143 * 22 20 19 24 24 Si 1.86804 * 119.99910 * 198.32673 * 22 20 19 25 25 H 1.48504 * 109.46729 * 64.95792 * 24 22 20 26 26 H 1.48497 * 109.47127 * 184.95443 * 24 22 20 27 27 H 1.48494 * 109.47255 * 304.95868 * 24 22 20 28 28 H 4.44651 * 5.63324 * 179.97438 * 4 1 2 29 29 H 1.08993 * 109.47558 * 73.51341 * 3 2 1 30 30 H 1.08997 * 109.47500 * 313.50633 * 3 2 1 31 31 H 1.09001 * 109.46906 * 183.31586 * 5 4 3 32 32 H 1.08995 * 109.47161 * 303.31560 * 5 4 3 33 33 H 1.09001 * 109.47154 * 63.32169 * 5 4 3 34 34 H 1.08993 * 109.47085 * 305.33967 * 6 4 3 35 35 H 1.09003 * 109.46907 * 65.33620 * 6 4 3 36 36 H 1.09002 * 109.47049 * 185.32931 * 6 4 3 37 37 H 1.09001 * 109.47057 * 61.27587 * 7 4 3 38 38 H 1.09007 * 109.46848 * 301.28773 * 7 4 3 39 39 H 1.07997 * 126.12698 * 0.04920 * 12 11 9 40 40 H 1.08002 * 120.08561 * 359.97438 * 14 13 12 41 41 H 1.07996 * 119.70431 * 180.02562 * 15 14 13 42 42 H 1.07995 * 119.68704 * 180.02562 * 16 15 14 43 43 H 1.08003 * 120.09097 * 179.65365 * 17 16 15 44 44 H 0.97004 * 119.99745 * 184.86831 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4035 0.3370 5 6 2.6450 1.8127 1.7202 6 6 2.6449 2.3964 -0.7092 7 6 4.6853 1.4045 0.3364 8 8 5.1686 2.7282 0.6860 9 6 6.5027 2.8790 0.8137 10 8 7.2466 1.9521 0.5571 11 6 7.0564 4.1614 1.2624 12 6 8.3820 4.4496 1.3862 13 6 8.4925 5.7855 1.8441 14 6 9.5827 6.6110 2.1462 15 6 9.3683 7.8885 2.5787 16 6 8.0770 8.3790 2.7219 17 6 6.9879 7.5840 2.4359 18 6 7.1810 6.2810 1.9890 19 7 6.3163 5.2705 1.6277 20 6 4.9500 5.3516 1.6301 21 1 4.3591 4.5022 1.9395 22 6 4.3228 6.5275 1.2342 23 7 4.9822 7.4185 0.5299 24 14 2.5420 6.8401 1.7040 25 1 2.4342 6.9653 3.1799 26 1 2.0748 8.0966 1.0653 27 1 1.7016 5.7069 1.2407 28 1 -1.0502 -0.0004 -0.0003 29 1 3.0095 -0.2908 -0.9853 30 1 3.0097 -0.7066 0.7453 31 1 2.9585 2.8342 1.9355 32 1 1.5567 1.7553 1.7376 33 1 3.0565 1.1401 2.4728 34 1 2.9282 2.0535 -1.7042 35 1 1.5590 2.4662 -0.6445 36 1 3.0836 3.3769 -0.5240 37 1 5.0484 1.1352 -0.6554 38 1 5.0494 0.6805 1.0655 39 1 9.2019 3.7800 1.1723 40 1 10.5905 6.2380 2.0382 41 1 10.2106 8.5234 2.8106 42 1 7.9246 9.3917 3.0646 43 1 5.9874 7.9726 2.5557 44 1 4.5685 8.2689 0.3138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760272937.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:31 Heat of formation + Delta-G solvation = 2.011554 kcal Electronic energy + Delta-G solvation = -27642.100457 eV Core-core repulsion = 23911.664781 eV Total energy + Delta-G solvation = -3730.435676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.25494 -41.05574 -39.00291 -37.62169 -36.94920 -35.42403 -33.49972 -32.49314 -30.80674 -30.02617 -28.56412 -28.26298 -27.87108 -26.74219 -24.97527 -22.75700 -22.10491 -21.00806 -20.59271 -19.78243 -18.86244 -18.46874 -17.56317 -17.38957 -17.14119 -16.49490 -16.38067 -15.88870 -15.74864 -15.22061 -15.17029 -14.81873 -14.66025 -14.50504 -14.28939 -14.06820 -13.89206 -13.61580 -13.49099 -13.17440 -12.97863 -12.85350 -12.76728 -12.39053 -12.30175 -12.22215 -12.07889 -12.02210 -11.91085 -11.60964 -11.49759 -11.48086 -11.00401 -10.96103 -10.92145 -10.43517 -8.99745 -8.70245 -8.34081 -6.35120 -0.06052 1.08914 1.19657 1.34752 1.41001 1.45437 1.61855 1.97353 2.02343 2.10290 2.31845 2.78807 2.88946 3.35208 3.39584 3.68678 3.81561 3.87590 4.06044 4.20776 4.30723 4.37891 4.41093 4.43061 4.51777 4.71424 4.72366 4.72962 4.80307 4.81593 4.95180 4.96462 4.99664 5.01065 5.16815 5.18364 5.21200 5.33334 5.34296 5.37222 5.41310 5.44742 5.75596 5.90290 5.95798 6.16782 6.30551 6.57536 6.74316 6.76275 7.01875 7.45204 8.37809 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.004400 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.385031 B = 6362.698770 C = 7979.501190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C 0.001 3.999 4 C -0.047 4.047 5 C -0.141 4.141 6 C -0.139 4.139 7 C 0.067 3.933 8 O -0.334 6.334 9 C 0.546 3.454 10 O -0.539 6.539 11 C -0.051 4.051 12 C -0.166 4.166 13 C -0.153 4.153 14 C -0.088 4.088 15 C -0.152 4.152 16 C -0.134 4.134 17 C -0.085 4.085 18 C 0.064 3.936 19 N -0.255 5.255 20 C -0.359 4.359 21 H 0.115 0.885 22 C 0.023 3.977 23 N -0.849 5.849 24 Si 0.979 3.021 25 H -0.260 1.260 26 H -0.272 1.272 27 H -0.255 1.255 28 H 0.241 0.759 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.149 0.851 40 H 0.137 0.863 41 H 0.148 0.852 42 H 0.138 0.862 43 H 0.099 0.901 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 -6.686 1.066 8.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.200 4.200 3 C -0.035 4.035 4 C -0.047 4.047 5 C -0.198 4.198 6 C -0.196 4.196 7 C -0.007 4.007 8 O -0.250 6.250 9 C 0.394 3.606 10 O -0.431 6.431 11 C -0.164 4.164 12 C -0.194 4.194 13 C -0.157 4.157 14 C -0.106 4.106 15 C -0.170 4.170 16 C -0.154 4.154 17 C -0.105 4.105 18 C -0.051 4.051 19 N 0.082 4.918 20 C -0.487 4.487 21 H 0.133 0.867 22 C -0.187 4.187 23 N -0.479 5.479 24 Si 0.800 3.200 25 H -0.185 1.185 26 H -0.196 1.196 27 H -0.178 1.178 28 H 0.258 0.742 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.167 0.833 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.117 0.883 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.378 -6.848 0.761 8.741 hybrid contribution -0.931 0.216 -0.219 0.980 sum -6.309 -6.632 0.542 9.170 Atomic orbital electron populations 1.25595 0.96771 0.99737 1.00675 1.23096 0.94786 1.01209 1.00940 1.18711 0.85271 0.95108 1.04424 1.20476 0.91043 0.96007 0.97191 1.21860 1.01175 1.01490 0.95244 1.21829 1.00973 0.98697 0.98144 1.23295 0.94386 0.81422 1.01561 1.86828 1.22648 1.35349 1.80151 1.19917 0.80892 0.86259 0.73499 1.90748 1.60737 1.41491 1.50149 1.19545 0.91872 0.89504 1.15441 1.20588 0.93340 0.95962 1.09461 1.18350 0.93494 0.94828 1.09059 1.20488 0.96979 0.93771 0.99384 1.20770 0.96994 0.95808 1.03443 1.21045 0.92108 0.99572 1.02717 1.20197 0.98907 0.91170 1.00230 1.18637 0.88994 0.92569 1.04927 1.40297 1.05235 1.07428 1.38807 1.20140 0.78883 1.03001 1.46631 0.86717 1.26368 1.04422 0.95451 0.92462 1.70088 1.41503 1.07863 1.28420 0.85200 0.76566 0.78791 0.79479 1.18477 1.19648 1.17848 0.74241 0.87889 0.87734 0.93665 0.91786 0.91759 0.91829 0.92094 0.93930 0.90678 0.90335 0.83293 0.84475 0.83402 0.84431 0.88285 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.01 19.25 74.32 1.43 -2.58 16 2 C -0.20 -4.33 10.84 31.12 0.34 -3.99 16 3 C 0.00 0.02 4.79 28.79 0.14 0.16 16 4 C -0.05 -1.24 0.63 -52.18 -0.03 -1.28 16 5 C -0.14 -3.93 8.08 71.98 0.58 -3.35 16 6 C -0.14 -4.05 8.05 71.98 0.58 -3.48 16 7 C 0.07 2.07 4.35 71.98 0.31 2.38 16 8 O -0.33 -13.81 6.60 -57.80 -0.38 -14.19 16 9 C 0.55 25.15 7.91 70.04 0.55 25.70 16 10 O -0.54 -24.73 16.63 19.55 0.33 -24.41 16 11 C -0.05 -2.55 6.76 39.88 0.27 -2.29 16 12 C -0.17 -7.79 10.55 22.64 0.24 -7.55 16 13 C -0.15 -7.15 6.16 -21.34 -0.13 -7.28 16 14 C -0.09 -3.34 10.06 22.32 0.22 -3.12 16 15 C -0.15 -5.24 9.97 22.03 0.22 -5.02 16 16 C -0.13 -5.11 10.02 22.33 0.22 -4.89 16 17 C -0.09 -3.98 8.56 22.38 0.19 -3.79 16 18 C 0.06 3.28 6.08 39.07 0.24 3.52 16 19 N -0.26 -13.45 2.83 -331.40 -0.94 -14.39 16 20 C -0.36 -18.45 8.76 84.10 0.74 -17.72 16 21 H 0.12 5.74 5.96 -2.91 -0.02 5.72 16 22 C 0.02 1.12 4.41 84.96 0.37 1.50 16 23 N -0.85 -44.02 10.93 21.67 0.24 -43.79 16 24 Si 0.98 38.08 29.59 68.60 2.03 40.11 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 26 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 27 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 28 H 0.24 2.82 7.80 -4.41 -0.03 2.78 16 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.52 6.91 -2.39 -0.02 1.51 16 32 H 0.06 1.66 7.11 -2.39 -0.02 1.64 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.67 7.42 -2.39 -0.02 1.65 16 36 H 0.04 1.53 7.56 -2.39 -0.02 1.51 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 38 H 0.08 2.24 8.11 -2.38 -0.02 2.22 16 39 H 0.15 6.26 8.06 -2.91 -0.02 6.23 16 40 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 42 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 43 H 0.10 4.80 6.44 -2.91 -0.02 4.79 16 44 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -63.76 371.71 8.76 -55.00 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 1.00 Total: 34.74 kcal Atomic # 6 Polarization: -39.56 SS G_CDS: 6.49 Total: -33.07 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.70 Total: -58.18 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.06 Total: -38.60 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -63.76 8.76 -55.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760272937.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.008 kcal (2) G-P(sol) polarization free energy of solvation -63.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds