Wall clock time and date at job start Tue Mar 31 2020 13:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35982 * 116.99874 * 2 1 4 4 C 1.38554 * 120.07979 * 0.02562 * 3 2 1 5 5 C 1.38241 * 120.01300 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.91319 * 179.97438 * 5 4 3 7 7 C 1.38288 * 120.17913 * 359.75006 * 5 4 3 8 8 C 1.38198 * 120.16204 * 0.50269 * 7 5 4 9 9 C 1.38728 * 119.98374 * 359.50311 * 8 7 5 10 10 N 1.40127 * 120.08761 * 180.23151 * 9 8 7 11 11 C 1.34777 * 120.00244 * 19.41724 * 10 9 8 12 12 O 1.21299 * 119.99845 * 5.40205 * 11 10 9 13 13 C 1.50693 * 120.00186 * 185.40533 * 11 10 9 14 14 C 1.50696 * 109.47242 * 179.97438 * 13 11 10 15 15 C 1.37641 * 120.13121 * 264.99765 * 14 13 11 16 16 C 1.38615 * 120.24900 * 179.97438 * 15 14 13 17 17 C 1.38649 * 120.50075 * 0.02928 * 16 15 14 18 18 C 1.37595 * 120.25225 * 0.02562 * 17 16 15 19 19 C 1.40694 * 120.12525 * 84.72633 * 14 13 11 20 20 C 1.41398 * 120.24611 * 359.97438 * 19 14 13 21 21 H 1.08001 * 119.99877 * 330.86400 * 20 19 14 22 22 C 1.39940 * 120.00200 * 150.86656 * 20 19 14 23 23 N 1.30827 * 120.00339 * 167.42303 * 22 20 19 24 24 Si 1.86803 * 120.00339 * 347.42486 * 22 20 19 25 25 H 1.48505 * 109.46858 * 95.30046 * 24 22 20 26 26 H 1.48495 * 109.47296 * 215.30206 * 24 22 20 27 27 H 1.48505 * 109.46910 * 335.30801 * 24 22 20 28 28 H 1.09001 * 109.46821 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47218 * 300.00323 * 1 2 3 30 30 H 1.09000 * 109.47380 * 60.00497 * 1 2 3 31 31 H 1.07993 * 119.99403 * 359.95964 * 4 3 2 32 32 H 1.08997 * 109.47358 * 89.99524 * 6 5 4 33 33 H 1.09000 * 109.47135 * 210.00498 * 6 5 4 34 34 H 1.09002 * 109.46519 * 329.99608 * 6 5 4 35 35 H 1.07993 * 119.91754 * 180.27980 * 7 5 4 36 36 H 1.08001 * 120.00847 * 179.76811 * 8 7 5 37 37 H 0.96996 * 119.99472 * 199.42518 * 10 9 8 38 38 H 1.08996 * 109.47347 * 300.00375 * 13 11 10 39 39 H 1.09005 * 109.46957 * 60.00460 * 13 11 10 40 40 H 1.08000 * 119.87363 * 0.02562 * 15 14 13 41 41 H 1.08001 * 119.74533 * 180.02562 * 16 15 14 42 42 H 1.08005 * 119.87427 * 179.97438 * 17 16 15 43 43 H 1.07999 * 120.13413 * 179.97438 * 18 17 16 44 44 H 0.96991 * 120.00592 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2932 2.3747 0.0005 5 6 1.9222 3.6057 0.0011 6 6 1.1010 4.8692 0.0011 7 6 3.3031 3.6808 0.0063 8 6 4.0613 2.5254 0.0005 9 6 3.4372 1.2865 -0.0001 10 7 4.2039 0.1136 -0.0011 11 6 5.4942 0.1516 0.3866 12 8 5.9645 1.1785 0.8289 13 6 6.3524 -1.0816 0.2706 14 6 7.7420 -0.7750 0.7665 15 6 8.7270 -0.4069 -0.1217 16 6 10.0059 -0.1238 0.3318 17 6 10.3085 -0.2082 1.6822 18 6 9.3399 -0.5752 2.5880 19 6 8.0361 -0.8582 2.1398 20 6 7.0308 -1.2292 3.0623 21 1 5.9958 -1.0021 2.8533 22 6 7.3768 -1.8905 4.2460 23 7 6.4974 -2.0156 5.2066 24 14 9.0944 -2.5947 4.4549 25 1 9.9460 -1.6161 5.1776 26 1 9.0206 -3.8569 5.2336 27 1 9.6820 -2.8706 3.1192 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 0.2147 2.3195 0.0003 32 1 0.9025 5.1736 1.0287 33 1 1.6494 5.6590 -0.5124 34 1 0.1570 4.6889 -0.5132 35 1 3.7900 4.6447 0.0113 36 1 5.1396 2.5870 0.0008 37 1 3.8061 -0.7256 -0.2809 38 1 5.9206 -1.8826 0.8707 39 1 6.4001 -1.3943 -0.7725 40 1 8.5024 -0.3377 -1.1758 41 1 10.7725 0.1646 -0.3722 42 1 11.3084 0.0143 2.0244 43 1 9.5778 -0.6407 3.6394 44 1 6.7373 -2.4737 6.0272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776833165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:02 Heat of formation + Delta-G solvation = -46.118723 kcal Electronic energy + Delta-G solvation = -26936.142812 eV Core-core repulsion = 23203.620051 eV Total energy + Delta-G solvation = -3732.522761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.85431 -40.56390 -39.41277 -38.38084 -35.97845 -35.48940 -33.75201 -32.37169 -32.16239 -31.09335 -29.05566 -28.48374 -27.05275 -26.32401 -23.77691 -23.27806 -22.75390 -21.85646 -20.97684 -19.29254 -19.15700 -18.16172 -18.00634 -17.51005 -16.94997 -16.54569 -16.51301 -16.10746 -15.62160 -15.57904 -15.23910 -15.11831 -14.74748 -14.59159 -14.50591 -14.43007 -13.87508 -13.76032 -13.40859 -13.16406 -13.11104 -12.94156 -12.74267 -12.69325 -12.50897 -12.38601 -12.18149 -11.96043 -11.93162 -11.50955 -11.39254 -11.31371 -10.96748 -10.58442 -9.55060 -9.39874 -9.29796 -8.85273 -8.64765 -6.47000 0.26024 0.41488 0.78909 0.90480 1.26451 1.39998 1.48984 1.70380 2.10935 2.13278 2.34325 2.66187 2.80970 3.51637 3.80778 3.90924 3.99888 4.17315 4.24959 4.25367 4.37182 4.37312 4.41670 4.43235 4.55997 4.60693 4.70087 4.73159 4.78615 4.86075 4.87668 4.90840 4.96112 5.07621 5.15412 5.16919 5.33720 5.36669 5.56928 5.64949 5.66343 5.85778 5.87872 5.93696 6.04764 6.28117 6.41449 6.44347 6.51247 6.79123 6.89241 7.24093 8.22698 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.003499 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.364506 B = 8001.298164 C = 8763.648997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.089 3.911 4 C -0.187 4.187 5 C -0.075 4.075 6 C -0.107 4.107 7 C -0.144 4.144 8 C -0.127 4.127 9 C 0.097 3.903 10 N -0.660 5.660 11 C 0.515 3.485 12 O -0.546 6.546 13 C -0.071 4.071 14 C -0.172 4.172 15 C -0.076 4.076 16 C -0.228 4.228 17 C -0.090 4.090 18 C -0.256 4.256 19 C 0.084 3.916 20 C -0.467 4.467 21 H 0.054 0.946 22 C 0.043 3.957 23 N -0.858 5.858 24 Si 0.969 3.031 25 H -0.270 1.270 26 H -0.282 1.282 27 H -0.243 1.243 28 H 0.118 0.882 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.422 0.578 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.122 0.878 43 H 0.089 0.911 44 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.734 5.079 -12.996 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.251 6.251 3 C 0.041 3.959 4 C -0.206 4.206 5 C -0.076 4.076 6 C -0.164 4.164 7 C -0.163 4.163 8 C -0.147 4.147 9 C 0.002 3.998 10 N -0.304 5.304 11 C 0.305 3.695 12 O -0.423 6.423 13 C -0.111 4.111 14 C -0.174 4.174 15 C -0.094 4.094 16 C -0.247 4.247 17 C -0.108 4.108 18 C -0.275 4.275 19 C 0.082 3.918 20 C -0.497 4.497 21 H 0.072 0.928 22 C -0.170 4.170 23 N -0.485 5.485 24 Si 0.794 3.206 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.167 1.167 28 H 0.136 0.864 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.178 0.822 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.259 0.741 38 H 0.115 0.885 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.140 0.860 43 H 0.107 0.893 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.416 5.464 -12.449 17.753 hybrid contribution 0.159 -0.611 0.827 1.041 sum -11.257 4.853 -11.622 16.892 Atomic orbital electron populations 1.23346 0.76046 1.05598 1.02348 1.85987 1.23810 1.26077 1.89196 1.18732 0.89775 0.86139 1.01204 1.21208 1.00911 0.90519 1.07972 1.20074 0.93577 0.96028 0.97930 1.20812 0.99404 0.92986 1.03155 1.21118 0.93829 0.98012 1.03295 1.21556 1.01879 0.90941 1.00355 1.17506 0.88048 0.87554 1.06724 1.43398 1.10888 1.10549 1.65606 1.21410 0.81694 0.91134 0.75305 1.90571 1.73650 1.34248 1.43877 1.20343 0.92081 0.94647 1.03982 1.19444 0.94741 1.10633 0.92578 1.20898 0.93045 0.96719 0.98705 1.20872 0.97341 1.11332 0.95107 1.20963 0.98095 0.97768 0.93965 1.21075 0.95806 1.12668 0.97979 1.17713 0.91936 0.89597 0.92602 1.19376 0.94760 1.33867 1.01655 0.92796 1.26838 1.02422 0.94177 0.93587 1.69711 1.38391 1.34853 1.05531 0.85459 0.78095 0.77179 0.79900 1.19630 1.20955 1.16651 0.86391 0.92115 0.90931 0.82238 0.90479 0.90464 0.89803 0.84394 0.84664 0.74056 0.88548 0.85588 0.85417 0.85248 0.85993 0.89310 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -8.59 9.85 -93.35 -0.92 -9.51 16 3 C 0.09 2.57 6.70 22.60 0.15 2.72 16 4 C -0.19 -4.37 8.69 22.35 0.19 -4.18 16 5 C -0.08 -1.76 5.88 -19.85 -0.12 -1.88 16 6 C -0.11 -1.61 10.01 71.23 0.71 -0.89 16 7 C -0.14 -4.11 9.69 22.27 0.22 -3.90 16 8 C -0.13 -4.53 8.79 22.38 0.20 -4.34 16 9 C 0.10 3.37 6.52 38.19 0.25 3.62 16 10 N -0.66 -22.95 5.33 -303.13 -1.62 -24.56 16 11 C 0.51 21.24 7.28 87.65 0.64 21.88 16 12 O -0.55 -27.06 12.92 -3.09 -0.04 -27.10 16 13 C -0.07 -2.73 5.19 29.10 0.15 -2.58 16 14 C -0.17 -7.85 4.43 -19.41 -0.09 -7.94 16 15 C -0.08 -3.04 9.66 22.22 0.21 -2.83 16 16 C -0.23 -8.98 10.05 22.46 0.23 -8.76 16 17 C -0.09 -3.87 10.02 22.22 0.22 -3.65 16 18 C -0.26 -12.84 6.89 22.73 0.16 -12.68 16 19 C 0.08 4.42 5.19 -21.29 -0.11 4.31 16 20 C -0.47 -26.85 8.63 23.46 0.20 -26.64 16 21 H 0.05 3.36 6.94 -2.91 -0.02 3.34 16 22 C 0.04 2.38 5.47 85.25 0.47 2.85 16 23 N -0.86 -49.02 13.93 21.83 0.30 -48.72 16 24 Si 0.97 44.81 24.36 68.60 1.67 46.48 16 25 H -0.27 -12.17 6.78 99.48 0.67 -11.49 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.24 -11.22 6.44 99.48 0.64 -10.58 16 28 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 30 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 31 H 0.16 2.57 6.30 -2.91 -0.02 2.55 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 34 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 35 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 36 H 0.14 5.57 5.40 -2.91 -0.02 5.55 16 37 H 0.42 12.19 8.25 -92.71 -0.76 11.42 16 38 H 0.10 3.84 7.13 -2.39 -0.02 3.83 16 39 H 0.13 3.64 8.05 -2.38 -0.02 3.62 16 40 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 42 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 43 H 0.09 4.49 4.19 -2.91 -0.01 4.47 16 44 H 0.29 15.01 8.30 -92.71 -0.77 14.24 16 Total: -1.00 -73.89 360.19 4.37 -69.52 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: 0.18 Total: 37.35 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 4.80 Total: -43.46 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.31 Total: -73.28 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.96 Total: -36.61 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.67 Total: 46.48 kcal Total: -73.89 4.37 -69.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776833165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.399 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds