Wall clock time and date at job start Tue Mar 31 2020 15:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46860 * 235.03512 * 3 2 1 5 5 C 1.53002 * 109.46965 * 180.02562 * 4 3 2 6 6 O 1.45206 * 109.47129 * 180.02562 * 5 4 3 7 7 C 1.34841 * 116.99711 * 180.02562 * 6 5 4 8 8 O 1.21593 * 120.00202 * 0.02562 * 7 6 5 9 9 C 1.46742 * 119.99685 * 180.02562 * 7 6 5 10 10 C 1.36470 * 126.77937 * 0.02562 * 9 7 6 11 11 N 1.35403 * 109.76001 * 179.97438 * 10 9 7 12 12 C 1.46499 * 124.77568 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47188 * 265.03107 * 12 11 10 14 14 C 1.50701 * 109.47134 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99916 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00283 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00057 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46800 * 90.00052 * 18 16 14 20 20 H 1.48497 * 109.47278 * 210.00021 * 18 16 14 21 21 H 1.48497 * 109.46893 * 330.00025 * 18 16 14 22 22 C 1.37977 * 110.45146 * 0.02562 * 11 10 9 23 23 C 1.39121 * 133.17920 * 180.02562 * 22 11 10 24 24 C 1.37764 * 119.93357 * 179.97438 * 23 22 11 25 25 C 1.38746 * 120.63018 * 359.97438 * 24 23 22 26 26 C 1.37766 * 120.29994 * 0.02562 * 25 24 23 27 27 C 1.39267 * 119.66871 * 359.73215 * 26 25 24 28 28 H 4.44647 * 5.63421 * 179.97438 * 4 1 2 29 29 H 1.09004 * 109.46939 * 115.03964 * 3 2 1 30 30 H 1.08992 * 109.47557 * 355.04118 * 3 2 1 31 31 H 1.09004 * 109.46976 * 60.00474 * 4 3 2 32 32 H 1.09004 * 109.47878 * 300.00343 * 4 3 2 33 33 H 1.09004 * 109.46930 * 60.00393 * 5 4 3 34 34 H 1.09000 * 109.47312 * 300.00337 * 5 4 3 35 35 H 1.07995 * 125.12107 * 359.95090 * 10 9 7 36 36 H 1.09007 * 109.47169 * 25.02647 * 12 11 10 37 37 H 1.08994 * 109.47483 * 145.02724 * 12 11 10 38 38 H 1.08998 * 109.46923 * 299.99777 * 13 12 11 39 39 H 1.08999 * 109.47210 * 59.99961 * 13 12 11 40 40 H 0.96998 * 120.00201 * 180.02562 * 17 16 14 41 41 H 1.08007 * 120.03352 * 0.02562 * 23 22 11 42 42 H 1.07997 * 119.68580 * 179.97438 * 24 23 22 43 43 H 1.08003 * 119.85254 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.16382 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.8275 1.1821 5 6 4.6856 0.8288 1.1818 6 8 5.1693 1.6130 2.3040 7 6 6.5060 1.7157 2.4482 8 8 7.2469 1.1649 1.6569 9 6 7.0665 2.4921 3.5601 10 6 6.3684 3.1619 4.5227 11 7 7.2292 3.7604 5.3795 12 6 6.8316 4.5666 6.5363 13 6 6.8120 6.0456 6.1447 14 6 6.4024 6.8748 7.3345 15 1 6.1780 6.3950 8.2757 16 6 6.3141 8.2461 7.2215 17 7 6.5868 8.8304 6.0753 18 14 5.8056 9.2740 8.6961 19 1 7.0130 9.6642 9.4675 20 1 5.1006 10.4947 8.2292 21 1 4.8989 8.4802 9.5638 22 6 8.5337 3.5051 5.0093 23 6 9.7643 3.8772 5.5407 24 6 10.9292 3.4581 4.9363 25 6 10.8895 2.6649 3.7986 26 6 9.6806 2.2860 3.2573 27 6 8.4954 2.6984 3.8611 28 1 -1.0502 0.0000 -0.0003 29 1 3.0092 0.4358 -0.9311 30 1 3.0099 -1.0229 0.0888 31 1 2.7925 0.3924 2.1133 32 1 2.7918 1.8512 1.0933 33 1 5.0484 1.2642 0.2506 34 1 5.0498 -0.1948 1.2704 35 1 5.2916 3.2079 4.5906 36 1 5.8371 4.2647 6.8650 37 1 7.5439 4.4148 7.3472 38 1 7.8064 6.3475 5.8160 39 1 6.0996 6.1974 5.3339 40 1 6.5251 9.7952 5.9959 41 1 9.8065 4.4934 6.4268 42 1 11.8823 3.7496 5.3521 43 1 11.8105 2.3438 3.3347 44 1 9.6523 1.6683 2.3718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769548096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:41 Heat of formation + Delta-G solvation = -7.369640 kcal Electronic energy + Delta-G solvation = -25639.815971 eV Core-core repulsion = 21908.973496 eV Total energy + Delta-G solvation = -3730.842475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.56750 -41.00921 -38.19608 -37.69570 -36.16323 -35.85835 -34.10798 -32.76426 -31.93731 -30.32279 -30.17622 -27.99231 -26.88793 -24.52921 -23.98085 -23.23275 -22.72881 -21.78987 -21.01225 -19.11529 -18.82820 -18.47485 -17.92209 -17.62258 -17.19760 -16.67834 -16.54401 -16.24730 -16.06613 -15.60707 -15.33629 -15.02237 -14.81232 -14.47018 -14.32444 -14.09360 -14.08267 -13.82195 -13.64680 -13.47788 -12.90816 -12.83497 -12.62111 -12.55626 -12.39369 -12.37152 -12.05720 -12.01681 -11.68328 -11.51600 -11.47977 -11.41146 -11.14939 -10.99671 -10.65899 -10.60268 -9.25943 -8.74369 -8.25254 -6.38884 -0.05611 0.53103 0.88341 1.41881 1.42392 1.50826 1.53739 1.80016 1.92618 2.03275 2.16786 2.39585 2.95114 3.09720 3.45096 3.63587 3.68686 3.83067 3.92125 4.06174 4.07162 4.19882 4.26396 4.28013 4.40758 4.42871 4.49659 4.54465 4.62942 4.65589 4.67864 4.74655 4.78821 5.06756 5.09207 5.16419 5.18694 5.34955 5.36607 5.44276 5.49748 5.60730 5.65710 5.69636 5.80723 6.01560 6.18249 6.22531 6.71225 6.77707 6.86213 7.32314 8.86338 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008469 B = 0.002997 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.533489 B = 9341.661793 C =12257.048378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.218 4.218 3 C -0.007 4.007 4 C -0.106 4.106 5 C 0.065 3.935 6 O -0.359 6.359 7 C 0.550 3.450 8 O -0.546 6.546 9 C -0.270 4.270 10 C 0.160 3.840 11 N -0.458 5.458 12 C 0.116 3.884 13 C 0.020 3.980 14 C -0.541 4.541 15 H 0.075 0.925 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.257 1.257 22 C 0.066 3.934 23 C -0.128 4.128 24 C -0.104 4.104 25 C -0.131 4.131 26 C -0.093 4.093 27 C -0.082 4.082 28 H 0.242 0.758 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.208 0.792 36 H 0.109 0.891 37 H 0.092 0.908 38 H -0.009 1.009 39 H -0.005 1.005 40 H 0.264 0.736 41 H 0.125 0.875 42 H 0.157 0.843 43 H 0.155 0.845 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 -17.259 -6.821 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.218 4.218 3 C -0.043 4.043 4 C -0.143 4.143 5 C -0.009 4.009 6 O -0.276 6.276 7 C 0.398 3.602 8 O -0.438 6.438 9 C -0.278 4.278 10 C 0.024 3.976 11 N -0.135 5.135 12 C -0.003 4.003 13 C -0.017 4.017 14 C -0.579 4.579 15 H 0.093 0.907 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.792 3.208 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.181 1.181 22 C -0.038 4.038 23 C -0.148 4.148 24 C -0.122 4.122 25 C -0.149 4.149 26 C -0.112 4.112 27 C -0.085 4.085 28 H 0.258 0.742 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.225 0.775 36 H 0.128 0.872 37 H 0.111 0.889 38 H 0.010 0.990 39 H 0.014 0.986 40 H 0.073 0.927 41 H 0.143 0.857 42 H 0.174 0.826 43 H 0.173 0.827 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.884 -17.078 -6.852 18.626 hybrid contribution -0.481 0.981 0.265 1.125 sum -3.365 -16.096 -6.587 17.715 Atomic orbital electron populations 1.25723 0.97000 1.00058 0.99674 1.23484 0.95339 1.01427 1.01594 1.18597 0.84413 1.02231 0.99100 1.21411 0.91329 1.01909 0.99661 1.23205 0.95037 0.95490 0.87131 1.86529 1.23039 1.67847 1.50199 1.19870 0.80322 0.77106 0.82872 1.90763 1.60893 1.47258 1.44887 1.19017 0.92292 1.14678 1.01846 1.22738 0.97512 0.89905 0.87479 1.44435 1.04304 1.40407 1.24372 1.22209 1.02656 0.90592 0.84856 1.19257 0.95611 0.90422 0.96442 1.21461 1.46639 0.92132 0.97656 0.90691 1.25967 0.95058 0.99670 0.98834 1.70116 1.49700 1.10622 1.26716 0.85411 0.78634 0.77895 0.78908 1.19905 1.21285 1.18089 1.18589 0.86113 1.01558 0.97524 1.20419 0.89682 1.02705 1.01972 1.21186 0.97708 0.97508 0.95844 1.21300 0.97785 0.99148 0.96711 1.20734 0.90706 0.99976 0.99772 1.18961 0.92417 1.00937 0.96232 0.74174 0.88082 0.87758 0.90283 0.90785 0.90809 0.90293 0.77499 0.87244 0.88948 0.99030 0.98623 0.92715 0.85687 0.82556 0.82690 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.12 19.25 74.32 1.43 -1.69 16 2 C -0.22 -3.70 13.34 31.13 0.42 -3.28 16 3 C -0.01 -0.09 5.70 28.79 0.16 0.07 16 4 C -0.11 -1.70 5.55 30.59 0.17 -1.53 16 5 C 0.06 1.30 5.48 71.98 0.39 1.70 16 6 O -0.36 -9.75 10.05 -57.53 -0.58 -10.33 16 7 C 0.55 17.98 7.93 70.04 0.56 18.54 16 8 O -0.55 -19.62 15.95 19.53 0.31 -19.31 16 9 C -0.27 -9.26 6.27 -19.03 -0.12 -9.38 16 10 C 0.16 5.09 11.04 83.73 0.92 6.02 16 11 N -0.46 -16.12 2.74 -515.26 -1.41 -17.53 16 12 C 0.12 4.20 5.89 86.38 0.51 4.71 16 13 C 0.02 0.99 5.30 29.85 0.16 1.15 16 14 C -0.54 -27.91 9.11 25.60 0.23 -27.68 16 15 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.93 -54.78 13.29 21.45 0.28 -54.50 16 18 Si 0.97 41.63 29.54 68.60 2.03 43.66 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 C 0.07 2.37 6.79 38.91 0.26 2.64 16 23 C -0.13 -4.15 9.97 22.37 0.22 -3.93 16 24 C -0.10 -2.76 10.01 22.28 0.22 -2.53 16 25 C -0.13 -3.43 10.03 22.28 0.22 -3.20 16 26 C -0.09 -2.97 9.85 22.41 0.22 -2.75 16 27 C -0.08 -2.94 6.27 -20.08 -0.13 -3.06 16 28 H 0.24 1.90 7.80 -4.41 -0.03 1.86 16 29 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.21 5.18 8.06 -2.91 -0.02 5.15 16 36 H 0.11 3.41 8.11 -2.38 -0.02 3.39 16 37 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 42 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 43 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 44 H 0.13 3.95 7.45 -2.91 -0.02 3.93 16 Total: -1.00 -69.97 391.05 7.94 -62.03 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.98 Total: 19.53 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 6.33 Total: -23.56 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -1.13 Total: -72.03 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.27 Total: -29.64 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -69.97 7.94 -62.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769548096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.661 kcal (2) G-P(sol) polarization free energy of solvation -69.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds