Wall clock time and date at job start Tue Mar 31 2020 13:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35982 * 116.99874 * 2 1 4 4 C 1.38554 * 120.07979 * 0.02562 * 3 2 1 5 5 C 1.38241 * 120.01300 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.91319 * 179.97438 * 5 4 3 7 7 C 1.38288 * 120.17913 * 359.75006 * 5 4 3 8 8 C 1.38198 * 120.16204 * 0.50269 * 7 5 4 9 9 C 1.38728 * 119.98374 * 359.50311 * 8 7 5 10 10 N 1.40127 * 120.08761 * 180.23151 * 9 8 7 11 11 C 1.34777 * 120.00244 * 19.41724 * 10 9 8 12 12 O 1.21299 * 119.99845 * 5.40205 * 11 10 9 13 13 C 1.50693 * 120.00186 * 185.40533 * 11 10 9 14 14 C 1.50696 * 109.47242 * 179.97438 * 13 11 10 15 15 C 1.37641 * 120.13121 * 264.99765 * 14 13 11 16 16 C 1.38615 * 120.24900 * 179.97438 * 15 14 13 17 17 C 1.38649 * 120.50075 * 0.02928 * 16 15 14 18 18 C 1.37595 * 120.25225 * 0.02562 * 17 16 15 19 19 C 1.40694 * 120.12525 * 84.72633 * 14 13 11 20 20 C 1.41398 * 120.24611 * 359.97438 * 19 14 13 21 21 H 1.08001 * 119.99877 * 330.86400 * 20 19 14 22 22 C 1.39940 * 120.00200 * 150.86656 * 20 19 14 23 23 N 1.30827 * 120.00339 * 167.42303 * 22 20 19 24 24 Si 1.86803 * 120.00339 * 347.42486 * 22 20 19 25 25 H 1.48505 * 109.46858 * 95.30046 * 24 22 20 26 26 H 1.48495 * 109.47296 * 215.30206 * 24 22 20 27 27 H 1.48505 * 109.46910 * 335.30801 * 24 22 20 28 28 H 1.09001 * 109.46821 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47218 * 300.00323 * 1 2 3 30 30 H 1.09000 * 109.47380 * 60.00497 * 1 2 3 31 31 H 1.07993 * 119.99403 * 359.95964 * 4 3 2 32 32 H 1.08997 * 109.47358 * 89.99524 * 6 5 4 33 33 H 1.09000 * 109.47135 * 210.00498 * 6 5 4 34 34 H 1.09002 * 109.46519 * 329.99608 * 6 5 4 35 35 H 1.07993 * 119.91754 * 180.27980 * 7 5 4 36 36 H 1.08001 * 120.00847 * 179.76811 * 8 7 5 37 37 H 0.96996 * 119.99472 * 199.42518 * 10 9 8 38 38 H 1.08996 * 109.47347 * 300.00375 * 13 11 10 39 39 H 1.09005 * 109.46957 * 60.00460 * 13 11 10 40 40 H 1.08000 * 119.87363 * 0.02562 * 15 14 13 41 41 H 1.08001 * 119.74533 * 180.02562 * 16 15 14 42 42 H 1.08005 * 119.87427 * 179.97438 * 17 16 15 43 43 H 1.07999 * 120.13413 * 179.97438 * 18 17 16 44 44 H 0.96991 * 120.00592 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2932 2.3747 0.0005 5 6 1.9222 3.6057 0.0011 6 6 1.1010 4.8692 0.0011 7 6 3.3031 3.6808 0.0063 8 6 4.0613 2.5254 0.0005 9 6 3.4372 1.2865 -0.0001 10 7 4.2039 0.1136 -0.0011 11 6 5.4942 0.1516 0.3866 12 8 5.9645 1.1785 0.8289 13 6 6.3524 -1.0816 0.2706 14 6 7.7420 -0.7750 0.7665 15 6 8.7270 -0.4069 -0.1217 16 6 10.0059 -0.1238 0.3318 17 6 10.3085 -0.2082 1.6822 18 6 9.3399 -0.5752 2.5880 19 6 8.0361 -0.8582 2.1398 20 6 7.0308 -1.2292 3.0623 21 1 5.9958 -1.0021 2.8533 22 6 7.3768 -1.8905 4.2460 23 7 6.4974 -2.0156 5.2066 24 14 9.0944 -2.5947 4.4549 25 1 9.9460 -1.6161 5.1776 26 1 9.0206 -3.8569 5.2336 27 1 9.6820 -2.8706 3.1192 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 0.2147 2.3195 0.0003 32 1 0.9025 5.1736 1.0287 33 1 1.6494 5.6590 -0.5124 34 1 0.1570 4.6889 -0.5132 35 1 3.7900 4.6447 0.0113 36 1 5.1396 2.5870 0.0008 37 1 3.8061 -0.7256 -0.2809 38 1 5.9206 -1.8826 0.8707 39 1 6.4001 -1.3943 -0.7725 40 1 8.5024 -0.3377 -1.1758 41 1 10.7725 0.1646 -0.3722 42 1 11.3084 0.0143 2.0244 43 1 9.5778 -0.6407 3.6394 44 1 6.7373 -2.4737 6.0272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776833165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:03 Heat of formation + Delta-G solvation = -26.718624 kcal Electronic energy + Delta-G solvation = -26935.301561 eV Core-core repulsion = 23203.620051 eV Total energy + Delta-G solvation = -3731.681510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.61816 -39.19597 -37.79204 -37.25143 -34.62292 -33.56095 -32.18140 -31.11528 -30.33188 -30.02703 -27.93580 -27.28077 -25.69277 -24.70311 -22.57815 -21.70642 -21.36445 -20.38255 -19.38307 -17.99704 -17.32329 -17.08868 -16.62872 -15.87256 -15.72175 -15.46137 -15.02639 -14.41019 -14.25256 -13.99654 -13.91662 -13.70192 -13.66054 -13.51560 -13.22309 -12.65973 -12.44657 -12.31462 -12.12854 -12.02433 -11.91325 -11.43277 -11.41613 -11.26962 -11.21255 -10.91588 -10.78979 -10.68064 -10.20419 -10.06483 -9.62606 -9.54969 -9.11884 -9.07247 -8.42641 -7.56098 -7.50327 -7.46427 -6.88947 -4.46288 1.41623 1.53355 2.57035 2.74041 3.14273 3.14826 3.20727 3.24013 3.34489 3.54037 3.96239 4.00858 4.55330 4.75414 4.93238 5.00089 5.04769 5.10175 5.22166 5.35559 5.39513 5.53504 5.55350 5.64654 5.67754 5.84253 5.85071 5.94089 6.07207 6.09722 6.17216 6.24822 6.30237 6.39592 6.58876 6.67689 6.70335 6.78036 6.96839 7.01324 7.22675 7.43678 7.46049 7.67334 7.74932 7.84156 7.92132 8.16062 8.38091 8.68599 8.70257 8.84299 10.13085 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.003499 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.364506 B = 8001.298164 C = 8763.648997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.319 6.319 3 C 0.088 3.912 4 C -0.188 4.188 5 C -0.083 4.083 6 C -0.109 4.109 7 C -0.131 4.131 8 C -0.106 4.106 9 C 0.136 3.864 10 N -0.672 5.672 11 C 0.516 3.484 12 O -0.500 6.500 13 C -0.072 4.072 14 C -0.169 4.169 15 C -0.067 4.067 16 C -0.242 4.242 17 C -0.079 4.079 18 C -0.233 4.233 19 C 0.110 3.890 20 C -0.440 4.440 21 H 0.089 0.911 22 C 0.082 3.918 23 N -0.812 5.812 24 Si 0.913 3.087 25 H -0.273 1.273 26 H -0.295 1.295 27 H -0.239 1.239 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.127 0.873 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.124 0.876 36 H 0.164 0.836 37 H 0.411 0.589 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 4.451 -10.699 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.233 6.233 3 C 0.041 3.959 4 C -0.207 4.207 5 C -0.084 4.084 6 C -0.165 4.165 7 C -0.150 4.150 8 C -0.126 4.126 9 C 0.040 3.960 10 N -0.316 5.316 11 C 0.305 3.695 12 O -0.374 6.374 13 C -0.112 4.112 14 C -0.171 4.171 15 C -0.085 4.085 16 C -0.262 4.262 17 C -0.097 4.097 18 C -0.252 4.252 19 C 0.107 3.893 20 C -0.468 4.468 21 H 0.107 0.893 22 C -0.137 4.137 23 N -0.437 5.437 24 Si 0.741 3.259 25 H -0.200 1.200 26 H -0.223 1.223 27 H -0.163 1.163 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.142 0.858 36 H 0.181 0.819 37 H 0.247 0.753 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.862 4.850 -10.126 15.622 hybrid contribution 0.081 -0.550 0.338 0.651 sum -10.781 4.299 -9.788 15.183 Atomic orbital electron populations 1.22989 0.78510 1.03719 1.01103 1.86003 1.21263 1.26605 1.89458 1.18623 0.90392 0.84811 1.02074 1.20790 0.99312 0.91319 1.09284 1.19612 0.94014 0.94316 1.00500 1.20725 0.98965 0.94715 1.02124 1.20891 0.92754 0.98334 1.03029 1.21676 1.02814 0.89470 0.98647 1.17272 0.86778 0.87867 1.04106 1.43647 1.11783 1.09736 1.66473 1.21370 0.80737 0.91680 0.75729 1.90582 1.72502 1.32741 1.41540 1.20299 0.93916 0.95209 1.01768 1.18990 0.92632 1.12279 0.93212 1.20430 0.93372 0.97725 0.97014 1.20316 0.96530 1.14403 0.94917 1.20572 0.97160 0.98357 0.93614 1.20912 0.95268 1.11451 0.97552 1.17482 0.91729 0.88729 0.91408 1.19468 0.95888 1.31498 0.99969 0.89313 1.26185 0.99314 0.94124 0.94032 1.69667 1.36677 1.32654 1.04658 0.86314 0.81949 0.77418 0.80225 1.19976 1.22311 1.16264 0.88363 0.92782 0.92929 0.85567 0.91365 0.91580 0.92007 0.85836 0.81887 0.75320 0.87840 0.89843 0.89022 0.88973 0.89003 0.88591 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.24 9.85 -19.68 -0.19 -4.43 16 3 C 0.09 1.30 6.70 -39.07 -0.26 1.03 16 4 C -0.19 -2.39 8.69 -39.46 -0.34 -2.74 16 5 C -0.08 -1.05 5.88 -104.60 -0.62 -1.67 16 6 C -0.11 -0.99 10.01 36.00 0.36 -0.63 16 7 C -0.13 -1.88 9.69 -39.58 -0.38 -2.26 16 8 C -0.11 -1.80 8.79 -39.42 -0.35 -2.15 16 9 C 0.14 2.29 6.52 -83.49 -0.54 1.74 16 10 N -0.67 -11.24 5.33 -9.75 -0.05 -11.29 16 11 C 0.52 10.20 7.28 -10.99 -0.08 10.12 16 12 O -0.50 -11.70 12.92 5.54 0.07 -11.63 16 13 C -0.07 -1.37 5.19 -29.04 -0.15 -1.52 16 14 C -0.17 -3.86 4.43 -103.92 -0.46 -4.32 16 15 C -0.07 -1.43 9.66 -39.66 -0.38 -1.81 16 16 C -0.24 -5.18 10.05 -39.29 -0.39 -5.58 16 17 C -0.08 -1.77 10.02 -39.66 -0.40 -2.17 16 18 C -0.23 -5.82 6.89 -38.87 -0.27 -6.09 16 19 C 0.11 2.81 5.19 -106.82 -0.55 2.26 16 20 C -0.44 -11.94 8.63 -37.74 -0.33 -12.26 16 21 H 0.09 2.55 6.94 -52.49 -0.36 2.18 16 22 C 0.08 2.17 5.47 -17.34 -0.09 2.07 16 23 N -0.81 -22.02 13.93 55.55 0.77 -21.25 16 24 Si 0.91 21.14 24.36 -169.99 -4.14 17.00 16 25 H -0.27 -6.24 6.78 56.52 0.38 -5.85 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.24 -5.60 6.44 56.52 0.36 -5.24 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.13 1.26 6.30 -52.49 -0.33 0.93 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.16 3.10 5.40 -52.49 -0.28 2.82 16 37 H 0.41 5.77 8.25 -40.82 -0.34 5.43 16 38 H 0.10 1.97 7.13 -51.93 -0.37 1.60 16 39 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 40 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 42 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 43 H 0.10 2.40 4.19 -52.49 -0.22 2.18 16 44 H 0.28 7.00 8.30 -40.82 -0.34 6.67 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -31.79 360.19 -8.05 -39.84 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -5.69 Total: 11.03 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -4.25 Total: -24.70 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.72 Total: -32.54 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.12 Total: -16.06 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.14 Total: 17.00 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.79 -8.05 -39.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776833165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.125 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds