Wall clock time and date at job start Tue Mar 31 2020 14:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46931 * 2 1 4 4 C 1.38278 * 119.91711 * 90.00442 * 3 2 1 5 5 C 1.38248 * 120.18114 * 180.02562 * 4 3 2 6 6 C 1.38550 * 120.00998 * 0.02562 * 5 4 3 7 7 O 1.35976 * 120.07870 * 179.97438 * 6 5 4 8 8 C 1.39294 * 119.83768 * 359.97438 * 6 5 4 9 9 N 1.40133 * 120.08698 * 180.02562 * 8 6 5 10 10 C 1.34782 * 119.99616 * 208.04609 * 9 8 6 11 11 O 1.21287 * 120.00077 * 355.52142 * 10 9 8 12 12 C 1.50697 * 119.99697 * 175.52169 * 10 9 8 13 13 C 1.50691 * 109.47308 * 179.97438 * 12 10 9 14 14 C 1.37646 * 120.12803 * 265.00209 * 13 12 10 15 15 C 1.38619 * 120.24747 * 180.29401 * 14 13 12 16 16 C 1.38655 * 120.49953 * 359.44409 * 15 14 13 17 17 C 1.37600 * 120.24906 * 0.55460 * 16 15 14 18 18 C 1.40697 * 120.13052 * 85.02030 * 13 12 10 19 19 C 1.41398 * 120.24317 * 359.95668 * 18 13 12 20 20 H 1.08001 * 119.99731 * 331.43798 * 19 18 13 21 21 C 1.39942 * 120.00184 * 151.43444 * 19 18 13 22 22 N 1.30826 * 119.99937 * 348.11249 * 21 19 18 23 23 Si 1.86800 * 120.00215 * 168.11479 * 21 19 18 24 24 H 1.48503 * 109.47062 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46988 * 119.99747 * 23 21 19 26 26 H 1.48493 * 109.47188 * 239.99843 * 23 21 19 27 27 C 1.38196 * 119.91665 * 270.27393 * 3 2 1 28 28 H 1.08997 * 109.46968 * 299.99548 * 1 2 3 29 29 H 1.08994 * 109.47256 * 60.00046 * 1 2 3 30 30 H 1.08999 * 109.47227 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46968 * 240.00452 * 2 1 3 32 32 H 1.09000 * 109.46995 * 120.00279 * 2 1 3 33 33 H 1.08000 * 119.90705 * 0.02562 * 4 3 2 34 34 H 1.07991 * 119.99347 * 179.97438 * 5 4 3 35 35 H 0.96708 * 113.99870 * 270.02155 * 7 6 5 36 36 H 0.96993 * 120.00110 * 28.04950 * 9 8 6 37 37 H 1.09006 * 109.47282 * 59.99471 * 12 10 9 38 38 H 1.08996 * 109.47213 * 300.00045 * 12 10 9 39 39 H 1.07991 * 119.87646 * 0.02562 * 14 13 12 40 40 H 1.07994 * 119.74570 * 179.69988 * 15 14 13 41 41 H 1.08002 * 119.87689 * 180.29823 * 16 15 14 42 42 H 1.08001 * 120.12730 * 179.74481 * 17 16 15 43 43 H 0.96999 * 120.00241 * 180.02562 * 22 21 19 44 44 H 1.07994 * 120.01294 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0710 1.1985 5 6 2.7225 3.3746 1.2049 6 6 2.9542 4.0336 0.0083 7 8 3.4064 5.3159 0.0130 8 6 2.7228 3.3792 -1.1993 9 7 2.9559 4.0405 -2.4126 10 6 2.2533 3.7001 -3.5113 11 8 1.4781 2.7682 -3.4710 12 6 2.4311 4.4776 -4.7900 13 6 1.5390 3.8991 -5.8578 14 6 2.0343 2.9676 -6.7420 15 6 1.2175 2.4383 -7.7290 16 6 -0.1084 2.8309 -7.8306 17 6 -0.6249 3.7606 -6.9576 18 6 0.1966 4.3091 -5.9552 19 6 -0.3234 5.2648 -5.0521 20 1 0.0886 5.3478 -4.0572 21 6 -1.3718 6.1032 -5.4475 22 7 -1.7160 6.1702 -6.7079 23 14 -2.2798 7.1267 -4.1757 24 1 -1.7025 6.8718 -2.8314 25 1 -2.1416 8.5672 -4.5093 26 1 -3.7173 6.7544 -4.1753 27 6 2.2566 2.0726 -1.1978 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0818 1.5590 2.1322 34 1 2.9007 3.8796 2.1427 35 1 2.7041 5.9806 0.0151 36 1 3.6228 4.7430 -2.4617 37 1 3.4706 4.4147 -5.1120 38 1 2.1658 5.5211 -4.6206 39 1 3.0643 2.6513 -6.6691 40 1 1.6159 1.7117 -8.4215 41 1 -0.7371 2.4084 -8.6005 42 1 -1.6569 4.0680 -7.0411 43 1 -2.4425 6.7516 -6.9821 44 1 2.0724 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777428246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:58 Heat of formation + Delta-G solvation = -45.578492 kcal Electronic energy + Delta-G solvation = -27116.750108 eV Core-core repulsion = 23384.250773 eV Total energy + Delta-G solvation = -3732.499335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53731 -38.86689 -37.36810 -37.04885 -34.55498 -33.62260 -33.04642 -31.89050 -29.81480 -29.44719 -28.41261 -26.70953 -25.03536 -23.77718 -22.97536 -21.15129 -20.94021 -20.35827 -19.40737 -18.46098 -17.23964 -16.87696 -16.60831 -15.79839 -15.43747 -15.32253 -14.70291 -14.60167 -14.37498 -13.83077 -13.72240 -13.53833 -13.37633 -13.26990 -13.17733 -12.61185 -12.32820 -12.18962 -11.83546 -11.73762 -11.58321 -11.23377 -11.11086 -11.04900 -11.03041 -10.94221 -10.79644 -10.69519 -10.40024 -10.13212 -9.52130 -9.39456 -9.22572 -9.13854 -8.51316 -7.84214 -7.34627 -7.29104 -6.72446 -4.38520 1.24428 1.44367 2.74202 2.91244 3.05696 3.09971 3.10909 3.23419 3.46329 3.71662 3.92233 4.26261 4.65656 4.79642 4.86050 5.15618 5.28853 5.34238 5.41410 5.50163 5.61779 5.69913 5.75124 5.88679 5.93271 5.97920 6.01543 6.13410 6.24841 6.27945 6.28890 6.37702 6.40113 6.48447 6.57338 6.76054 6.76469 7.03862 7.07604 7.26721 7.39339 7.60469 7.63510 7.72969 7.89261 8.04551 8.10036 8.28974 8.60101 8.64902 8.89703 8.98454 10.21528 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.004183 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.260813 B = 6692.000273 C = 7489.927988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.070 4.070 4 C -0.132 4.132 5 C -0.123 4.123 6 C 0.057 3.943 7 O -0.497 6.497 8 C 0.143 3.857 9 N -0.679 5.679 10 C 0.513 3.487 11 O -0.498 6.498 12 C -0.069 4.069 13 C -0.182 4.182 14 C -0.082 4.082 15 C -0.235 4.235 16 C -0.108 4.108 17 C -0.154 4.154 18 C 0.129 3.871 19 C -0.457 4.457 20 H 0.072 0.928 21 C 0.076 3.924 22 N -0.799 5.799 23 Si 0.904 3.096 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.272 1.272 27 C -0.120 4.120 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.386 0.614 36 H 0.411 0.589 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.279 0.721 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.748 -3.274 12.550 14.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.071 4.071 4 C -0.151 4.151 5 C -0.142 4.142 6 C 0.010 3.990 7 O -0.307 6.307 8 C 0.047 3.953 9 N -0.325 5.325 10 C 0.303 3.697 11 O -0.370 6.370 12 C -0.108 4.108 13 C -0.184 4.184 14 C -0.100 4.100 15 C -0.255 4.255 16 C -0.126 4.126 17 C -0.173 4.173 18 C 0.127 3.873 19 C -0.487 4.487 20 H 0.090 0.910 21 C -0.141 4.141 22 N -0.426 5.426 23 Si 0.729 3.271 24 H -0.187 1.187 25 H -0.200 1.200 26 H -0.197 1.197 27 C -0.140 4.140 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.241 0.759 36 H 0.247 0.753 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.136 0.864 43 H 0.090 0.910 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.547 -4.044 12.310 14.518 hybrid contribution -0.616 1.282 0.521 1.515 sum 5.931 -2.762 12.832 14.404 Atomic orbital electron populations 1.21752 0.94561 1.01603 1.02607 1.20508 0.96399 0.92369 1.02600 1.19857 0.98291 0.96406 0.92557 1.20800 1.02085 0.94614 0.97574 1.21100 1.00481 0.95692 0.96927 1.18124 1.04095 0.85661 0.91079 1.84806 1.36141 1.13346 1.96363 1.18251 0.99507 0.92323 0.85235 1.43808 1.41197 1.39682 1.07779 1.21576 0.78827 0.84632 0.84711 1.90617 1.34751 1.28074 1.83583 1.20280 0.99825 1.00409 0.90326 1.19044 0.94300 1.05273 0.99756 1.20309 0.97169 0.96719 0.95826 1.20329 0.95314 1.06840 1.02989 1.20706 0.94902 0.98325 0.98704 1.21332 1.00107 0.97753 0.98098 1.17345 0.89232 0.89585 0.91153 1.19474 1.14563 1.15065 0.99600 0.90953 1.25856 0.95982 0.96775 0.95496 1.69801 1.24570 1.32269 1.15920 0.86329 0.79865 0.79314 0.81621 1.18679 1.19970 1.19741 1.21481 1.00209 0.92505 0.99788 0.92778 0.91874 0.92529 0.90905 0.91252 0.86034 0.85514 0.75851 0.75307 0.90184 0.88143 0.89689 0.89590 0.89517 0.86389 0.91047 0.82666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.89 37.16 0.37 -1.32 16 2 C -0.08 -0.93 6.06 -27.88 -0.17 -1.10 16 3 C -0.07 -0.95 5.13 -104.62 -0.54 -1.49 16 4 C -0.13 -1.57 9.69 -39.56 -0.38 -1.96 16 5 C -0.12 -1.49 9.98 -39.46 -0.39 -1.89 16 6 C 0.06 0.78 6.72 -39.07 -0.26 0.52 16 7 O -0.50 -5.85 12.96 -19.66 -0.25 -6.11 16 8 C 0.14 2.24 6.44 -83.49 -0.54 1.71 16 9 N -0.68 -10.48 5.26 -9.75 -0.05 -10.53 16 10 C 0.51 9.74 7.33 -10.98 -0.08 9.66 16 11 O -0.50 -11.25 13.06 5.55 0.07 -11.18 16 12 C -0.07 -1.30 5.19 -29.04 -0.15 -1.45 16 13 C -0.18 -4.26 4.43 -103.92 -0.46 -4.72 16 14 C -0.08 -1.84 9.66 -39.66 -0.38 -2.23 16 15 C -0.24 -5.37 10.05 -39.29 -0.39 -5.77 16 16 C -0.11 -2.59 10.02 -39.66 -0.40 -2.99 16 17 C -0.15 -4.05 8.66 -38.87 -0.34 -4.38 16 18 C 0.13 3.39 5.55 -106.82 -0.59 2.79 16 19 C -0.46 -11.83 8.09 -37.74 -0.31 -12.13 16 20 H 0.07 1.84 6.75 -52.49 -0.35 1.48 16 21 C 0.08 1.88 5.23 -17.34 -0.09 1.79 16 22 N -0.80 -20.47 10.89 55.55 0.61 -19.86 16 23 Si 0.90 18.74 29.58 -169.99 -5.03 13.71 16 24 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 27 C -0.12 -1.94 8.42 -39.42 -0.33 -2.27 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.39 3.21 9.07 45.56 0.41 3.63 16 36 H 0.41 5.17 8.41 -40.82 -0.34 4.83 16 37 H 0.08 1.25 8.05 -51.93 -0.42 0.84 16 38 H 0.10 1.87 7.11 -51.93 -0.37 1.50 16 39 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.12 3.21 6.25 -52.49 -0.33 2.88 16 43 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 44 H 0.16 2.86 5.67 -52.49 -0.30 2.56 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -30.62 370.11 -9.57 -40.19 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -5.05 Total: 15.43 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -5.44 Total: -27.22 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.55 Total: -30.39 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.18 Total: -17.29 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.62 -9.57 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777428246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.390 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds