Wall clock time and date at job start Tue Mar 31 2020 13:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38211 * 119.95689 * 2 1 4 4 C 1.38129 * 120.12367 * 180.02562 * 3 2 1 5 5 C 1.38922 * 120.03965 * 0.28339 * 4 3 2 6 6 N 1.39923 * 120.04162 * 179.74639 * 5 4 3 7 7 C 1.34771 * 120.00001 * 19.90693 * 6 5 4 8 8 O 1.21281 * 120.00375 * 5.54010 * 7 6 5 9 9 C 1.50706 * 119.99699 * 185.53718 * 7 6 5 10 10 C 1.50709 * 109.46732 * 180.02562 * 9 7 6 11 11 C 1.37641 * 120.12699 * 264.99684 * 10 9 7 12 12 C 1.38607 * 120.24815 * 179.97438 * 11 10 9 13 13 C 1.38660 * 120.50374 * 0.02749 * 12 11 10 14 14 C 1.37599 * 120.24545 * 0.02562 * 13 12 11 15 15 C 1.40694 * 120.12547 * 84.72796 * 10 9 7 16 16 C 1.41387 * 120.24749 * 359.97438 * 15 10 9 17 17 H 1.08003 * 119.99797 * 331.01197 * 16 15 10 18 18 C 1.39943 * 120.00612 * 151.01443 * 16 15 10 19 19 N 1.30823 * 119.99454 * 348.57708 * 18 16 15 20 20 Si 1.86795 * 120.00577 * 168.57793 * 18 16 15 21 21 H 1.48498 * 109.47232 * 59.99701 * 20 18 16 22 22 H 1.48497 * 109.47724 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47226 * 299.99936 * 20 18 16 24 24 C 1.38761 * 119.91605 * 359.48645 * 5 4 3 25 25 C 1.50697 * 120.06250 * 180.28207 * 24 5 4 26 26 C 1.38622 * 119.87375 * 0.49007 * 24 5 4 27 27 O 1.35905 * 120.02036 * 179.74767 * 26 24 5 28 28 H 1.08998 * 109.47596 * 89.99719 * 1 2 3 29 29 H 1.09005 * 109.47019 * 209.99758 * 1 2 3 30 30 H 1.08997 * 109.47128 * 329.99295 * 1 2 3 31 31 H 1.08001 * 119.93981 * 0.02771 * 3 2 1 32 32 H 1.08000 * 119.97807 * 180.02562 * 4 3 2 33 33 H 0.97001 * 119.99804 * 199.91391 * 6 5 4 34 34 H 1.08995 * 109.47426 * 299.99820 * 9 7 6 35 35 H 1.09001 * 109.47005 * 60.00855 * 9 7 6 36 36 H 1.08001 * 119.87497 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.74909 * 180.02562 * 12 11 10 38 38 H 1.07994 * 119.87706 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.12668 * 179.97438 * 14 13 12 40 40 H 0.97005 * 120.00165 * 180.02562 * 19 18 16 41 41 H 1.09007 * 109.47264 * 270.20549 * 25 24 5 42 42 H 1.08997 * 109.47605 * 30.20384 * 25 24 5 43 43 H 1.09000 * 109.47545 * 150.21562 * 25 24 5 44 44 H 0.96699 * 113.99569 * 270.02056 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1975 0.0000 4 6 3.5784 1.2015 -0.0005 5 6 4.2774 0.0009 -0.0070 6 7 5.6766 0.0050 -0.0129 7 6 6.3489 1.1031 0.3849 8 8 5.7460 2.0508 0.8424 9 6 7.8501 1.1535 0.2613 10 6 8.3519 2.4795 0.7722 11 6 8.5744 3.5179 -0.1034 12 6 9.0354 4.7387 0.3638 13 6 9.2782 4.9287 1.7157 14 6 9.0638 3.9043 2.6091 15 6 8.5894 2.6625 2.1468 16 6 8.3585 1.6051 3.0565 17 1 7.6052 0.8619 2.8406 18 6 9.1059 1.5213 4.2366 19 7 10.1607 2.2782 4.3978 20 14 8.5977 0.3288 5.5816 21 1 8.6147 -1.0566 5.0471 22 1 9.5461 0.4325 6.7195 23 1 7.2279 0.6628 6.0476 24 6 3.5862 -1.2023 -0.0022 25 6 4.3410 -2.5066 -0.0028 26 6 2.1999 -1.2022 -0.0012 27 8 1.5200 -2.3790 -0.0016 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6554 2.1318 0.0005 32 1 4.1153 2.1386 -0.0001 33 1 6.1626 -0.7826 -0.3034 34 1 8.2903 0.3480 0.8489 35 1 8.1326 1.0364 -0.7850 36 1 8.3882 3.3812 -1.1585 37 1 9.2068 5.5481 -0.3304 38 1 9.6377 5.8839 2.0687 39 1 9.2540 4.0543 3.6616 40 1 10.6791 2.2200 5.2157 41 1 4.5223 -2.8211 -1.0306 42 1 5.2937 -2.3753 0.5103 43 1 3.7532 -3.2669 0.5113 44 1 1.3228 -2.7189 -0.8852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777415076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:06 Heat of formation + Delta-G solvation = -41.077982 kcal Electronic energy + Delta-G solvation = -26950.926727 eV Core-core repulsion = 23218.622549 eV Total energy + Delta-G solvation = -3732.304178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.63604 -39.19802 -37.54767 -36.49022 -34.84270 -33.61388 -32.45694 -31.76332 -30.67320 -29.46480 -27.37738 -26.99330 -25.74527 -24.86586 -22.49918 -21.14708 -20.93175 -20.35814 -19.45126 -18.38148 -17.35595 -17.08391 -16.26126 -15.61396 -15.42133 -15.19564 -14.75403 -14.51345 -14.43252 -13.73971 -13.63196 -13.46482 -13.34345 -13.25042 -13.11196 -12.72387 -12.58502 -12.08568 -12.04107 -11.84792 -11.72907 -11.56993 -11.44511 -11.19524 -11.06616 -11.00394 -10.70872 -10.55946 -10.40306 -10.05525 -9.52036 -9.39926 -9.19890 -9.13082 -8.48166 -7.72039 -7.34551 -7.28374 -6.70921 -4.37959 1.32493 1.34013 2.76609 2.92810 3.06443 3.06629 3.10631 3.26047 3.42125 3.77181 3.94372 4.24262 4.66871 4.75423 4.89084 5.06660 5.21190 5.32600 5.47752 5.52443 5.53060 5.59131 5.69409 5.73963 5.85142 5.91903 5.97236 6.05214 6.11191 6.24428 6.36173 6.37293 6.44796 6.49003 6.57107 6.67281 6.76571 7.07997 7.09766 7.27154 7.39942 7.57428 7.61987 7.71802 7.89202 8.05077 8.10369 8.29601 8.58029 8.64541 8.90474 8.99086 10.22783 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.003695 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.688028 B = 7576.440328 C = 8723.881766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.139 4.139 3 C -0.089 4.089 4 C -0.142 4.142 5 C 0.174 3.826 6 N -0.680 5.680 7 C 0.513 3.487 8 O -0.493 6.493 9 C -0.069 4.069 10 C -0.183 4.183 11 C -0.082 4.082 12 C -0.236 4.236 13 C -0.108 4.108 14 C -0.154 4.154 15 C 0.130 3.870 16 C -0.458 4.458 17 H 0.072 0.928 18 C 0.076 3.924 19 N -0.800 5.800 20 Si 0.904 3.096 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.152 4.152 25 C -0.110 4.110 26 C 0.119 3.881 27 O -0.493 6.493 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.126 0.874 32 H 0.159 0.841 33 H 0.408 0.592 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.280 0.720 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.383 -8.744 -9.728 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.141 4.141 3 C -0.108 4.108 4 C -0.162 4.162 5 C 0.078 3.922 6 N -0.324 5.324 7 C 0.302 3.698 8 O -0.366 6.366 9 C -0.109 4.109 10 C -0.185 4.185 11 C -0.100 4.100 12 C -0.255 4.255 13 C -0.126 4.126 14 C -0.173 4.173 15 C 0.128 3.872 16 C -0.488 4.488 17 H 0.090 0.910 18 C -0.140 4.140 19 N -0.426 5.426 20 Si 0.729 3.271 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.156 4.156 25 C -0.166 4.166 26 C 0.074 3.926 27 O -0.302 6.302 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.144 0.856 32 H 0.176 0.824 33 H 0.243 0.757 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.137 0.863 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -11.474 -7.914 -8.597 16.376 hybrid contribution 0.068 -0.986 0.090 0.993 sum -11.405 -8.900 -8.507 16.783 Atomic orbital electron populations 1.20599 0.91043 1.02834 1.01709 1.20090 0.96438 0.92504 1.05042 1.20854 0.93706 0.97029 0.99190 1.21776 0.94083 0.98981 1.01338 1.17573 0.83225 0.93131 0.98287 1.43928 1.04157 1.18144 1.66207 1.21578 0.91253 0.81190 0.75745 1.90597 1.69434 1.35869 1.40657 1.20293 0.88847 1.00240 1.01513 1.19036 1.12344 0.93303 0.93798 1.20302 0.99594 0.93500 0.96621 1.20326 1.12802 0.97169 0.95216 1.20708 1.00648 0.97589 0.93698 1.21350 1.04468 0.92334 0.99138 1.17332 0.87829 0.92013 0.90054 1.19426 1.17559 1.09519 1.02338 0.90980 1.25849 0.93577 0.95933 0.98683 1.69783 1.12223 1.34408 1.26207 0.86427 0.79630 0.80930 0.80107 1.19094 1.20280 1.18922 1.19766 0.93276 0.94515 1.08014 1.20581 0.99915 0.94213 1.01922 1.17691 0.88394 0.84695 1.01822 1.84776 1.76096 1.36337 1.32961 0.91880 0.91292 0.91756 0.85607 0.82372 0.75662 0.88182 0.90079 0.89696 0.89594 0.89508 0.86339 0.90928 0.91574 0.91624 0.90646 0.76159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.79 36.00 0.35 -0.67 16 2 C -0.14 -1.77 5.89 -104.44 -0.62 -2.38 16 3 C -0.09 -1.24 9.69 -39.63 -0.38 -1.62 16 4 C -0.14 -2.31 8.78 -39.37 -0.35 -2.66 16 5 C 0.17 2.69 6.48 -83.72 -0.54 2.15 16 6 N -0.68 -10.18 5.07 -9.88 -0.05 -10.23 16 7 C 0.51 9.66 7.27 -10.98 -0.08 9.58 16 8 O -0.49 -11.20 12.94 5.56 0.07 -11.13 16 9 C -0.07 -1.29 5.19 -29.03 -0.15 -1.44 16 10 C -0.18 -4.27 4.43 -103.91 -0.46 -4.73 16 11 C -0.08 -1.83 9.66 -39.66 -0.38 -2.22 16 12 C -0.24 -5.38 10.05 -39.29 -0.39 -5.77 16 13 C -0.11 -2.60 10.02 -39.66 -0.40 -2.99 16 14 C -0.15 -4.06 8.66 -38.87 -0.34 -4.40 16 15 C 0.13 3.42 5.55 -106.83 -0.59 2.83 16 16 C -0.46 -11.97 8.08 -37.75 -0.30 -12.27 16 17 H 0.07 1.84 6.75 -52.48 -0.35 1.49 16 18 C 0.08 1.92 5.24 -17.34 -0.09 1.83 16 19 N -0.80 -20.62 10.87 55.55 0.60 -20.02 16 20 Si 0.90 19.06 29.57 -169.99 -5.03 14.04 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 23 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 24 C -0.15 -2.03 5.91 -104.29 -0.62 -2.65 16 25 C -0.11 -1.15 9.22 36.00 0.33 -0.81 16 26 C 0.12 1.51 6.65 -39.24 -0.26 1.25 16 27 O -0.49 -5.13 11.59 -19.44 -0.23 -5.36 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.67 7.53 -51.93 -0.39 0.28 16 30 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.16 2.93 5.43 -52.49 -0.29 2.64 16 33 H 0.41 4.70 7.22 -40.82 -0.29 4.40 16 34 H 0.10 1.83 7.13 -51.93 -0.37 1.46 16 35 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 36 H 0.08 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 3.24 6.24 -52.49 -0.33 2.91 16 40 H 0.28 6.62 8.30 -40.82 -0.34 6.29 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.69 6.91 -51.93 -0.36 0.33 16 43 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 44 H 0.38 2.18 9.06 45.56 0.41 2.59 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -31.52 364.67 -9.27 -40.79 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -4.87 Total: 13.40 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -5.27 Total: -26.99 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.55 Total: -30.25 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.15 Total: -16.49 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.52 -9.27 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777415076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.285 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds