Wall clock time and date at job start Tue Mar 31 2020 15:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46860 * 235.03512 * 3 2 1 5 5 C 1.53002 * 109.46965 * 180.02562 * 4 3 2 6 6 O 1.45206 * 109.47129 * 180.02562 * 5 4 3 7 7 C 1.34841 * 116.99711 * 180.02562 * 6 5 4 8 8 O 1.21593 * 120.00202 * 0.02562 * 7 6 5 9 9 C 1.46742 * 119.99685 * 180.02562 * 7 6 5 10 10 C 1.36470 * 126.77937 * 0.02562 * 9 7 6 11 11 N 1.35403 * 109.76001 * 179.97438 * 10 9 7 12 12 C 1.46499 * 124.77568 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47188 * 265.03107 * 12 11 10 14 14 C 1.50701 * 109.47134 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99916 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00283 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00057 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46800 * 90.00052 * 18 16 14 20 20 H 1.48497 * 109.47278 * 210.00021 * 18 16 14 21 21 H 1.48497 * 109.46893 * 330.00025 * 18 16 14 22 22 C 1.37977 * 110.45146 * 0.02562 * 11 10 9 23 23 C 1.39121 * 133.17920 * 180.02562 * 22 11 10 24 24 C 1.37764 * 119.93357 * 179.97438 * 23 22 11 25 25 C 1.38746 * 120.63018 * 359.97438 * 24 23 22 26 26 C 1.37766 * 120.29994 * 0.02562 * 25 24 23 27 27 C 1.39267 * 119.66871 * 359.73215 * 26 25 24 28 28 H 4.44647 * 5.63421 * 179.97438 * 4 1 2 29 29 H 1.09004 * 109.46939 * 115.03964 * 3 2 1 30 30 H 1.08992 * 109.47557 * 355.04118 * 3 2 1 31 31 H 1.09004 * 109.46976 * 60.00474 * 4 3 2 32 32 H 1.09004 * 109.47878 * 300.00343 * 4 3 2 33 33 H 1.09004 * 109.46930 * 60.00393 * 5 4 3 34 34 H 1.09000 * 109.47312 * 300.00337 * 5 4 3 35 35 H 1.07995 * 125.12107 * 359.95090 * 10 9 7 36 36 H 1.09007 * 109.47169 * 25.02647 * 12 11 10 37 37 H 1.08994 * 109.47483 * 145.02724 * 12 11 10 38 38 H 1.08998 * 109.46923 * 299.99777 * 13 12 11 39 39 H 1.08999 * 109.47210 * 59.99961 * 13 12 11 40 40 H 0.96998 * 120.00201 * 180.02562 * 17 16 14 41 41 H 1.08007 * 120.03352 * 0.02562 * 23 22 11 42 42 H 1.07997 * 119.68580 * 179.97438 * 24 23 22 43 43 H 1.08003 * 119.85254 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.16382 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.8275 1.1821 5 6 4.6856 0.8288 1.1818 6 8 5.1693 1.6130 2.3040 7 6 6.5060 1.7157 2.4482 8 8 7.2469 1.1649 1.6569 9 6 7.0665 2.4921 3.5601 10 6 6.3684 3.1619 4.5227 11 7 7.2292 3.7604 5.3795 12 6 6.8316 4.5666 6.5363 13 6 6.8120 6.0456 6.1447 14 6 6.4024 6.8748 7.3345 15 1 6.1780 6.3950 8.2757 16 6 6.3141 8.2461 7.2215 17 7 6.5868 8.8304 6.0753 18 14 5.8056 9.2740 8.6961 19 1 7.0130 9.6642 9.4675 20 1 5.1006 10.4947 8.2292 21 1 4.8989 8.4802 9.5638 22 6 8.5337 3.5051 5.0093 23 6 9.7643 3.8772 5.5407 24 6 10.9292 3.4581 4.9363 25 6 10.8895 2.6649 3.7986 26 6 9.6806 2.2860 3.2573 27 6 8.4954 2.6984 3.8611 28 1 -1.0502 0.0000 -0.0003 29 1 3.0092 0.4358 -0.9311 30 1 3.0099 -1.0229 0.0888 31 1 2.7925 0.3924 2.1133 32 1 2.7918 1.8512 1.0933 33 1 5.0484 1.2642 0.2506 34 1 5.0498 -0.1948 1.2704 35 1 5.2916 3.2079 4.5906 36 1 5.8371 4.2647 6.8650 37 1 7.5439 4.4148 7.3472 38 1 7.8064 6.3475 5.8160 39 1 6.0996 6.1974 5.3339 40 1 6.5251 9.7952 5.9959 41 1 9.8065 4.4934 6.4268 42 1 11.8823 3.7496 5.3521 43 1 11.8105 2.3438 3.3347 44 1 9.6523 1.6683 2.3718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769548096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:41 Heat of formation + Delta-G solvation = 6.111548 kcal Electronic energy + Delta-G solvation = -25639.231383 eV Core-core repulsion = 21908.973496 eV Total energy + Delta-G solvation = -3730.257887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29872 -39.83046 -36.95271 -36.65962 -35.35961 -34.11633 -32.48111 -32.01330 -30.49445 -29.01938 -28.82490 -27.09799 -25.26457 -23.24964 -22.60279 -21.99771 -21.71711 -20.42643 -19.77632 -18.42640 -17.48110 -16.97826 -16.64545 -16.46668 -16.00776 -15.28152 -15.19583 -15.11323 -14.80059 -14.35286 -14.25170 -13.71095 -13.64503 -13.36445 -13.19476 -12.97942 -12.78680 -12.51832 -12.40030 -11.85689 -11.71229 -11.61519 -11.44905 -11.24794 -11.10201 -10.78071 -10.71194 -10.60475 -10.52574 -10.39347 -10.33986 -10.15788 -9.95948 -9.46708 -9.29452 -8.57017 -8.01315 -7.45342 -6.20627 -4.27305 1.18147 1.75591 2.14739 2.39693 2.55121 2.81996 3.13908 3.20101 3.27713 3.29805 3.43018 4.05306 4.18334 4.29322 4.63943 4.77326 4.82393 4.87089 4.94858 5.05956 5.15535 5.15959 5.22200 5.27001 5.30650 5.44093 5.55669 5.70224 5.72520 5.75756 5.79994 5.84834 5.92611 5.96237 5.97680 6.27983 6.33231 6.57428 6.66099 6.81702 6.87916 6.97339 7.28560 7.32292 7.32952 7.48559 7.49689 7.75853 8.07337 8.08933 8.78368 9.38857 10.90159 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008469 B = 0.002997 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.533489 B = 9341.661793 C =12257.048378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C -0.009 4.009 4 C -0.116 4.116 5 C 0.070 3.930 6 O -0.359 6.359 7 C 0.547 3.453 8 O -0.524 6.524 9 C -0.253 4.253 10 C 0.157 3.843 11 N -0.449 5.449 12 C 0.100 3.900 13 C 0.011 3.989 14 C -0.532 4.532 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.090 3.910 23 C -0.108 4.108 24 C -0.111 4.111 25 C -0.141 4.141 26 C -0.078 4.078 27 C -0.058 4.058 28 H 0.217 0.783 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.182 0.818 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.026 0.974 39 H 0.024 0.976 40 H 0.264 0.736 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.776 -16.352 -7.701 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.187 4.187 3 C -0.046 4.046 4 C -0.154 4.154 5 C -0.004 4.004 6 O -0.276 6.276 7 C 0.394 3.606 8 O -0.414 6.414 9 C -0.262 4.262 10 C 0.020 3.980 11 N -0.125 5.125 12 C -0.020 4.020 13 C -0.026 4.026 14 C -0.570 4.570 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.525 5.525 18 Si 0.725 3.275 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.014 4.014 23 C -0.128 4.128 24 C -0.130 4.130 25 C -0.160 4.160 26 C -0.096 4.096 27 C -0.062 4.062 28 H 0.234 0.766 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.199 0.801 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.639 -16.143 -7.734 18.093 hybrid contribution -0.579 0.748 0.621 1.132 sum -3.217 -15.394 -7.113 17.260 Atomic orbital electron populations 1.24936 0.96001 1.00850 1.00570 1.22960 0.94395 1.00595 1.00708 1.18568 0.85043 1.01608 0.99366 1.21494 0.92975 1.01965 0.98936 1.22921 0.93879 0.95489 0.88107 1.86547 1.24542 1.67532 1.49009 1.19950 0.79671 0.77588 0.83359 1.90789 1.60199 1.46296 1.44161 1.18794 0.92096 1.14072 1.01195 1.22317 0.96495 0.90856 0.88317 1.44505 1.03974 1.39962 1.24106 1.22533 1.00927 0.94021 0.84481 1.19467 0.98645 0.86630 0.97884 1.20967 1.47799 0.91634 0.96609 0.92217 1.25004 0.94945 0.98033 0.96068 1.69966 1.47897 1.10393 1.24251 0.86510 0.78790 0.79801 0.82439 1.20461 1.21040 1.19713 1.18257 0.85555 1.00714 0.96853 1.20170 0.89243 1.02018 1.01405 1.20770 0.97119 0.98763 0.96341 1.20895 0.97226 1.00555 0.97295 1.20541 0.90251 0.99406 0.99439 1.18624 0.91472 1.00297 0.95789 0.76598 0.89097 0.89155 0.90249 0.90125 0.91057 0.91143 0.80104 0.89611 0.89980 0.95611 0.95738 0.92600 0.85623 0.85826 0.86154 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.68 19.25 29.55 0.57 -1.11 16 2 C -0.19 -1.67 13.34 -37.12 -0.50 -2.17 16 3 C -0.01 -0.07 5.70 -29.52 -0.17 -0.23 16 4 C -0.12 -0.98 5.55 -26.73 -0.15 -1.13 16 5 C 0.07 0.73 5.48 37.16 0.20 0.93 16 6 O -0.36 -4.92 10.05 -40.88 -0.41 -5.33 16 7 C 0.55 8.88 7.93 34.17 0.27 9.15 16 8 O -0.52 -9.34 15.95 -19.34 -0.31 -9.65 16 9 C -0.25 -4.28 6.27 -103.34 -0.65 -4.93 16 10 C 0.16 2.51 11.04 -16.61 -0.18 2.32 16 11 N -0.45 -7.86 2.74 -114.21 -0.31 -8.17 16 12 C 0.10 1.81 5.89 -4.04 -0.02 1.79 16 13 C 0.01 0.27 5.30 -27.88 -0.15 0.12 16 14 C -0.53 -13.75 9.11 -34.44 -0.31 -14.06 16 15 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 18 Si 0.90 20.43 29.54 -169.99 -5.02 15.40 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.09 1.62 6.79 -83.97 -0.57 1.04 16 23 C -0.11 -1.77 9.97 -39.43 -0.39 -2.16 16 24 C -0.11 -1.57 10.01 -39.57 -0.40 -1.96 16 25 C -0.14 -1.97 10.03 -39.57 -0.40 -2.37 16 26 C -0.08 -1.25 9.85 -39.37 -0.39 -1.64 16 27 C -0.06 -1.03 6.27 -104.95 -0.66 -1.69 16 28 H 0.22 1.05 7.80 -54.08 -0.42 0.63 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.18 2.33 8.06 -52.49 -0.42 1.91 16 36 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.13 1.97 8.06 -52.48 -0.42 1.55 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 44 H 0.13 1.97 7.45 -52.48 -0.39 1.58 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -31.79 391.05 -9.68 -41.47 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.27 Total: 1.65 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -3.98 Total: -16.51 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.42 Total: -32.92 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.72 Total: -14.98 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.79 -9.68 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769548096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.578 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds