Wall clock time and date at job start Tue Mar 31 2020 15:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47268 * 2 1 4 4 C 1.53004 * 109.46990 * 119.99937 * 2 1 3 5 5 N 1.46899 * 109.47213 * 65.92117 * 4 2 1 6 6 C 1.46899 * 111.00047 * 211.90925 * 5 4 2 7 7 C 1.50702 * 109.47446 * 71.87371 * 6 5 4 8 8 H 1.07994 * 119.99597 * 5.04173 * 7 6 5 9 9 C 1.37871 * 119.99824 * 185.04303 * 7 6 5 10 10 N 1.31514 * 120.00305 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99987 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47298 * 89.99766 * 11 9 7 13 13 H 1.48496 * 109.47290 * 209.99832 * 11 9 7 14 14 H 1.48504 * 109.47023 * 330.00130 * 11 9 7 15 15 C 1.46895 * 111.00015 * 87.95058 * 5 4 2 16 16 C 1.50705 * 109.47569 * 293.14578 * 15 5 4 17 17 C 1.38228 * 120.00238 * 97.65806 * 16 15 5 18 18 C 1.38229 * 120.00485 * 179.97438 * 17 16 15 19 19 C 1.38237 * 119.99903 * 0.02692 * 18 17 16 20 20 S 1.76198 * 120.00207 * 179.97438 * 19 18 17 21 21 C 1.81395 * 104.45196 * 89.99610 * 20 19 18 22 22 O 1.42099 * 104.27325 * 333.92541 * 20 19 18 23 23 O 1.42101 * 104.27709 * 206.06960 * 20 19 18 24 24 C 1.38237 * 119.99750 * 0.24605 * 19 18 17 25 25 C 1.38233 * 119.99812 * 359.50338 * 24 19 18 26 26 H 1.09000 * 109.47376 * 304.84431 * 1 2 3 27 27 H 1.09003 * 109.47094 * 64.84538 * 1 2 3 28 28 H 1.08999 * 109.46960 * 184.84271 * 1 2 3 29 29 H 1.09001 * 109.47125 * 239.99573 * 2 1 3 30 30 H 1.09002 * 109.47377 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47124 * 299.99784 * 3 2 1 32 32 H 1.09001 * 109.47396 * 59.99739 * 3 2 1 33 33 H 1.09001 * 109.47212 * 305.91941 * 4 2 1 34 34 H 1.09003 * 109.47155 * 185.91793 * 4 2 1 35 35 H 1.09005 * 109.47125 * 191.87391 * 6 5 4 36 36 H 1.09001 * 109.46690 * 311.86877 * 6 5 4 37 37 H 0.96996 * 119.99915 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.47239 * 173.14868 * 15 5 4 39 39 H 1.09002 * 109.47406 * 53.15041 * 15 5 4 40 40 H 1.08006 * 120.00011 * 0.02562 * 17 16 15 41 41 H 1.07998 * 120.00516 * 179.97438 * 18 17 16 42 42 H 1.09001 * 109.46913 * 59.99913 * 21 20 19 43 43 H 1.09002 * 109.47159 * 299.99989 * 21 20 19 44 44 H 1.08994 * 109.47392 * 180.02562 * 21 20 19 45 45 H 1.07995 * 119.99999 * 179.72488 * 24 19 18 46 46 H 1.08002 * 119.99764 * 180.25065 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6704 -2.1413 1.1800 6 6 1.4292 -2.6886 2.5217 7 6 0.1354 -2.1377 3.0638 8 1 -0.4894 -1.5150 2.4408 9 6 -0.2504 -2.4288 4.3551 10 7 0.5103 -3.1875 5.1135 11 14 -1.8537 -1.7454 5.0273 12 1 -2.9553 -2.7010 4.7470 13 1 -1.7313 -1.5477 6.4939 14 1 -2.1493 -0.4443 4.3752 15 6 2.6960 -2.9182 0.4711 16 6 2.7291 -2.5030 -0.9772 17 6 3.6680 -1.5866 -1.4123 18 6 3.6987 -1.2062 -2.7409 19 6 2.7900 -1.7419 -3.6344 20 16 2.8286 -1.2565 -5.3277 21 6 3.9551 -2.4419 -6.1128 22 8 3.4061 0.0417 -5.3070 23 8 1.4970 -1.4588 -5.7807 24 6 1.8474 -2.6541 -3.1981 25 6 1.8201 -3.0383 -1.8706 26 1 -0.3634 0.5871 0.8434 27 1 -0.3633 0.4368 -0.9302 28 1 -0.3633 -1.0240 0.0868 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.5927 -0.2723 2.1361 34 1 3.1248 -0.6304 1.3039 35 1 1.3659 -3.7753 2.4649 36 1 2.2493 -2.4065 3.1820 37 1 0.2386 -3.3925 6.0218 38 1 2.4593 -3.9800 0.5394 39 1 3.6699 -2.7332 0.9244 40 1 4.3782 -1.1684 -0.7144 41 1 4.4320 -0.4899 -3.0808 42 1 3.5645 -3.4518 -5.9878 43 1 4.9381 -2.3722 -5.6471 44 1 4.0399 -2.2137 -7.1753 45 1 1.1346 -3.0692 -3.8952 46 1 1.0862 -3.7541 -1.5306 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768153326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:37 Heat of formation + Delta-G solvation = -45.324358 kcal Electronic energy + Delta-G solvation = -26388.077142 eV Core-core repulsion = 22791.032778 eV Total energy + Delta-G solvation = -3597.044364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.74514 -37.24248 -37.14130 -36.07425 -34.09961 -32.84456 -31.44189 -31.01771 -29.80180 -27.36345 -26.57156 -26.26282 -24.11013 -22.79727 -21.76388 -20.53171 -19.41975 -19.15791 -17.88023 -16.46677 -16.36796 -16.20101 -15.47248 -15.26292 -14.91831 -14.46245 -14.42283 -14.24523 -13.67688 -13.54561 -13.50283 -13.43303 -13.36866 -12.82820 -12.53183 -12.32031 -12.22451 -12.11918 -11.95199 -11.69584 -11.60415 -11.37177 -11.30148 -11.16014 -10.99251 -10.84067 -10.70787 -10.55316 -10.34127 -10.19468 -9.93147 -9.81027 -9.32187 -8.97796 -8.77078 -8.46385 -7.35169 -6.05986 -4.07026 -0.11381 0.85625 1.36555 2.72340 3.30265 3.36651 3.39654 3.42604 3.82806 3.92879 4.40367 4.45890 4.59078 4.78029 4.88140 4.91019 5.01349 5.29463 5.30000 5.35257 5.39728 5.46730 5.54523 5.70130 5.71737 5.80346 5.97568 6.02404 6.04145 6.09826 6.17192 6.21914 6.30788 6.39144 6.49355 6.54266 6.64366 6.69433 6.88595 6.97022 7.06457 7.19947 7.28545 7.79843 8.02610 8.11895 8.47545 9.02474 9.57718 11.04500 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.003140 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.733482 B = 8914.992143 C = 9151.948274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 C -0.145 4.145 4 C 0.067 3.933 5 N -0.525 5.525 6 C 0.194 3.806 7 C -0.503 4.503 8 H 0.067 0.933 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.273 1.273 15 C 0.078 3.922 16 C 0.003 3.997 17 C -0.134 4.134 18 C -0.028 4.028 19 C -0.669 4.669 20 S 2.502 3.498 21 C -0.652 4.652 22 O -0.941 6.941 23 O -0.940 6.940 24 C -0.025 4.025 25 C -0.120 4.120 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.020 0.980 35 H 0.026 0.974 36 H -0.004 1.004 37 H 0.261 0.739 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.137 0.863 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.260 0.876 -19.480 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 C -0.203 4.203 4 C -0.062 4.062 5 N -0.249 5.249 6 C 0.069 3.931 7 C -0.542 4.542 8 H 0.085 0.915 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.198 1.198 15 C -0.050 4.050 16 C 0.002 3.998 17 C -0.153 4.153 18 C -0.047 4.047 19 C -0.757 4.757 20 S 2.682 3.318 21 C -0.801 4.801 22 O -0.939 6.939 23 O -0.938 6.938 24 C -0.044 4.044 25 C -0.139 4.139 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.038 0.962 35 H 0.044 0.956 36 H 0.014 0.986 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.155 0.845 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.384 1.430 -19.902 21.643 hybrid contribution 0.308 -0.278 1.572 1.626 sum 8.693 1.152 -18.330 20.320 Atomic orbital electron populations 1.21674 0.95011 1.02974 0.99420 1.21412 0.96784 0.94671 0.99272 1.21812 1.00121 0.97125 1.01213 1.22114 0.96338 0.89289 0.98410 1.62103 1.39501 1.01337 1.22000 1.19786 0.96452 0.95174 0.81691 1.21172 1.05019 1.30855 0.97119 0.91478 1.24979 0.97278 0.95433 0.96907 1.69953 1.37687 1.37673 1.08675 0.86530 0.83706 0.79496 0.77895 1.20658 1.21402 1.19794 1.21272 0.95137 0.99307 0.89242 1.20355 0.91702 0.91612 0.96142 1.21164 0.99971 0.98475 0.95725 1.20785 0.95473 0.95331 0.93139 1.30243 1.08187 1.13601 1.23709 1.04993 0.75767 0.75925 0.75065 1.30245 1.17664 1.18508 1.13725 1.93576 1.79711 1.34297 1.86276 1.93582 1.32956 1.86491 1.80726 1.20885 0.94240 0.92477 0.96759 1.21188 0.98919 1.01293 0.92530 0.93487 0.94760 0.90933 0.90579 0.93546 0.93241 0.92961 0.90040 0.96170 0.95614 0.98624 0.92960 0.89911 0.94560 0.85510 0.84632 0.85030 0.85090 0.85344 0.84491 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.14 37.16 0.34 -2.02 16 2 C -0.10 -1.70 2.62 -90.62 -0.24 -1.94 16 3 C -0.14 -2.12 9.19 37.16 0.34 -1.77 16 4 C 0.07 1.24 3.93 -3.82 -0.02 1.23 16 5 N -0.53 -10.39 3.79 -237.51 -0.90 -11.29 16 6 C 0.19 4.74 4.67 -4.98 -0.02 4.71 16 7 C -0.50 -13.51 8.32 -34.44 -0.29 -13.80 16 8 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 11 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.08 1.28 5.02 -4.98 -0.02 1.25 16 16 C 0.00 0.04 3.46 -104.62 -0.36 -0.32 16 17 C -0.13 -1.67 7.31 -39.59 -0.29 -1.96 16 18 C -0.03 -0.32 9.38 -39.59 -0.37 -0.69 16 19 C -0.67 -7.31 5.66 -39.58 -0.22 -7.54 16 20 S 2.50 22.95 5.80 -107.50 -0.62 22.33 16 21 C -0.65 -3.02 10.80 101.05 1.09 -1.93 16 22 O -0.94 -11.56 17.13 -57.54 -0.99 -12.55 16 23 O -0.94 -11.73 17.12 -57.54 -0.98 -12.71 16 24 C -0.02 -0.29 9.47 -39.58 -0.37 -0.66 16 25 C -0.12 -1.58 9.68 -39.58 -0.38 -1.97 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.42 7.66 -51.93 -0.40 1.02 16 29 H 0.08 1.23 3.85 -51.93 -0.20 1.03 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.74 7.04 -51.93 -0.37 1.37 16 34 H 0.02 0.35 7.64 -51.93 -0.40 -0.05 16 35 H 0.03 0.67 7.80 -51.93 -0.41 0.26 16 36 H 0.00 -0.11 8.05 -51.93 -0.42 -0.53 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.08 1.32 7.83 -51.93 -0.41 0.92 16 39 H 0.04 0.57 7.76 -51.93 -0.40 0.17 16 40 H 0.13 1.46 8.05 -52.48 -0.42 1.04 16 41 H 0.14 1.27 7.57 -52.49 -0.40 0.87 16 42 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 44 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.14 1.35 7.56 -52.49 -0.40 0.95 16 46 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -33.69 382.22 -10.50 -44.18 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.56 Total: -0.76 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -0.92 Total: -25.99 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.16 Total: -36.63 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -1.97 Total: -25.26 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 22.95 SS G_CDS: -0.62 Total: 22.33 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.69 -10.50 -44.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.141 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds