Wall clock time and date at job start Tue Mar 31 2020 14:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52993 * 109.47369 * 2 1 4 4 C 1.50706 * 109.46948 * 120.00083 * 2 1 3 5 5 C 1.38624 * 119.54424 * 274.99741 * 4 2 1 6 6 C 1.38578 * 119.35581 * 180.02562 * 5 4 2 7 7 C 1.38630 * 118.49413 * 359.97438 * 6 5 4 8 8 C 1.39309 * 119.05406 * 0.02562 * 7 6 5 9 9 C 1.48066 * 119.72662 * 180.02562 * 8 7 6 10 10 O 1.21429 * 119.99955 * 359.97438 * 9 8 7 11 11 O 1.34677 * 120.00100 * 180.02562 * 9 8 7 12 12 C 1.45201 * 117.00018 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47080 * 179.97438 * 12 11 9 14 14 C 1.38633 * 119.74777 * 269.72900 * 13 12 11 15 15 C 1.37625 * 120.24256 * 179.72346 * 14 13 12 16 16 C 1.40711 * 119.74686 * 0.56803 * 15 14 13 17 17 C 1.41390 * 120.24688 * 179.68367 * 16 15 14 18 18 H 1.07998 * 120.00492 * 155.30861 * 17 16 15 19 19 C 1.39944 * 119.99951 * 335.31258 * 17 16 15 20 20 N 1.30823 * 120.00270 * 342.23267 * 19 17 16 21 21 Si 1.86805 * 120.00380 * 162.23095 * 19 17 16 22 22 H 1.48501 * 109.47083 * 94.66438 * 21 19 17 23 23 H 1.48494 * 109.47212 * 214.66749 * 21 19 17 24 24 H 1.48506 * 109.46694 * 334.66766 * 21 19 17 25 25 C 1.40716 * 119.51110 * 359.70766 * 16 15 14 26 26 C 1.37616 * 119.74684 * 359.97438 * 25 16 15 27 27 N 1.31470 * 119.54972 * 94.72922 * 4 2 1 28 28 H 1.09003 * 109.47511 * 300.00032 * 1 2 3 29 29 H 1.09008 * 109.47142 * 60.00213 * 1 2 3 30 30 H 1.09001 * 109.47408 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47107 * 239.99650 * 2 1 3 32 32 H 1.09007 * 109.47604 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47296 * 299.99570 * 3 2 1 34 34 H 1.09000 * 109.47292 * 59.99763 * 3 2 1 35 35 H 1.07996 * 120.32338 * 359.97438 * 5 4 2 36 36 H 1.08004 * 120.75256 * 180.02562 * 6 5 4 37 37 H 1.07999 * 120.47266 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47388 * 300.00004 * 12 11 9 39 39 H 1.08997 * 109.47090 * 60.00338 * 12 11 9 40 40 H 1.07996 * 119.88134 * 359.97438 * 14 13 12 41 41 H 1.07997 * 120.12220 * 180.27976 * 15 14 13 42 42 H 0.96995 * 120.00662 * 180.02562 * 20 19 17 43 43 H 1.07996 * 120.12986 * 179.97438 * 25 16 15 44 44 H 1.08000 * 119.87664 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 1.2305 5 6 2.1610 -0.0098 2.4197 6 6 2.6238 -0.6668 3.5486 7 6 2.9431 -2.0120 3.4467 8 6 2.7890 -2.6528 2.2194 9 6 3.1251 -4.0893 2.0939 10 8 3.5336 -4.7038 3.0583 11 8 2.9787 -4.7142 0.9099 12 6 3.3278 -6.1227 0.8602 13 6 3.1006 -6.6478 -0.5340 14 6 1.8681 -7.1832 -0.8750 15 6 1.6477 -7.6604 -2.1469 16 6 2.6827 -7.6143 -3.0991 17 6 2.4699 -8.1077 -4.4069 18 1 3.0662 -7.7373 -5.2276 19 6 1.4864 -9.0761 -4.6379 20 7 1.0090 -9.7746 -3.6401 21 14 0.8552 -9.3715 -6.3711 22 1 1.6102 -10.4911 -6.9888 23 1 -0.5882 -9.7164 -6.3201 24 1 1.0419 -8.1415 -7.1821 25 6 3.9313 -7.0739 -2.7399 26 6 4.1273 -6.5965 -1.4642 27 7 2.3372 -1.9875 1.1628 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.9040 1.0382 2.4656 36 1 2.7324 -0.1429 4.4869 37 1 3.3069 -2.5552 4.3063 38 1 4.3768 -6.2467 1.1291 39 1 2.7048 -6.6764 1.5626 40 1 1.0768 -7.2223 -0.1411 41 1 0.6854 -8.0729 -2.4118 42 1 0.3276 -10.4461 -3.8002 43 1 4.7328 -7.0339 -3.4626 44 1 5.0847 -6.1809 -1.1864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776114868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:04 Heat of formation + Delta-G solvation = -45.155769 kcal Electronic energy + Delta-G solvation = -25818.573123 eV Core-core repulsion = 22086.092118 eV Total energy + Delta-G solvation = -3732.481005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91014 -39.63434 -37.64049 -36.17597 -35.67643 -33.83848 -32.90057 -30.90566 -30.47565 -29.32470 -27.53500 -27.23654 -25.19265 -24.14072 -23.61845 -21.71898 -21.04261 -20.12969 -20.01030 -17.98598 -17.35412 -17.18932 -16.28250 -16.10002 -16.06193 -15.33487 -15.00949 -14.67370 -14.33442 -14.16642 -13.86048 -13.67565 -13.54430 -13.04667 -12.85238 -12.64594 -12.42387 -12.29860 -12.24250 -11.98787 -11.66429 -11.50857 -11.42280 -11.23074 -11.13689 -11.09541 -10.70246 -10.58869 -10.43527 -10.17961 -10.11452 -9.71205 -9.59488 -9.43175 -9.26792 -9.17837 -7.51501 -7.41116 -6.83735 -4.42529 0.38240 0.97950 2.42468 2.48952 2.92626 3.03888 3.06225 3.09842 3.29349 3.63675 3.86723 3.88618 4.33670 4.52296 4.66601 4.74097 4.77300 4.85320 4.94510 5.00020 5.20786 5.36753 5.44065 5.54685 5.63101 5.64510 5.66176 5.70113 5.72387 5.78045 5.86059 6.03457 6.05130 6.11902 6.29680 6.32335 6.35909 6.74889 6.91268 7.00975 7.22470 7.30567 7.55988 7.59003 7.78287 7.99782 8.04776 8.06564 8.23242 8.57753 8.82388 8.90929 10.10493 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014142 B = 0.002648 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.427779 B =10570.065972 C =11921.590150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.147 4.147 4 C 0.134 3.866 5 C -0.145 4.145 6 C -0.083 4.083 7 C -0.117 4.117 8 C 0.102 3.898 9 C 0.514 3.486 10 O -0.511 6.511 11 O -0.323 6.323 12 C 0.132 3.868 13 C -0.233 4.233 14 C -0.074 4.074 15 C -0.170 4.170 16 C 0.119 3.881 17 C -0.457 4.457 18 H 0.080 0.920 19 C 0.076 3.924 20 N -0.787 5.787 21 Si 0.909 3.091 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.230 4.230 26 C -0.062 4.062 27 N -0.427 5.427 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.282 0.718 43 H 0.094 0.906 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.794 18.775 10.109 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 C -0.204 4.204 4 C -0.007 4.007 5 C -0.165 4.165 6 C -0.109 4.109 7 C -0.137 4.137 8 C -0.035 4.035 9 C 0.357 3.643 10 O -0.401 6.401 11 O -0.238 6.238 12 C 0.060 3.940 13 C -0.234 4.234 14 C -0.092 4.092 15 C -0.189 4.189 16 C 0.117 3.883 17 C -0.485 4.485 18 H 0.098 0.902 19 C -0.143 4.143 20 N -0.412 5.412 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.249 4.249 26 C -0.081 4.081 27 N -0.138 5.138 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.137 0.863 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.913 17.831 9.634 20.288 hybrid contribution -0.138 0.000 0.230 0.268 sum -1.051 17.831 9.864 20.404 Atomic orbital electron populations 1.21808 0.93342 1.02790 1.02014 1.20106 0.96434 0.95268 0.95062 1.21929 1.01411 0.94762 1.02337 1.21382 0.94905 0.89269 0.95179 1.22291 0.99208 1.01784 0.93196 1.21581 0.96348 0.93744 0.99191 1.22110 0.98293 0.95248 0.98027 1.20264 1.00429 0.92283 0.90509 1.20832 0.74691 0.86638 0.82117 1.90805 1.43142 1.66578 1.39526 1.86897 1.76739 1.27879 1.32248 1.21827 0.99445 0.75740 0.96949 1.18629 0.97022 1.13615 0.94138 1.20532 0.94567 0.97850 0.96300 1.21280 0.99790 1.04918 0.92917 1.17679 0.89978 0.87734 0.92930 1.19661 1.15687 1.18692 0.94507 0.90197 1.25966 0.94834 0.94306 0.99213 1.69823 1.22256 1.15784 1.33294 0.86289 0.78580 0.79643 0.82204 1.19490 1.19946 1.18297 1.20943 0.97228 1.11122 0.95643 1.20379 0.96390 0.97735 0.93558 1.67552 1.07456 1.08524 1.30298 0.92682 0.91631 0.91900 0.88504 0.92281 0.91561 0.92283 0.83983 0.83811 0.83287 0.91913 0.91842 0.89346 0.86301 0.90689 0.88730 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.17 37.15 0.34 -0.88 16 2 C -0.05 -0.47 3.23 -91.78 -0.30 -0.77 16 3 C -0.15 -0.98 8.62 37.15 0.32 -0.66 16 4 C 0.13 1.55 5.79 -82.60 -0.48 1.07 16 5 C -0.14 -1.26 9.18 -39.31 -0.36 -1.62 16 6 C -0.08 -0.70 10.17 -39.31 -0.40 -1.10 16 7 C -0.12 -1.34 9.63 -39.04 -0.38 -1.72 16 8 C 0.10 1.55 6.75 -83.03 -0.56 0.99 16 9 C 0.51 9.23 7.95 34.76 0.28 9.50 16 10 O -0.51 -9.54 16.11 -19.21 -0.31 -9.85 16 11 O -0.32 -6.51 10.02 -40.43 -0.41 -6.92 16 12 C 0.13 2.65 5.59 36.01 0.20 2.85 16 13 C -0.23 -5.34 5.54 -104.33 -0.58 -5.92 16 14 C -0.07 -1.78 9.67 -39.66 -0.38 -2.16 16 15 C -0.17 -4.45 8.70 -38.87 -0.34 -4.79 16 16 C 0.12 3.20 5.57 -106.83 -0.60 2.60 16 17 C -0.46 -12.03 9.05 -37.74 -0.34 -12.37 16 18 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 19 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 20 N -0.79 -20.12 10.97 55.55 0.61 -19.51 16 21 Si 0.91 18.38 29.60 -169.99 -5.03 13.34 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 C -0.23 -5.71 9.80 -38.87 -0.38 -6.09 16 26 C -0.06 -1.44 9.67 -39.66 -0.38 -1.82 16 27 N -0.43 -6.54 10.03 -6.07 -0.06 -6.60 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.30 6.48 -51.93 -0.34 -0.03 16 35 H 0.14 0.79 6.30 -52.49 -0.33 0.46 16 36 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.15 1.54 7.64 -52.49 -0.40 1.14 16 38 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 39 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 40 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 41 H 0.12 3.19 6.18 -52.49 -0.32 2.86 16 42 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 43 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 44 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -30.17 377.30 -9.94 -40.11 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.01 Total: 4.85 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -4.42 Total: -21.10 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.55 Total: -26.11 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.71 Total: -16.77 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.17 -9.94 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.048 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds