Wall clock time and date at job start Tue Mar 31 2020 14:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46931 * 2 1 4 4 C 1.38278 * 119.91711 * 90.00442 * 3 2 1 5 5 C 1.38248 * 120.18114 * 180.02562 * 4 3 2 6 6 C 1.38550 * 120.00998 * 0.02562 * 5 4 3 7 7 O 1.35976 * 120.07870 * 179.97438 * 6 5 4 8 8 C 1.39294 * 119.83768 * 359.97438 * 6 5 4 9 9 N 1.40133 * 120.08698 * 180.02562 * 8 6 5 10 10 C 1.34782 * 119.99616 * 208.04609 * 9 8 6 11 11 O 1.21287 * 120.00077 * 355.52142 * 10 9 8 12 12 C 1.50697 * 119.99697 * 175.52169 * 10 9 8 13 13 C 1.50691 * 109.47308 * 179.97438 * 12 10 9 14 14 C 1.37646 * 120.12803 * 265.00209 * 13 12 10 15 15 C 1.38619 * 120.24747 * 180.29401 * 14 13 12 16 16 C 1.38655 * 120.49953 * 359.44409 * 15 14 13 17 17 C 1.37600 * 120.24906 * 0.55460 * 16 15 14 18 18 C 1.40697 * 120.13052 * 85.02030 * 13 12 10 19 19 C 1.41398 * 120.24317 * 359.95668 * 18 13 12 20 20 H 1.08001 * 119.99731 * 331.43798 * 19 18 13 21 21 C 1.39942 * 120.00184 * 151.43444 * 19 18 13 22 22 N 1.30826 * 119.99937 * 348.11249 * 21 19 18 23 23 Si 1.86800 * 120.00215 * 168.11479 * 21 19 18 24 24 H 1.48503 * 109.47062 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46988 * 119.99747 * 23 21 19 26 26 H 1.48493 * 109.47188 * 239.99843 * 23 21 19 27 27 C 1.38196 * 119.91665 * 270.27393 * 3 2 1 28 28 H 1.08997 * 109.46968 * 299.99548 * 1 2 3 29 29 H 1.08994 * 109.47256 * 60.00046 * 1 2 3 30 30 H 1.08999 * 109.47227 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46968 * 240.00452 * 2 1 3 32 32 H 1.09000 * 109.46995 * 120.00279 * 2 1 3 33 33 H 1.08000 * 119.90705 * 0.02562 * 4 3 2 34 34 H 1.07991 * 119.99347 * 179.97438 * 5 4 3 35 35 H 0.96708 * 113.99870 * 270.02155 * 7 6 5 36 36 H 0.96993 * 120.00110 * 28.04950 * 9 8 6 37 37 H 1.09006 * 109.47282 * 59.99471 * 12 10 9 38 38 H 1.08996 * 109.47213 * 300.00045 * 12 10 9 39 39 H 1.07991 * 119.87646 * 0.02562 * 14 13 12 40 40 H 1.07994 * 119.74570 * 179.69988 * 15 14 13 41 41 H 1.08002 * 119.87689 * 180.29823 * 16 15 14 42 42 H 1.08001 * 120.12730 * 179.74481 * 17 16 15 43 43 H 0.96999 * 120.00241 * 180.02562 * 22 21 19 44 44 H 1.07994 * 120.01294 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0710 1.1985 5 6 2.7225 3.3746 1.2049 6 6 2.9542 4.0336 0.0083 7 8 3.4064 5.3159 0.0130 8 6 2.7228 3.3792 -1.1993 9 7 2.9559 4.0405 -2.4126 10 6 2.2533 3.7001 -3.5113 11 8 1.4781 2.7682 -3.4710 12 6 2.4311 4.4776 -4.7900 13 6 1.5390 3.8991 -5.8578 14 6 2.0343 2.9676 -6.7420 15 6 1.2175 2.4383 -7.7290 16 6 -0.1084 2.8309 -7.8306 17 6 -0.6249 3.7606 -6.9576 18 6 0.1966 4.3091 -5.9552 19 6 -0.3234 5.2648 -5.0521 20 1 0.0886 5.3478 -4.0572 21 6 -1.3718 6.1032 -5.4475 22 7 -1.7160 6.1702 -6.7079 23 14 -2.2798 7.1267 -4.1757 24 1 -1.7025 6.8718 -2.8314 25 1 -2.1416 8.5672 -4.5093 26 1 -3.7173 6.7544 -4.1753 27 6 2.2566 2.0726 -1.1978 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0818 1.5590 2.1322 34 1 2.9007 3.8796 2.1427 35 1 2.7041 5.9806 0.0151 36 1 3.6228 4.7430 -2.4617 37 1 3.4706 4.4147 -5.1120 38 1 2.1658 5.5211 -4.6206 39 1 3.0643 2.6513 -6.6691 40 1 1.6159 1.7117 -8.4215 41 1 -0.7371 2.4084 -8.6005 42 1 -1.6569 4.0680 -7.0411 43 1 -2.4425 6.7516 -6.9821 44 1 2.0724 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777428246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:57 Heat of formation + Delta-G solvation = -63.532228 kcal Electronic energy + Delta-G solvation = -27117.528641 eV Core-core repulsion = 23384.250773 eV Total energy + Delta-G solvation = -3733.277868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76094 -40.21753 -39.07995 -38.01068 -35.84776 -35.49332 -34.04774 -33.52884 -31.38197 -30.96212 -29.49303 -28.30541 -26.87399 -24.77507 -24.13559 -22.82941 -22.35056 -21.67554 -21.00054 -19.49995 -19.07187 -18.11122 -17.91715 -17.28354 -16.82318 -16.44792 -16.24813 -16.12948 -15.58187 -15.28816 -15.20528 -14.89538 -14.68426 -14.39248 -14.36915 -14.31241 -13.58152 -13.39118 -13.33429 -13.19448 -12.92134 -12.90151 -12.77551 -12.60786 -12.50369 -12.12654 -11.99506 -11.88022 -11.80309 -11.35059 -11.33129 -11.22847 -11.07700 -10.57395 -9.57840 -9.21823 -9.17892 -8.96074 -8.57800 -6.32782 0.20385 0.37503 0.96243 1.10988 1.34280 1.47132 1.49605 1.70146 2.15379 2.18706 2.67777 2.78828 3.29665 3.67025 3.83738 3.93467 4.07375 4.21527 4.35121 4.36893 4.40854 4.50028 4.52314 4.58200 4.62522 4.69499 4.73322 4.77660 5.00262 5.02983 5.06312 5.11224 5.18773 5.26265 5.33839 5.35444 5.35623 5.50390 5.52948 5.72029 5.76213 5.97572 6.01886 6.14870 6.19731 6.40450 6.49064 6.72704 6.76845 6.98254 7.09230 7.24700 8.38440 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.004183 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.260813 B = 6692.000273 C = 7489.927988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.079 4.079 4 C -0.122 4.122 5 C -0.121 4.121 6 C 0.061 3.939 7 O -0.498 6.498 8 C 0.112 3.888 9 N -0.663 5.663 10 C 0.516 3.484 11 O -0.543 6.543 12 C -0.067 4.067 13 C -0.186 4.186 14 C -0.092 4.092 15 C -0.238 4.238 16 C -0.118 4.118 17 C -0.187 4.187 18 C 0.097 3.903 19 C -0.481 4.481 20 H 0.068 0.932 21 C 0.035 3.965 22 N -0.831 5.831 23 Si 0.972 3.028 24 H -0.263 1.263 25 H -0.260 1.260 26 H -0.271 1.271 27 C -0.144 4.144 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.403 0.597 36 H 0.424 0.576 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.285 0.715 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.162 -3.033 15.215 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.080 4.080 4 C -0.140 4.140 5 C -0.139 4.139 6 C 0.014 3.986 7 O -0.310 6.310 8 C 0.017 3.983 9 N -0.309 5.309 10 C 0.306 3.694 11 O -0.419 6.419 12 C -0.106 4.106 13 C -0.188 4.188 14 C -0.110 4.110 15 C -0.257 4.257 16 C -0.136 4.136 17 C -0.207 4.207 18 C 0.095 3.905 19 C -0.511 4.511 20 H 0.086 0.914 21 C -0.179 4.179 22 N -0.458 5.458 23 Si 0.793 3.207 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.196 1.196 27 C -0.164 4.164 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.174 0.826 34 H 0.175 0.825 35 H 0.261 0.739 36 H 0.263 0.737 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.995 -3.776 14.988 17.402 hybrid contribution -0.964 1.130 -0.286 1.513 sum 7.031 -2.646 14.702 16.510 Atomic orbital electron populations 1.21725 0.94750 1.02382 1.01358 1.20560 0.96136 0.91484 1.03581 1.20109 0.98156 0.97376 0.92328 1.21190 1.00213 0.94552 0.98075 1.21481 0.99244 0.95768 0.97436 1.18221 1.03307 0.86374 0.90734 1.84763 1.36993 1.12987 1.96252 1.18481 1.01424 0.92648 0.85777 1.43480 1.40694 1.39569 1.07161 1.21438 0.78568 0.83970 0.85459 1.90621 1.36878 1.30047 1.84383 1.20286 1.00925 0.99957 0.89445 1.19509 0.94000 1.04720 1.00564 1.20745 0.98789 0.96153 0.95278 1.20736 0.94770 1.06823 1.03335 1.20970 0.96041 0.97892 0.98737 1.21326 0.99593 0.99727 1.00046 1.17724 0.90721 0.90402 0.91675 1.19595 1.16045 1.16006 0.99487 0.91384 1.26637 0.96304 0.97673 0.97284 1.69870 1.25212 1.33194 1.17531 0.85312 0.78266 0.78232 0.78855 1.18662 1.18449 1.19568 1.21370 1.02017 0.93318 0.99730 0.91742 0.95298 0.90778 0.91926 0.88217 0.82632 0.82524 0.73926 0.73739 0.86550 0.88009 0.86501 0.86627 0.87670 0.88500 0.90476 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.89 71.98 0.71 -2.52 16 2 C -0.08 -1.74 6.06 29.85 0.18 -1.56 16 3 C -0.08 -2.06 5.13 -19.86 -0.10 -2.16 16 4 C -0.12 -2.53 9.69 22.28 0.22 -2.31 16 5 C -0.12 -2.53 9.98 22.35 0.22 -2.30 16 6 C 0.06 1.53 6.72 22.60 0.15 1.68 16 7 O -0.50 -10.47 12.96 -93.27 -1.21 -11.68 16 8 C 0.11 3.49 6.44 38.18 0.25 3.73 16 9 N -0.66 -20.34 5.26 -303.13 -1.59 -21.93 16 10 C 0.52 19.91 7.33 87.66 0.64 20.55 16 11 O -0.54 -25.72 13.06 -3.05 -0.04 -25.76 16 12 C -0.07 -2.51 5.19 29.10 0.15 -2.36 16 13 C -0.19 -8.83 4.43 -19.41 -0.09 -8.92 16 14 C -0.09 -4.07 9.66 22.22 0.21 -3.85 16 15 C -0.24 -10.71 10.05 22.46 0.23 -10.49 16 16 C -0.12 -5.79 10.02 22.22 0.22 -5.57 16 17 C -0.19 -10.34 8.66 22.73 0.20 -10.14 16 18 C 0.10 5.28 5.55 -21.29 -0.12 5.16 16 19 C -0.48 -25.87 8.09 23.46 0.19 -25.68 16 20 H 0.07 3.58 6.75 -2.91 -0.02 3.56 16 21 C 0.03 1.77 5.23 85.26 0.45 2.21 16 22 N -0.83 -44.13 10.89 21.83 0.24 -43.90 16 23 Si 0.97 39.11 29.58 68.60 2.03 41.14 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 25 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 26 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 27 C -0.14 -4.77 8.42 22.38 0.19 -4.58 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.46 8.09 -2.39 -0.02 1.44 16 32 H 0.10 1.55 8.08 -2.39 -0.02 1.53 16 33 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.16 2.35 8.06 -2.92 -0.02 2.32 16 35 H 0.40 5.67 9.07 -74.05 -0.67 5.00 16 36 H 0.42 10.24 8.41 -92.71 -0.78 9.46 16 37 H 0.12 3.44 8.05 -2.38 -0.02 3.42 16 38 H 0.10 3.80 7.11 -2.39 -0.02 3.78 16 39 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 40 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.10 5.62 6.25 -2.91 -0.02 5.60 16 43 H 0.28 13.73 8.30 -92.71 -0.77 12.96 16 44 H 0.12 4.88 5.67 -2.91 -0.02 4.86 16 Total: -1.00 -70.15 370.11 2.92 -67.23 By element: Atomic # 1 Polarization: 44.40 SS G_CDS: -0.40 Total: 44.00 kcal Atomic # 6 Polarization: -53.00 SS G_CDS: 3.90 Total: -49.10 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: -1.36 Total: -65.83 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.25 Total: -37.44 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -70.15 2.92 -67.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777428246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.699 kcal (2) G-P(sol) polarization free energy of solvation -70.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds