Wall clock time and date at job start Tue Mar 31 2020 15:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47268 * 2 1 4 4 C 1.53004 * 109.46990 * 119.99937 * 2 1 3 5 5 N 1.46899 * 109.47213 * 65.92117 * 4 2 1 6 6 C 1.46899 * 111.00047 * 211.90925 * 5 4 2 7 7 C 1.50702 * 109.47446 * 71.87371 * 6 5 4 8 8 H 1.07994 * 119.99597 * 5.04173 * 7 6 5 9 9 C 1.37871 * 119.99824 * 185.04303 * 7 6 5 10 10 N 1.31514 * 120.00305 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99987 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47298 * 89.99766 * 11 9 7 13 13 H 1.48496 * 109.47290 * 209.99832 * 11 9 7 14 14 H 1.48504 * 109.47023 * 330.00130 * 11 9 7 15 15 C 1.46895 * 111.00015 * 87.95058 * 5 4 2 16 16 C 1.50705 * 109.47569 * 293.14578 * 15 5 4 17 17 C 1.38228 * 120.00238 * 97.65806 * 16 15 5 18 18 C 1.38229 * 120.00485 * 179.97438 * 17 16 15 19 19 C 1.38237 * 119.99903 * 0.02692 * 18 17 16 20 20 S 1.76198 * 120.00207 * 179.97438 * 19 18 17 21 21 C 1.81395 * 104.45196 * 89.99610 * 20 19 18 22 22 O 1.42099 * 104.27325 * 333.92541 * 20 19 18 23 23 O 1.42101 * 104.27709 * 206.06960 * 20 19 18 24 24 C 1.38237 * 119.99750 * 0.24605 * 19 18 17 25 25 C 1.38233 * 119.99812 * 359.50338 * 24 19 18 26 26 H 1.09000 * 109.47376 * 304.84431 * 1 2 3 27 27 H 1.09003 * 109.47094 * 64.84538 * 1 2 3 28 28 H 1.08999 * 109.46960 * 184.84271 * 1 2 3 29 29 H 1.09001 * 109.47125 * 239.99573 * 2 1 3 30 30 H 1.09002 * 109.47377 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47124 * 299.99784 * 3 2 1 32 32 H 1.09001 * 109.47396 * 59.99739 * 3 2 1 33 33 H 1.09001 * 109.47212 * 305.91941 * 4 2 1 34 34 H 1.09003 * 109.47155 * 185.91793 * 4 2 1 35 35 H 1.09005 * 109.47125 * 191.87391 * 6 5 4 36 36 H 1.09001 * 109.46690 * 311.86877 * 6 5 4 37 37 H 0.96996 * 119.99915 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.47239 * 173.14868 * 15 5 4 39 39 H 1.09002 * 109.47406 * 53.15041 * 15 5 4 40 40 H 1.08006 * 120.00011 * 0.02562 * 17 16 15 41 41 H 1.07998 * 120.00516 * 179.97438 * 18 17 16 42 42 H 1.09001 * 109.46913 * 59.99913 * 21 20 19 43 43 H 1.09002 * 109.47159 * 299.99989 * 21 20 19 44 44 H 1.08994 * 109.47392 * 180.02562 * 21 20 19 45 45 H 1.07995 * 119.99999 * 179.72488 * 24 19 18 46 46 H 1.08002 * 119.99764 * 180.25065 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6704 -2.1413 1.1800 6 6 1.4292 -2.6886 2.5217 7 6 0.1354 -2.1377 3.0638 8 1 -0.4894 -1.5150 2.4408 9 6 -0.2504 -2.4288 4.3551 10 7 0.5103 -3.1875 5.1135 11 14 -1.8537 -1.7454 5.0273 12 1 -2.9553 -2.7010 4.7470 13 1 -1.7313 -1.5477 6.4939 14 1 -2.1493 -0.4443 4.3752 15 6 2.6960 -2.9182 0.4711 16 6 2.7291 -2.5030 -0.9772 17 6 3.6680 -1.5866 -1.4123 18 6 3.6987 -1.2062 -2.7409 19 6 2.7900 -1.7419 -3.6344 20 16 2.8286 -1.2565 -5.3277 21 6 3.9551 -2.4419 -6.1128 22 8 3.4061 0.0417 -5.3070 23 8 1.4970 -1.4588 -5.7807 24 6 1.8474 -2.6541 -3.1981 25 6 1.8201 -3.0383 -1.8706 26 1 -0.3634 0.5871 0.8434 27 1 -0.3633 0.4368 -0.9302 28 1 -0.3633 -1.0240 0.0868 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.5927 -0.2723 2.1361 34 1 3.1248 -0.6304 1.3039 35 1 1.3659 -3.7753 2.4649 36 1 2.2493 -2.4065 3.1820 37 1 0.2386 -3.3925 6.0218 38 1 2.4593 -3.9800 0.5394 39 1 3.6699 -2.7332 0.9244 40 1 4.3782 -1.1684 -0.7144 41 1 4.4320 -0.4899 -3.0808 42 1 3.5645 -3.4518 -5.9878 43 1 4.9381 -2.3722 -5.6471 44 1 4.0399 -2.2137 -7.1753 45 1 1.1346 -3.0692 -3.8952 46 1 1.0862 -3.7541 -1.5306 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768153326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:36 Heat of formation + Delta-G solvation = -67.636943 kcal Electronic energy + Delta-G solvation = -26389.044688 eV Core-core repulsion = 22791.032778 eV Total energy + Delta-G solvation = -3598.011910 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83917 -38.54071 -38.05962 -36.89597 -35.61496 -34.67098 -32.77210 -31.95959 -30.23390 -29.16893 -27.89455 -27.64081 -25.77041 -23.75680 -23.19980 -21.96025 -20.84408 -19.94181 -18.72286 -18.44935 -17.17745 -17.07179 -16.88367 -16.44622 -16.30714 -15.98254 -15.59330 -15.39708 -14.94506 -14.88694 -14.43101 -14.26030 -14.05295 -13.88292 -13.83661 -13.76881 -13.35859 -13.29286 -13.06283 -13.00130 -12.96041 -12.88171 -12.72152 -12.53889 -12.42098 -12.08476 -12.05252 -11.87955 -11.72092 -11.50765 -11.47467 -11.40563 -11.21225 -10.60068 -9.96777 -9.82521 -9.01100 -8.19108 -6.27417 -0.77541 -0.10232 0.41549 1.39725 1.40057 1.51133 2.00093 2.38154 2.49831 3.11717 3.13515 3.27109 3.37055 3.78474 3.84277 4.03528 4.05546 4.14874 4.17153 4.23680 4.36756 4.41292 4.45546 4.62197 4.63294 4.68061 4.83048 4.84810 4.90877 4.94611 5.02068 5.05895 5.09049 5.12903 5.16668 5.20180 5.21468 5.28186 5.35522 5.55125 5.61842 5.64526 5.71984 5.92918 6.09083 6.35385 6.62500 6.89654 7.41880 8.91078 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.003140 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.733482 B = 8914.992143 C = 9151.948274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.097 4.097 3 C -0.142 4.142 4 C 0.073 3.927 5 N -0.529 5.529 6 C 0.210 3.790 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.960 3.040 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.268 1.268 15 C 0.080 3.920 16 C -0.014 4.014 17 C -0.137 4.137 18 C -0.029 4.029 19 C -0.665 4.665 20 S 2.509 3.491 21 C -0.624 4.624 22 O -0.976 6.976 23 O -0.979 6.979 24 C -0.029 4.029 25 C -0.131 4.131 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.032 0.968 35 H 0.005 0.995 36 H -0.033 1.033 37 H 0.263 0.737 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.135 0.865 41 H 0.158 0.842 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.148 1.503 -22.090 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 C -0.199 4.199 4 C -0.055 4.055 5 N -0.252 5.252 6 C 0.084 3.916 7 C -0.550 4.550 8 H 0.081 0.919 9 C -0.194 4.194 10 N -0.575 5.575 11 Si 0.785 3.215 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.192 1.192 15 C -0.047 4.047 16 C -0.015 4.015 17 C -0.156 4.156 18 C -0.048 4.048 19 C -0.751 4.751 20 S 2.692 3.308 21 C -0.778 4.778 22 O -0.973 6.973 23 O -0.976 6.976 24 C -0.047 4.047 25 C -0.150 4.150 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.023 0.977 36 H -0.016 1.016 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.153 0.847 41 H 0.176 0.824 42 H 0.170 0.830 43 H 0.172 0.828 44 H 0.171 0.829 45 H 0.171 0.829 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.246 2.089 -22.492 24.408 hybrid contribution 0.126 -0.530 2.235 2.300 sum 9.373 1.559 -20.257 22.374 Atomic orbital electron populations 1.21620 0.95950 1.01330 0.99811 1.21383 0.95914 0.95987 0.98257 1.21782 1.01146 0.95361 1.01647 1.22052 0.96791 0.88434 0.98225 1.62006 1.41735 1.02291 1.19217 1.19411 0.94696 0.93813 0.83718 1.21448 1.05744 1.30467 0.97360 0.91885 1.25798 1.00563 0.95732 0.97299 1.70068 1.39474 1.38973 1.09030 0.85522 0.79722 0.78999 0.77244 1.19980 1.20916 1.19198 1.21251 0.94099 0.98634 0.90757 1.20089 0.93459 0.93466 0.94482 1.21276 0.99651 0.98000 0.96665 1.21062 0.95868 0.95342 0.92479 1.30606 1.07177 1.12232 1.25133 1.04761 0.75702 0.76189 0.74105 1.30029 1.16483 1.16897 1.14386 1.93532 1.80024 1.37387 1.86364 1.93536 1.36220 1.87182 1.80695 1.21071 0.94747 0.92676 0.96231 1.21238 0.98861 1.01576 0.93368 0.94524 0.93075 0.93335 0.89706 0.91973 0.92009 0.93329 0.93319 0.95001 0.97724 1.01561 0.92840 0.90425 0.94163 0.84666 0.82437 0.82969 0.82785 0.82886 0.82943 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.14 71.98 0.66 -3.93 16 2 C -0.10 -3.15 2.62 -10.79 -0.03 -3.18 16 3 C -0.14 -3.89 9.19 71.98 0.66 -3.23 16 4 C 0.07 2.78 3.93 86.30 0.34 3.11 16 5 N -0.53 -21.71 3.79 -905.34 -3.43 -25.14 16 6 C 0.21 10.80 4.67 85.56 0.40 11.20 16 7 C -0.51 -28.49 8.32 25.60 0.21 -28.28 16 8 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.00 0.22 5.46 84.65 0.46 0.68 16 10 N -0.93 -55.69 13.29 21.44 0.28 -55.41 16 11 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 C 0.08 2.68 5.02 85.56 0.43 3.11 16 16 C -0.01 -0.39 3.46 -19.87 -0.07 -0.46 16 17 C -0.14 -3.19 7.31 22.27 0.16 -3.03 16 18 C -0.03 -0.58 9.38 22.27 0.21 -0.37 16 19 C -0.67 -13.00 5.66 22.27 0.13 -12.88 16 20 S 2.51 39.44 5.80 -56.49 -0.33 39.12 16 21 C -0.62 -2.72 10.80 113.37 1.22 -1.50 16 22 O -0.98 -21.77 17.13 -127.65 -2.19 -23.96 16 23 O -0.98 -22.76 17.12 -127.65 -2.19 -24.94 16 24 C -0.03 -0.62 9.47 22.27 0.21 -0.41 16 25 C -0.13 -3.41 9.68 22.27 0.22 -3.20 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.93 7.66 -2.39 -0.02 1.91 16 29 H 0.08 2.66 3.85 -2.39 -0.01 2.65 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 2.16 7.04 -2.39 -0.02 2.14 16 34 H 0.03 1.12 7.64 -2.39 -0.02 1.10 16 35 H 0.00 0.26 7.80 -2.38 -0.02 0.24 16 36 H -0.03 -1.88 8.05 -2.39 -0.02 -1.90 16 37 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.08 2.62 7.83 -2.39 -0.02 2.60 16 39 H 0.04 1.30 7.76 -2.39 -0.02 1.28 16 40 H 0.14 2.87 8.05 -2.91 -0.02 2.85 16 41 H 0.16 2.44 7.57 -2.91 -0.02 2.41 16 42 H 0.15 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.15 2.77 7.56 -2.91 -0.02 2.75 16 46 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -75.11 382.22 0.34 -74.77 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.94 Total: 11.35 kcal Atomic # 6 Polarization: -47.58 SS G_CDS: 5.21 Total: -42.37 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -3.15 Total: -80.55 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -4.37 Total: -48.90 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 39.44 SS G_CDS: -0.33 Total: 39.12 kcal Total: -75.11 0.34 -74.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.132 kcal (2) G-P(sol) polarization free energy of solvation -75.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds