Wall clock time and date at job start Tue Mar 31 2020 14:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52993 * 109.47369 * 2 1 4 4 C 1.50706 * 109.46948 * 120.00083 * 2 1 3 5 5 C 1.38624 * 119.54424 * 274.99741 * 4 2 1 6 6 C 1.38578 * 119.35581 * 180.02562 * 5 4 2 7 7 C 1.38630 * 118.49413 * 359.97438 * 6 5 4 8 8 C 1.39309 * 119.05406 * 0.02562 * 7 6 5 9 9 C 1.48066 * 119.72662 * 180.02562 * 8 7 6 10 10 O 1.21429 * 119.99955 * 359.97438 * 9 8 7 11 11 O 1.34677 * 120.00100 * 180.02562 * 9 8 7 12 12 C 1.45201 * 117.00018 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47080 * 179.97438 * 12 11 9 14 14 C 1.38633 * 119.74777 * 269.72900 * 13 12 11 15 15 C 1.37625 * 120.24256 * 179.72346 * 14 13 12 16 16 C 1.40711 * 119.74686 * 0.56803 * 15 14 13 17 17 C 1.41390 * 120.24688 * 179.68367 * 16 15 14 18 18 H 1.07998 * 120.00492 * 155.30861 * 17 16 15 19 19 C 1.39944 * 119.99951 * 335.31258 * 17 16 15 20 20 N 1.30823 * 120.00270 * 342.23267 * 19 17 16 21 21 Si 1.86805 * 120.00380 * 162.23095 * 19 17 16 22 22 H 1.48501 * 109.47083 * 94.66438 * 21 19 17 23 23 H 1.48494 * 109.47212 * 214.66749 * 21 19 17 24 24 H 1.48506 * 109.46694 * 334.66766 * 21 19 17 25 25 C 1.40716 * 119.51110 * 359.70766 * 16 15 14 26 26 C 1.37616 * 119.74684 * 359.97438 * 25 16 15 27 27 N 1.31470 * 119.54972 * 94.72922 * 4 2 1 28 28 H 1.09003 * 109.47511 * 300.00032 * 1 2 3 29 29 H 1.09008 * 109.47142 * 60.00213 * 1 2 3 30 30 H 1.09001 * 109.47408 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47107 * 239.99650 * 2 1 3 32 32 H 1.09007 * 109.47604 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47296 * 299.99570 * 3 2 1 34 34 H 1.09000 * 109.47292 * 59.99763 * 3 2 1 35 35 H 1.07996 * 120.32338 * 359.97438 * 5 4 2 36 36 H 1.08004 * 120.75256 * 180.02562 * 6 5 4 37 37 H 1.07999 * 120.47266 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47388 * 300.00004 * 12 11 9 39 39 H 1.08997 * 109.47090 * 60.00338 * 12 11 9 40 40 H 1.07996 * 119.88134 * 359.97438 * 14 13 12 41 41 H 1.07997 * 120.12220 * 180.27976 * 15 14 13 42 42 H 0.96995 * 120.00662 * 180.02562 * 20 19 17 43 43 H 1.07996 * 120.12986 * 179.97438 * 25 16 15 44 44 H 1.08000 * 119.87664 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 1.2305 5 6 2.1610 -0.0098 2.4197 6 6 2.6238 -0.6668 3.5486 7 6 2.9431 -2.0120 3.4467 8 6 2.7890 -2.6528 2.2194 9 6 3.1251 -4.0893 2.0939 10 8 3.5336 -4.7038 3.0583 11 8 2.9787 -4.7142 0.9099 12 6 3.3278 -6.1227 0.8602 13 6 3.1006 -6.6478 -0.5340 14 6 1.8681 -7.1832 -0.8750 15 6 1.6477 -7.6604 -2.1469 16 6 2.6827 -7.6143 -3.0991 17 6 2.4699 -8.1077 -4.4069 18 1 3.0662 -7.7373 -5.2276 19 6 1.4864 -9.0761 -4.6379 20 7 1.0090 -9.7746 -3.6401 21 14 0.8552 -9.3715 -6.3711 22 1 1.6102 -10.4911 -6.9888 23 1 -0.5882 -9.7164 -6.3201 24 1 1.0419 -8.1415 -7.1821 25 6 3.9313 -7.0739 -2.7399 26 6 4.1273 -6.5965 -1.4642 27 7 2.3372 -1.9875 1.1628 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.9040 1.0382 2.4656 36 1 2.7324 -0.1429 4.4869 37 1 3.3069 -2.5552 4.3063 38 1 4.3768 -6.2467 1.1291 39 1 2.7048 -6.6764 1.5626 40 1 1.0768 -7.2223 -0.1411 41 1 0.6854 -8.0729 -2.4118 42 1 0.3276 -10.4461 -3.8002 43 1 4.7328 -7.0339 -3.4626 44 1 5.0847 -6.1809 -1.1864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776114868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:03 Heat of formation + Delta-G solvation = -59.523692 kcal Electronic energy + Delta-G solvation = -25819.196163 eV Core-core repulsion = 22086.092118 eV Total energy + Delta-G solvation = -3733.104045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97161 -40.89139 -39.49328 -37.63241 -36.51025 -35.71003 -33.76371 -32.61996 -31.49349 -31.25753 -29.06456 -28.06870 -26.45473 -25.20639 -24.93341 -22.99847 -22.79018 -21.86570 -21.08886 -19.30108 -19.20350 -18.23531 -17.55929 -17.48898 -17.13356 -16.93227 -16.13717 -15.81969 -15.68702 -15.57312 -15.28339 -14.87241 -14.54824 -14.27606 -14.09430 -14.00647 -13.88952 -13.61903 -13.38418 -13.27892 -13.07917 -12.81092 -12.79002 -12.51358 -12.43057 -12.23053 -12.08594 -11.85293 -11.81320 -11.74142 -11.51606 -11.32792 -11.05221 -10.99236 -10.54007 -10.13800 -9.46768 -9.36680 -8.70877 -6.41553 -0.57604 0.19052 0.68328 1.08137 1.29353 1.36883 1.40758 1.53179 1.78205 2.18592 2.66564 2.69328 2.96760 3.52201 3.68959 3.81755 3.89728 3.99627 4.02758 4.05362 4.15320 4.25651 4.28486 4.35248 4.43755 4.47212 4.50908 4.71023 4.82577 4.95304 4.95858 4.96775 4.98193 5.05865 5.09677 5.24088 5.26255 5.30375 5.36360 5.37096 5.42670 5.56745 5.62243 5.84584 6.02885 6.11028 6.28762 6.46572 6.61322 6.86073 6.88373 6.94443 8.26454 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014142 B = 0.002648 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.427779 B =10570.065972 C =11921.590150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 C -0.140 4.140 4 C 0.117 3.883 5 C -0.125 4.125 6 C -0.069 4.069 7 C -0.112 4.112 8 C 0.063 3.937 9 C 0.512 3.488 10 O -0.526 6.526 11 O -0.343 6.343 12 C 0.137 3.863 13 C -0.231 4.231 14 C -0.080 4.080 15 C -0.192 4.192 16 C 0.089 3.911 17 C -0.492 4.492 18 H 0.081 0.919 19 C 0.035 3.965 20 N -0.818 5.818 21 Si 0.986 3.014 22 H -0.260 1.260 23 H -0.265 1.265 24 H -0.258 1.258 25 C -0.245 4.245 26 C -0.065 4.065 27 N -0.473 5.473 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.185 0.815 36 H 0.192 0.808 37 H 0.157 0.843 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.291 0.709 43 H 0.104 0.896 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.016 21.800 11.414 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.198 4.198 4 C -0.024 4.024 5 C -0.144 4.144 6 C -0.094 4.094 7 C -0.132 4.132 8 C -0.072 4.072 9 C 0.357 3.643 10 O -0.416 6.416 11 O -0.258 6.258 12 C 0.065 3.935 13 C -0.232 4.232 14 C -0.099 4.099 15 C -0.212 4.212 16 C 0.087 3.913 17 C -0.521 4.521 18 H 0.099 0.901 19 C -0.181 4.181 20 N -0.444 5.444 21 Si 0.806 3.194 22 H -0.185 1.185 23 H -0.189 1.189 24 H -0.181 1.181 25 C -0.264 4.264 26 C -0.083 4.083 27 N -0.185 5.185 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.202 0.798 36 H 0.209 0.791 37 H 0.175 0.825 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.122 0.878 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.121 20.858 10.963 23.590 hybrid contribution -0.053 -0.789 -0.027 0.792 sum -1.174 20.068 10.936 22.885 Atomic orbital electron populations 1.21790 0.92756 1.01374 1.03670 1.20178 0.96905 0.96756 0.93295 1.21905 1.01143 0.92598 1.04106 1.21845 0.94995 0.88390 0.97185 1.22754 0.96551 1.03385 0.91692 1.22121 0.94123 0.92225 1.00952 1.22328 0.97595 0.96731 0.96591 1.20083 1.03900 0.90862 0.92316 1.21434 0.73958 0.87931 0.81002 1.90770 1.44067 1.67296 1.39515 1.86854 1.77421 1.27495 1.34028 1.21668 1.00385 0.76309 0.95130 1.18945 0.96340 1.12429 0.95487 1.20758 0.95684 0.97475 0.95962 1.21250 0.99407 1.06465 0.94033 1.18040 0.90879 0.88753 0.93667 1.19922 1.17511 1.20105 0.94550 0.90138 1.26859 0.94285 0.93341 1.03649 1.69869 1.22690 1.16233 1.35572 0.85145 0.78237 0.79599 0.76468 1.18461 1.18912 1.18131 1.21161 0.97023 1.11474 0.96738 1.20689 0.97633 0.97026 0.92953 1.67394 1.09105 1.10686 1.31296 0.90625 0.90348 0.94824 0.91449 0.92653 0.90622 0.89716 0.79784 0.79084 0.82489 0.90635 0.91194 0.87835 0.87724 0.89819 0.87771 0.86640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.17 71.98 0.66 -1.57 16 2 C -0.05 -0.94 3.23 -11.54 -0.04 -0.98 16 3 C -0.14 -1.46 8.62 71.98 0.62 -0.84 16 4 C 0.12 2.56 5.79 42.71 0.25 2.81 16 5 C -0.12 -1.65 9.18 22.44 0.21 -1.45 16 6 C -0.07 -0.87 10.17 22.44 0.23 -0.65 16 7 C -0.11 -2.36 9.63 22.62 0.22 -2.14 16 8 C 0.06 1.93 6.75 41.87 0.28 2.21 16 9 C 0.51 18.78 7.95 70.43 0.56 19.34 16 10 O -0.53 -19.83 16.11 20.07 0.32 -19.50 16 11 O -0.34 -14.21 10.02 -55.86 -0.56 -14.77 16 12 C 0.14 5.57 5.59 71.24 0.40 5.97 16 13 C -0.23 -10.80 5.54 -19.67 -0.11 -10.91 16 14 C -0.08 -4.01 9.67 22.22 0.21 -3.79 16 15 C -0.19 -10.56 8.70 22.73 0.20 -10.37 16 16 C 0.09 4.98 5.57 -21.29 -0.12 4.86 16 17 C -0.49 -26.92 9.05 23.46 0.21 -26.71 16 18 H 0.08 4.21 7.91 -2.91 -0.02 4.19 16 19 C 0.03 1.76 5.14 85.26 0.44 2.20 16 20 N -0.82 -43.11 10.97 21.83 0.24 -42.88 16 21 Si 0.99 38.12 29.60 68.60 2.03 40.15 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 24 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 25 C -0.24 -12.53 9.80 22.73 0.22 -12.30 16 26 C -0.06 -3.04 9.67 22.22 0.21 -2.83 16 27 N -0.47 -14.70 10.03 -173.12 -1.74 -16.44 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.44 6.48 -2.39 -0.02 0.43 16 35 H 0.19 0.87 6.30 -2.91 -0.02 0.85 16 36 H 0.19 0.65 8.06 -2.91 -0.02 0.62 16 37 H 0.16 2.96 7.64 -2.91 -0.02 2.94 16 38 H 0.08 2.84 8.08 -2.39 -0.02 2.82 16 39 H 0.07 2.71 8.07 -2.39 -0.02 2.69 16 40 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 41 H 0.10 5.94 6.18 -2.91 -0.02 5.92 16 42 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 43 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 44 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -70.39 377.30 5.96 -64.43 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 1.01 Total: 26.16 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 4.66 Total: -37.15 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -1.50 Total: -59.31 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.24 Total: -34.28 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -70.39 5.96 -64.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.911 kcal (2) G-P(sol) polarization free energy of solvation -70.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds