Wall clock time and date at job start Tue Mar 31 2020 13:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38211 * 119.95689 * 2 1 4 4 C 1.38129 * 120.12367 * 180.02562 * 3 2 1 5 5 C 1.38922 * 120.03965 * 0.28339 * 4 3 2 6 6 N 1.39923 * 120.04162 * 179.74639 * 5 4 3 7 7 C 1.34771 * 120.00001 * 19.90693 * 6 5 4 8 8 O 1.21281 * 120.00375 * 5.54010 * 7 6 5 9 9 C 1.50706 * 119.99699 * 185.53718 * 7 6 5 10 10 C 1.50709 * 109.46732 * 180.02562 * 9 7 6 11 11 C 1.37641 * 120.12699 * 264.99684 * 10 9 7 12 12 C 1.38607 * 120.24815 * 179.97438 * 11 10 9 13 13 C 1.38660 * 120.50374 * 0.02749 * 12 11 10 14 14 C 1.37599 * 120.24545 * 0.02562 * 13 12 11 15 15 C 1.40694 * 120.12547 * 84.72796 * 10 9 7 16 16 C 1.41387 * 120.24749 * 359.97438 * 15 10 9 17 17 H 1.08003 * 119.99797 * 331.01197 * 16 15 10 18 18 C 1.39943 * 120.00612 * 151.01443 * 16 15 10 19 19 N 1.30823 * 119.99454 * 348.57708 * 18 16 15 20 20 Si 1.86795 * 120.00577 * 168.57793 * 18 16 15 21 21 H 1.48498 * 109.47232 * 59.99701 * 20 18 16 22 22 H 1.48497 * 109.47724 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47226 * 299.99936 * 20 18 16 24 24 C 1.38761 * 119.91605 * 359.48645 * 5 4 3 25 25 C 1.50697 * 120.06250 * 180.28207 * 24 5 4 26 26 C 1.38622 * 119.87375 * 0.49007 * 24 5 4 27 27 O 1.35905 * 120.02036 * 179.74767 * 26 24 5 28 28 H 1.08998 * 109.47596 * 89.99719 * 1 2 3 29 29 H 1.09005 * 109.47019 * 209.99758 * 1 2 3 30 30 H 1.08997 * 109.47128 * 329.99295 * 1 2 3 31 31 H 1.08001 * 119.93981 * 0.02771 * 3 2 1 32 32 H 1.08000 * 119.97807 * 180.02562 * 4 3 2 33 33 H 0.97001 * 119.99804 * 199.91391 * 6 5 4 34 34 H 1.08995 * 109.47426 * 299.99820 * 9 7 6 35 35 H 1.09001 * 109.47005 * 60.00855 * 9 7 6 36 36 H 1.08001 * 119.87497 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.74909 * 180.02562 * 12 11 10 38 38 H 1.07994 * 119.87706 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.12668 * 179.97438 * 14 13 12 40 40 H 0.97005 * 120.00165 * 180.02562 * 19 18 16 41 41 H 1.09007 * 109.47264 * 270.20549 * 25 24 5 42 42 H 1.08997 * 109.47605 * 30.20384 * 25 24 5 43 43 H 1.09000 * 109.47545 * 150.21562 * 25 24 5 44 44 H 0.96699 * 113.99569 * 270.02056 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1975 0.0000 4 6 3.5784 1.2015 -0.0005 5 6 4.2774 0.0009 -0.0070 6 7 5.6766 0.0050 -0.0129 7 6 6.3489 1.1031 0.3849 8 8 5.7460 2.0508 0.8424 9 6 7.8501 1.1535 0.2613 10 6 8.3519 2.4795 0.7722 11 6 8.5744 3.5179 -0.1034 12 6 9.0354 4.7387 0.3638 13 6 9.2782 4.9287 1.7157 14 6 9.0638 3.9043 2.6091 15 6 8.5894 2.6625 2.1468 16 6 8.3585 1.6051 3.0565 17 1 7.6052 0.8619 2.8406 18 6 9.1059 1.5213 4.2366 19 7 10.1607 2.2782 4.3978 20 14 8.5977 0.3288 5.5816 21 1 8.6147 -1.0566 5.0471 22 1 9.5461 0.4325 6.7195 23 1 7.2279 0.6628 6.0476 24 6 3.5862 -1.2023 -0.0022 25 6 4.3410 -2.5066 -0.0028 26 6 2.1999 -1.2022 -0.0012 27 8 1.5200 -2.3790 -0.0016 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6554 2.1318 0.0005 32 1 4.1153 2.1386 -0.0001 33 1 6.1626 -0.7826 -0.3034 34 1 8.2903 0.3480 0.8489 35 1 8.1326 1.0364 -0.7850 36 1 8.3882 3.3812 -1.1585 37 1 9.2068 5.5481 -0.3304 38 1 9.6377 5.8839 2.0687 39 1 9.2540 4.0543 3.6616 40 1 10.6791 2.2200 5.2157 41 1 4.5223 -2.8211 -1.0306 42 1 5.2937 -2.3753 0.5103 43 1 3.7532 -3.2669 0.5113 44 1 1.3228 -2.7189 -0.8852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777415076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:05 Heat of formation + Delta-G solvation = -59.778700 kcal Electronic energy + Delta-G solvation = -26951.737651 eV Core-core repulsion = 23218.622549 eV Total energy + Delta-G solvation = -3733.115102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83100 -40.44332 -39.22628 -37.59146 -35.99285 -35.48895 -33.75694 -33.16924 -31.72227 -31.33338 -28.89603 -27.89827 -27.20783 -26.42941 -23.66779 -22.81829 -22.38392 -21.52846 -21.04066 -19.43947 -19.06893 -18.49111 -17.45005 -17.17879 -16.71429 -16.55323 -16.20908 -15.80768 -15.70121 -15.35699 -15.09762 -14.92745 -14.44490 -14.37783 -14.15191 -14.04043 -13.63295 -13.57193 -13.36904 -13.08224 -12.91373 -12.86097 -12.82761 -12.78550 -12.62595 -12.50160 -12.38466 -12.12316 -11.48608 -11.34028 -11.25301 -11.21281 -11.06636 -10.57322 -9.50079 -9.20747 -9.16761 -8.83749 -8.57119 -6.32706 0.23744 0.30300 0.97676 1.12301 1.34426 1.44069 1.51475 1.69377 2.13637 2.18866 2.70145 2.79626 3.35197 3.67462 3.83083 3.96178 4.00154 4.14517 4.28370 4.38215 4.41428 4.57538 4.59627 4.65993 4.70536 4.76521 4.77862 4.80488 4.85608 4.91808 5.04714 5.11000 5.19094 5.25234 5.36151 5.36549 5.40484 5.52291 5.54012 5.60646 5.77096 6.00505 6.02548 6.15602 6.20612 6.41164 6.49710 6.73483 6.89263 6.98664 7.10088 7.23800 8.38567 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.003695 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.688028 B = 7576.440328 C = 8723.881766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.139 4.139 3 C -0.098 4.098 4 C -0.168 4.168 5 C 0.149 3.851 6 N -0.662 5.662 7 C 0.515 3.485 8 O -0.542 6.542 9 C -0.067 4.067 10 C -0.185 4.185 11 C -0.091 4.091 12 C -0.237 4.237 13 C -0.119 4.119 14 C -0.189 4.189 15 C 0.097 3.903 16 C -0.484 4.484 17 H 0.068 0.932 18 C 0.037 3.963 19 N -0.831 5.831 20 Si 0.968 3.032 21 H -0.253 1.253 22 H -0.266 1.266 23 H -0.274 1.274 24 C -0.151 4.151 25 C -0.108 4.108 26 C 0.121 3.879 27 O -0.493 6.493 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.424 0.576 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.285 0.715 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.770 -11.056 -11.347 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.140 4.140 3 C -0.116 4.116 4 C -0.188 4.188 5 C 0.054 3.946 6 N -0.307 5.307 7 C 0.305 3.695 8 O -0.418 6.418 9 C -0.107 4.107 10 C -0.187 4.187 11 C -0.109 4.109 12 C -0.256 4.256 13 C -0.137 4.137 14 C -0.208 4.208 15 C 0.095 3.905 16 C -0.514 4.514 17 H 0.087 0.913 18 C -0.177 4.177 19 N -0.458 5.458 20 Si 0.790 3.210 21 H -0.177 1.177 22 H -0.190 1.190 23 H -0.200 1.200 24 C -0.155 4.155 25 C -0.164 4.164 26 C 0.075 3.925 27 O -0.305 6.305 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.263 0.737 34 H 0.120 0.880 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -12.864 -10.277 -10.266 19.404 hybrid contribution 0.386 -0.261 0.452 0.649 sum -12.479 -10.538 -9.814 19.055 Atomic orbital electron populations 1.20644 0.88762 1.03256 1.03181 1.20440 0.98113 0.91995 1.03500 1.21013 0.92931 0.98395 0.99298 1.21659 0.95245 0.98404 1.03486 1.17695 0.83107 0.93740 1.00082 1.43585 1.04339 1.17622 1.65202 1.21460 0.91199 0.81468 0.75343 1.90601 1.70230 1.37838 1.43087 1.20313 0.88830 0.97862 1.03672 1.19514 1.10622 0.95596 0.92979 1.20753 0.98731 0.93086 0.98337 1.20746 1.11473 0.98345 0.95066 1.20971 1.00550 0.97834 0.94336 1.21349 1.07045 0.93755 0.98681 1.17708 0.88846 0.92124 0.91795 1.19567 1.18215 1.09971 1.03687 0.91348 1.26592 0.93243 0.97502 1.00360 1.69855 1.13130 1.35845 1.26985 0.85457 0.78639 0.79317 0.77580 1.17679 1.19041 1.19951 1.20057 0.93881 0.94817 1.06728 1.20649 0.99414 0.92666 1.03689 1.17783 0.88366 0.85515 1.00791 1.84723 1.75560 1.35189 1.35067 0.89775 0.90935 0.91259 0.84404 0.85291 0.73676 0.87955 0.86134 0.86297 0.86590 0.87712 0.88530 0.90463 0.88880 0.91799 0.90227 0.73376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 9.79 71.24 0.70 -1.01 16 2 C -0.14 -3.27 5.89 -19.75 -0.12 -3.39 16 3 C -0.10 -2.69 9.69 22.24 0.22 -2.47 16 4 C -0.17 -5.61 8.78 22.41 0.20 -5.41 16 5 C 0.15 4.54 6.48 38.14 0.25 4.79 16 6 N -0.66 -19.36 5.07 -303.56 -1.54 -20.90 16 7 C 0.52 19.49 7.27 87.66 0.64 20.13 16 8 O -0.54 -25.53 12.94 -3.03 -0.04 -25.57 16 9 C -0.07 -2.47 5.19 29.11 0.15 -2.32 16 10 C -0.19 -8.69 4.43 -19.40 -0.09 -8.78 16 11 C -0.09 -3.98 9.66 22.22 0.21 -3.77 16 12 C -0.24 -10.61 10.05 22.46 0.23 -10.39 16 13 C -0.12 -5.81 10.02 22.22 0.22 -5.58 16 14 C -0.19 -10.44 8.66 22.73 0.20 -10.24 16 15 C 0.10 5.30 5.55 -21.29 -0.12 5.18 16 16 C -0.48 -26.19 8.08 23.46 0.19 -26.00 16 17 H 0.07 3.61 6.75 -2.91 -0.02 3.59 16 18 C 0.04 1.89 5.24 85.26 0.45 2.34 16 19 N -0.83 -44.43 10.87 21.83 0.24 -44.19 16 20 Si 0.97 39.79 29.57 68.60 2.03 41.82 16 21 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 22 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 C -0.15 -3.75 5.91 -19.65 -0.12 -3.87 16 25 C -0.11 -1.94 9.22 71.23 0.66 -1.28 16 26 C 0.12 2.79 6.65 22.49 0.15 2.94 16 27 O -0.49 -8.58 11.59 -92.48 -1.07 -9.65 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.19 7.53 -2.38 -0.02 1.17 16 30 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 31 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.13 5.09 5.43 -2.91 -0.02 5.07 16 33 H 0.42 9.05 7.22 -92.71 -0.67 8.38 16 34 H 0.10 3.71 7.13 -2.39 -0.02 3.69 16 35 H 0.12 3.38 8.05 -2.39 -0.02 3.36 16 36 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 39 H 0.10 5.63 6.24 -2.91 -0.02 5.61 16 40 H 0.28 13.92 8.30 -92.70 -0.77 13.15 16 41 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.06 1.18 6.91 -2.39 -0.02 1.16 16 43 H 0.08 1.40 7.53 -2.39 -0.02 1.38 16 44 H 0.41 2.99 9.06 -74.06 -0.67 2.32 16 Total: -1.00 -71.83 364.67 3.34 -68.48 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: -0.28 Total: 39.15 kcal Atomic # 6 Polarization: -53.15 SS G_CDS: 4.01 Total: -49.13 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -1.30 Total: -65.10 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -1.11 Total: -35.22 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -71.83 3.34 -68.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777415076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.704 kcal (2) G-P(sol) polarization free energy of solvation -71.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds