Wall clock time and date at job start Tue Mar 31 2020 15:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47198 * 1 3 3 C 1.17405 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47100 * 359.60930 * 4 3 2 6 6 O 1.45206 * 109.46851 * 179.97438 * 5 4 3 7 7 C 1.34845 * 116.99527 * 180.02562 * 6 5 4 8 8 O 1.21596 * 120.00244 * 0.02562 * 7 6 5 9 9 C 1.46738 * 119.99463 * 180.02562 * 7 6 5 10 10 C 1.36476 * 126.78419 * 359.97438 * 9 7 6 11 11 N 1.35403 * 109.76347 * 180.02562 * 10 9 7 12 12 C 1.46493 * 124.77238 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47400 * 265.02426 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.37979 * 110.44843 * 0.26347 * 11 10 9 23 23 C 1.39123 * 133.17355 * 180.45168 * 22 11 10 24 24 C 1.37770 * 119.92937 * 179.57627 * 23 22 11 25 25 C 1.38755 * 120.63332 * 359.71846 * 24 23 22 26 26 C 1.37768 * 120.29398 * 0.02562 * 25 24 23 27 27 C 1.39254 * 119.67140 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.47299 * 0.39190 * 1 2 3 29 29 H 1.09002 * 109.46633 * 120.38708 * 1 2 3 30 30 H 1.08994 * 109.47014 * 240.38615 * 1 2 3 31 31 H 1.09002 * 109.47375 * 239.61344 * 4 3 2 32 32 H 1.08991 * 109.47386 * 119.61018 * 4 3 2 33 33 H 1.09002 * 109.47082 * 60.00636 * 5 4 3 34 34 H 1.08994 * 109.47558 * 300.00121 * 5 4 3 35 35 H 1.07997 * 125.11636 * 0.02562 * 10 9 7 36 36 H 1.09004 * 109.46794 * 145.02525 * 12 11 10 37 37 H 1.09000 * 109.47559 * 25.03001 * 12 11 10 38 38 H 1.09004 * 109.47066 * 60.00265 * 13 12 11 39 39 H 1.08994 * 109.47405 * 300.00096 * 13 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.03898 * 359.28808 * 23 22 11 42 42 H 1.07996 * 119.69001 * 179.69484 * 24 23 22 43 43 H 1.07993 * 119.85595 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.16372 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6293 -1.4402 0.0098 6 8 6.0814 -1.4389 0.0092 7 6 6.6946 -2.6398 0.0168 8 8 6.0332 -3.6601 0.0233 9 6 8.1600 -2.7152 0.0173 10 6 9.0323 -1.6656 0.0101 11 7 10.3050 -2.1280 0.0126 12 6 11.5011 -1.2823 0.0061 13 6 11.9890 -1.0999 -1.4324 14 6 13.2199 -0.2304 -1.4390 15 1 13.6150 0.1534 -0.5099 16 6 13.8454 0.0700 -2.6305 17 7 13.3646 -0.3976 -3.7617 18 14 15.3756 1.1414 -2.6378 19 1 15.7101 1.5362 -1.2459 20 1 16.5094 0.3811 -3.2224 21 1 15.1240 2.3583 -3.4510 22 6 10.3166 -3.5077 0.0156 23 6 11.3391 -4.4510 0.0269 24 6 11.0347 -5.7946 0.0357 25 6 9.7141 -6.2204 0.0395 26 6 8.6877 -5.3015 0.0338 27 6 8.9811 -3.9402 0.0248 28 1 -0.3633 1.0276 -0.0070 29 1 -0.3633 -0.5199 -0.8865 30 1 -0.3633 -0.5078 0.8934 31 1 4.4809 0.5220 0.8865 32 1 4.4809 0.5099 -0.8934 33 1 4.2665 -1.9604 -0.8767 34 1 4.2665 -1.9483 0.9032 35 1 8.7500 -0.6232 0.0035 36 1 12.2842 -1.7561 0.5981 37 1 11.2605 -0.3092 0.4344 38 1 11.2059 -0.6261 -2.0244 39 1 12.2297 -2.0729 -1.8606 40 1 13.8045 -0.1859 -4.6000 41 1 12.3704 -4.1305 0.0239 42 1 11.8315 -6.5236 0.0395 43 1 9.4898 -7.2768 0.0468 44 1 7.6605 -5.6352 0.0363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769547678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:38 Heat of formation + Delta-G solvation = -11.102875 kcal Electronic energy + Delta-G solvation = -25487.031144 eV Core-core repulsion = 21756.026783 eV Total energy + Delta-G solvation = -3731.004360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.57500 -41.05636 -38.20059 -37.66410 -35.88239 -35.77973 -34.11207 -32.83104 -31.93593 -30.32538 -30.16240 -28.53785 -27.05514 -25.12886 -23.98453 -23.80554 -23.09806 -21.80104 -21.06486 -18.94482 -18.65812 -17.98745 -17.63050 -17.41271 -17.07555 -16.66925 -16.53766 -16.25078 -15.89581 -15.39068 -15.25021 -14.96327 -14.65445 -14.48897 -14.42517 -14.37817 -14.27698 -14.10044 -13.68007 -13.50495 -13.27583 -12.97133 -12.91872 -12.82619 -12.60909 -12.35702 -12.06245 -12.02611 -11.69623 -11.67949 -11.52879 -11.38121 -10.81467 -10.67137 -10.65400 -10.60737 -9.26244 -8.75040 -8.24930 -6.38227 -0.06368 0.52118 0.87168 1.30408 1.41486 1.42801 1.54962 1.69989 1.73328 1.97123 2.14845 2.39935 2.94418 3.10203 3.32227 3.62904 3.68591 3.83426 3.91724 3.94563 4.09810 4.18956 4.25824 4.30151 4.43931 4.44693 4.58947 4.65760 4.69056 4.72689 4.77842 4.78619 4.81515 4.87467 4.87901 5.08699 5.08868 5.34402 5.36562 5.38063 5.49136 5.59767 5.65096 5.70326 5.80206 6.02134 6.17859 6.22713 6.62348 6.78616 6.81148 7.32870 8.86796 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009828 B = 0.002731 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.192396 B =10250.117297 C =12693.833451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.185 4.185 3 C -0.224 4.224 4 C 0.005 3.995 5 C 0.075 3.925 6 O -0.352 6.352 7 C 0.550 3.450 8 O -0.548 6.548 9 C -0.270 4.270 10 C 0.164 3.836 11 N -0.457 5.457 12 C 0.116 3.884 13 C 0.020 3.980 14 C -0.539 4.539 15 H 0.075 0.925 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.255 1.255 20 H -0.283 1.283 21 H -0.281 1.281 22 C 0.066 3.934 23 C -0.127 4.127 24 C -0.104 4.104 25 C -0.131 4.131 26 C -0.095 4.095 27 C -0.082 4.082 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.212 0.788 36 H 0.092 0.908 37 H 0.111 0.889 38 H -0.004 1.004 39 H -0.009 1.009 40 H 0.264 0.736 41 H 0.126 0.874 42 H 0.157 0.843 43 H 0.155 0.845 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.479 -2.304 10.291 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.185 4.185 3 C -0.224 4.224 4 C -0.032 4.032 5 C 0.002 3.998 6 O -0.269 6.269 7 C 0.399 3.601 8 O -0.440 6.440 9 C -0.279 4.279 10 C 0.027 3.973 11 N -0.134 5.134 12 C -0.003 4.003 13 C -0.018 4.018 14 C -0.577 4.577 15 H 0.093 0.907 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.792 3.208 19 H -0.179 1.179 20 H -0.209 1.209 21 H -0.207 1.207 22 C -0.037 4.037 23 C -0.147 4.147 24 C -0.123 4.123 25 C -0.149 4.149 26 C -0.113 4.113 27 C -0.086 4.086 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.229 0.771 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.015 0.985 39 H 0.010 0.990 40 H 0.073 0.927 41 H 0.144 0.856 42 H 0.175 0.825 43 H 0.172 0.828 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.363 -2.396 10.133 19.396 hybrid contribution 0.637 0.426 -0.680 1.024 sum -15.726 -1.971 9.454 18.454 Atomic orbital electron populations 1.19141 0.82103 1.04538 1.04379 1.23410 0.95237 0.98976 1.00891 1.22211 0.93810 1.03707 1.02654 1.18373 0.84061 0.94629 1.06100 1.22959 0.75620 0.98456 1.02811 1.86492 1.23561 1.32202 1.84657 1.19917 0.87485 0.81029 0.71681 1.90774 1.67123 1.36740 1.49368 1.18960 0.88769 0.93297 1.26876 1.22782 0.81796 1.00417 0.92290 1.44446 1.07166 1.04897 1.56924 1.22218 0.83926 0.94516 0.99652 1.19267 0.95629 0.95729 0.91193 1.21496 1.11242 1.31214 0.93780 0.90654 1.25975 1.01007 0.97445 0.95222 1.70125 1.42007 1.46350 0.98652 0.85352 0.78445 0.78053 0.78911 1.17859 1.20892 1.20711 1.18578 0.95449 0.83571 1.06120 1.20423 0.97437 0.92525 1.04292 1.21188 0.97613 0.94177 0.99288 1.21296 0.91852 1.00411 1.01370 1.20723 1.00244 0.90461 0.99905 1.18958 0.90986 0.93394 1.05221 0.88443 0.88878 0.88727 0.87000 0.87483 0.91604 0.91083 0.77110 0.88968 0.87064 0.98538 0.99045 0.92747 0.85599 0.82537 0.82755 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.46 10.32 70.18 0.72 0.27 16 2 C -0.19 -3.47 14.13 31.12 0.44 -3.03 16 3 C -0.22 -4.63 13.34 31.12 0.42 -4.21 16 4 C 0.00 0.08 6.08 28.79 0.18 0.26 16 5 C 0.08 1.75 5.43 71.98 0.39 2.14 16 6 O -0.35 -9.66 10.05 -57.58 -0.58 -10.24 16 7 C 0.55 18.33 7.93 70.04 0.56 18.89 16 8 O -0.55 -20.48 15.95 19.52 0.31 -20.17 16 9 C -0.27 -9.27 6.27 -19.03 -0.12 -9.39 16 10 C 0.16 5.11 11.04 83.73 0.92 6.04 16 11 N -0.46 -15.88 2.74 -515.27 -1.41 -17.29 16 12 C 0.12 4.14 5.89 86.38 0.51 4.65 16 13 C 0.02 0.94 5.30 29.85 0.16 1.10 16 14 C -0.54 -27.66 9.11 25.60 0.23 -27.42 16 15 H 0.08 3.56 7.74 -2.91 -0.02 3.54 16 16 C 0.00 0.11 5.46 84.66 0.46 0.58 16 17 N -0.93 -54.57 13.29 21.45 0.28 -54.28 16 18 Si 0.97 41.54 29.54 68.60 2.03 43.57 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 22 C 0.07 2.38 6.79 38.91 0.26 2.65 16 23 C -0.13 -4.10 9.97 22.37 0.22 -3.88 16 24 C -0.10 -2.77 10.01 22.28 0.22 -2.55 16 25 C -0.13 -3.46 10.03 22.28 0.22 -3.24 16 26 C -0.09 -3.05 9.85 22.40 0.22 -2.83 16 27 C -0.08 -2.95 6.27 -20.08 -0.13 -3.08 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.21 5.02 8.06 -2.91 -0.02 5.00 16 36 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 37 H 0.11 3.39 8.11 -2.39 -0.02 3.37 16 38 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 41 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 42 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 44 H 0.13 3.99 7.45 -2.91 -0.02 3.97 16 Total: -1.00 -70.45 391.37 7.53 -62.92 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.00 Total: 18.57 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 5.90 Total: -23.07 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -1.13 Total: -71.58 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.27 Total: -30.41 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -70.45 7.53 -62.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769547678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.817 kcal (2) G-P(sol) polarization free energy of solvation -70.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds