Wall clock time and date at job start Tue Mar 31 2020 15:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47198 * 1 3 3 C 1.17405 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47100 * 359.60930 * 4 3 2 6 6 O 1.45206 * 109.46851 * 179.97438 * 5 4 3 7 7 C 1.34845 * 116.99527 * 180.02562 * 6 5 4 8 8 O 1.21596 * 120.00244 * 0.02562 * 7 6 5 9 9 C 1.46738 * 119.99463 * 180.02562 * 7 6 5 10 10 C 1.36476 * 126.78419 * 359.97438 * 9 7 6 11 11 N 1.35403 * 109.76347 * 180.02562 * 10 9 7 12 12 C 1.46493 * 124.77238 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47400 * 265.02426 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.37979 * 110.44843 * 0.26347 * 11 10 9 23 23 C 1.39123 * 133.17355 * 180.45168 * 22 11 10 24 24 C 1.37770 * 119.92937 * 179.57627 * 23 22 11 25 25 C 1.38755 * 120.63332 * 359.71846 * 24 23 22 26 26 C 1.37768 * 120.29398 * 0.02562 * 25 24 23 27 27 C 1.39254 * 119.67140 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.47299 * 0.39190 * 1 2 3 29 29 H 1.09002 * 109.46633 * 120.38708 * 1 2 3 30 30 H 1.08994 * 109.47014 * 240.38615 * 1 2 3 31 31 H 1.09002 * 109.47375 * 239.61344 * 4 3 2 32 32 H 1.08991 * 109.47386 * 119.61018 * 4 3 2 33 33 H 1.09002 * 109.47082 * 60.00636 * 5 4 3 34 34 H 1.08994 * 109.47558 * 300.00121 * 5 4 3 35 35 H 1.07997 * 125.11636 * 0.02562 * 10 9 7 36 36 H 1.09004 * 109.46794 * 145.02525 * 12 11 10 37 37 H 1.09000 * 109.47559 * 25.03001 * 12 11 10 38 38 H 1.09004 * 109.47066 * 60.00265 * 13 12 11 39 39 H 1.08994 * 109.47405 * 300.00096 * 13 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.03898 * 359.28808 * 23 22 11 42 42 H 1.07996 * 119.69001 * 179.69484 * 24 23 22 43 43 H 1.07993 * 119.85595 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.16372 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6293 -1.4402 0.0098 6 8 6.0814 -1.4389 0.0092 7 6 6.6946 -2.6398 0.0168 8 8 6.0332 -3.6601 0.0233 9 6 8.1600 -2.7152 0.0173 10 6 9.0323 -1.6656 0.0101 11 7 10.3050 -2.1280 0.0126 12 6 11.5011 -1.2823 0.0061 13 6 11.9890 -1.0999 -1.4324 14 6 13.2199 -0.2304 -1.4390 15 1 13.6150 0.1534 -0.5099 16 6 13.8454 0.0700 -2.6305 17 7 13.3646 -0.3976 -3.7617 18 14 15.3756 1.1414 -2.6378 19 1 15.7101 1.5362 -1.2459 20 1 16.5094 0.3811 -3.2224 21 1 15.1240 2.3583 -3.4510 22 6 10.3166 -3.5077 0.0156 23 6 11.3391 -4.4510 0.0269 24 6 11.0347 -5.7946 0.0357 25 6 9.7141 -6.2204 0.0395 26 6 8.6877 -5.3015 0.0338 27 6 8.9811 -3.9402 0.0248 28 1 -0.3633 1.0276 -0.0070 29 1 -0.3633 -0.5199 -0.8865 30 1 -0.3633 -0.5078 0.8934 31 1 4.4809 0.5220 0.8865 32 1 4.4809 0.5099 -0.8934 33 1 4.2665 -1.9604 -0.8767 34 1 4.2665 -1.9483 0.9032 35 1 8.7500 -0.6232 0.0035 36 1 12.2842 -1.7561 0.5981 37 1 11.2605 -0.3092 0.4344 38 1 11.2059 -0.6261 -2.0244 39 1 12.2297 -2.0729 -1.8606 40 1 13.8045 -0.1859 -4.6000 41 1 12.3704 -4.1305 0.0239 42 1 11.8315 -6.5236 0.0395 43 1 9.4898 -7.2768 0.0468 44 1 7.6605 -5.6352 0.0363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769547678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:38 Heat of formation + Delta-G solvation = 2.325807 kcal Electronic energy + Delta-G solvation = -25486.448832 eV Core-core repulsion = 21756.026783 eV Total energy + Delta-G solvation = -3730.422049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30265 -39.84010 -36.95311 -36.50993 -34.99873 -34.11885 -32.49804 -32.04131 -30.49503 -29.01821 -28.82951 -27.77764 -25.42012 -23.97914 -22.74657 -22.44871 -21.74112 -20.43813 -19.80753 -17.69347 -17.02561 -16.60753 -16.54408 -16.43056 -15.97212 -15.27388 -15.06224 -14.93992 -14.62212 -14.20706 -14.10725 -13.80500 -13.74118 -13.72356 -13.63580 -13.15873 -12.94970 -12.54340 -12.45508 -12.31863 -11.99911 -11.84935 -11.47685 -11.24274 -11.11929 -10.77937 -10.69877 -10.62220 -10.37665 -10.25305 -10.05707 -9.96941 -9.95469 -9.45358 -9.29437 -8.57648 -8.01463 -7.45621 -6.21026 -4.27524 1.17805 1.75407 2.14369 2.21883 2.44055 2.82758 3.13551 3.19126 3.27890 3.30487 3.42358 4.01885 4.18237 4.29157 4.76742 4.78569 4.86595 4.94580 5.01797 5.14027 5.15352 5.19943 5.21484 5.26924 5.32705 5.41338 5.44830 5.60909 5.63288 5.66605 5.72298 5.82222 5.92086 5.94400 5.97461 6.27559 6.33054 6.55028 6.65967 6.81564 6.87690 6.97041 7.28432 7.32730 7.35129 7.48389 7.49516 7.75676 8.05955 8.08420 8.78385 9.38636 10.89774 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009828 B = 0.002731 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.192396 B =10250.117297 C =12693.833451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.183 4.183 3 C -0.187 4.187 4 C -0.004 4.004 5 C 0.076 3.924 6 O -0.359 6.359 7 C 0.548 3.452 8 O -0.523 6.523 9 C -0.252 4.252 10 C 0.158 3.842 11 N -0.449 5.449 12 C 0.100 3.900 13 C 0.011 3.989 14 C -0.531 4.531 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.887 5.887 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.091 3.909 23 C -0.108 4.108 24 C -0.111 4.111 25 C -0.141 4.141 26 C -0.078 4.078 27 C -0.058 4.058 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.183 0.817 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.024 0.976 39 H 0.026 0.974 40 H 0.264 0.736 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.528 -2.762 9.042 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.183 4.183 3 C -0.187 4.187 4 C -0.041 4.041 5 C 0.002 3.998 6 O -0.276 6.276 7 C 0.395 3.605 8 O -0.413 6.413 9 C -0.261 4.261 10 C 0.020 3.980 11 N -0.125 5.125 12 C -0.020 4.020 13 C -0.027 4.027 14 C -0.569 4.569 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.525 5.525 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.013 4.013 23 C -0.128 4.128 24 C -0.130 4.130 25 C -0.160 4.160 26 C -0.096 4.096 27 C -0.062 4.062 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.200 0.800 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.398 -2.862 8.860 18.857 hybrid contribution 0.755 0.650 -0.283 1.036 sum -15.643 -2.212 8.576 17.977 Atomic orbital electron populations 1.18877 0.84506 1.03103 1.03181 1.22426 0.93923 1.00189 1.01803 1.21842 0.93084 1.02306 1.01435 1.18426 0.84350 0.96210 1.05066 1.22796 0.77053 0.96771 1.03179 1.86509 1.22250 1.33659 1.85231 1.19941 0.87581 0.80733 0.72231 1.90798 1.66654 1.35810 1.48023 1.18776 0.88289 0.92942 1.26120 1.22321 0.82611 0.99273 0.93749 1.44507 1.06994 1.04945 1.56084 1.22532 0.83165 0.92905 1.03355 1.19473 0.96804 0.98280 0.88121 1.21008 1.10881 1.31742 0.93316 0.92153 1.25013 0.97659 0.95955 0.95497 1.69979 1.40155 1.44421 0.97917 0.86451 0.82645 0.80167 0.78245 1.19598 1.20835 1.20817 1.18254 0.94872 0.83142 1.05077 1.20171 0.97619 0.91587 1.03462 1.20775 0.96547 0.94449 1.01212 1.20897 0.92473 0.99041 1.03548 1.20541 0.99589 0.90501 0.99019 1.18620 0.90672 0.92407 1.04476 0.90097 0.90071 0.90107 0.88341 0.88215 0.90908 0.90973 0.80039 0.89978 0.89581 0.95728 0.95604 0.92661 0.85610 0.85821 0.86153 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.24 10.32 34.37 0.35 0.12 16 2 C -0.18 -1.80 14.13 -37.12 -0.52 -2.33 16 3 C -0.19 -1.97 13.34 -37.12 -0.50 -2.46 16 4 C 0.00 -0.04 6.08 -29.52 -0.18 -0.22 16 5 C 0.08 0.88 5.43 37.16 0.20 1.08 16 6 O -0.36 -4.94 10.05 -40.89 -0.41 -5.35 16 7 C 0.55 8.99 7.93 34.16 0.27 9.26 16 8 O -0.52 -9.55 15.95 -19.34 -0.31 -9.86 16 9 C -0.25 -4.27 6.27 -103.33 -0.65 -4.92 16 10 C 0.16 2.49 11.04 -16.61 -0.18 2.30 16 11 N -0.45 -7.80 2.74 -114.22 -0.31 -8.12 16 12 C 0.10 1.80 5.89 -4.05 -0.02 1.78 16 13 C 0.01 0.25 5.30 -27.88 -0.15 0.11 16 14 C -0.53 -13.69 9.11 -34.44 -0.31 -14.01 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 18 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.09 1.62 6.79 -83.96 -0.57 1.05 16 23 C -0.11 -1.77 9.97 -39.42 -0.39 -2.16 16 24 C -0.11 -1.57 10.01 -39.56 -0.40 -1.96 16 25 C -0.14 -1.98 10.03 -39.56 -0.40 -2.38 16 26 C -0.08 -1.26 9.85 -39.38 -0.39 -1.65 16 27 C -0.06 -1.03 6.27 -104.95 -0.66 -1.69 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.18 2.28 8.06 -52.49 -0.42 1.85 16 36 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.13 2.00 7.45 -52.49 -0.39 1.61 16 LS Contribution 391.37 15.07 5.90 5.90 Total: -1.00 -31.86 391.37 -10.28 -42.14 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.27 Total: 1.13 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -4.59 Total: -16.52 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.42 Total: -32.80 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.72 Total: -15.21 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.86 -10.28 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769547678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.463 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds