Wall clock time and date at job start Tue Mar 31 2020 14:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.46997 * 2 1 4 4 C 1.38266 * 120.00016 * 265.13443 * 3 2 1 5 5 C 1.38205 * 120.00173 * 180.27320 * 4 3 2 6 6 C 1.38259 * 119.99988 * 359.74881 * 5 4 3 7 7 C 1.38212 * 119.99766 * 359.97438 * 6 5 4 8 8 C 1.38211 * 120.00423 * 84.88074 * 3 2 1 9 9 S 1.76201 * 119.99790 * 0.02562 * 8 3 2 10 10 O 1.42109 * 106.39944 * 278.09215 * 9 8 3 11 11 O 1.42095 * 106.40489 * 51.01009 * 9 8 3 12 12 N 1.65597 * 107.21927 * 164.55639 * 9 8 3 13 13 C 1.46507 * 119.99532 * 264.31510 * 12 9 8 14 14 C 1.50698 * 109.47216 * 94.27872 * 13 12 9 15 15 H 1.07994 * 120.00049 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99946 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99843 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00135 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47474 * 89.99422 * 18 16 14 20 20 H 1.48500 * 109.47198 * 209.99809 * 18 16 14 21 21 H 1.48499 * 109.46931 * 329.99287 * 18 16 14 22 22 C 1.46495 * 120.00482 * 84.31126 * 12 9 8 23 23 C 1.53001 * 109.46971 * 93.83392 * 22 12 9 24 24 C 1.52998 * 109.47410 * 62.49435 * 23 22 12 25 25 C 1.53003 * 109.46945 * 182.49597 * 23 22 12 26 26 H 1.09003 * 109.47637 * 294.93882 * 1 2 3 27 27 H 1.09001 * 109.47490 * 54.94533 * 1 2 3 28 28 H 1.09009 * 109.46951 * 174.94545 * 1 2 3 29 29 H 1.09003 * 109.47332 * 239.99795 * 2 1 3 30 30 H 1.09004 * 109.47423 * 119.99185 * 2 1 3 31 31 H 1.08002 * 119.99363 * 0.04012 * 4 3 2 32 32 H 1.07998 * 120.00102 * 179.76825 * 5 4 3 33 33 H 1.07998 * 120.00395 * 179.97438 * 6 5 4 34 34 H 1.08006 * 119.99529 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46518 * 214.27422 * 13 12 9 36 36 H 1.09002 * 109.47272 * 334.27050 * 13 12 9 37 37 H 0.97001 * 119.99725 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.47267 * 213.83308 * 22 12 9 39 39 H 1.09002 * 109.46963 * 333.83632 * 22 12 9 40 40 H 1.09001 * 109.47353 * 302.49154 * 23 22 12 41 41 H 1.09008 * 109.46889 * 53.54487 * 24 23 22 42 42 H 1.08994 * 109.47274 * 173.54770 * 24 23 22 43 43 H 1.09001 * 109.47186 * 293.54970 * 24 23 22 44 44 H 1.08999 * 109.47357 * 59.99984 * 25 23 22 45 45 H 1.09001 * 109.47110 * 180.02562 * 25 23 22 46 46 H 1.08999 * 109.46918 * 299.99423 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3584 2.0388 -1.1931 5 6 2.8244 3.3399 -1.1927 6 6 2.9595 4.0254 0.0004 7 6 2.6281 3.4096 1.1925 8 6 2.1619 2.1081 1.1921 9 16 1.7405 1.3226 2.7121 10 8 0.3297 1.4318 2.8425 11 8 2.4283 0.0793 2.7255 12 7 2.3946 2.2321 3.9316 13 6 3.6972 1.8712 4.4968 14 6 4.7812 2.6517 3.7991 15 1 4.5255 3.3467 3.0130 16 6 6.0994 2.4777 4.1635 17 7 6.4108 1.6309 5.1205 18 14 7.4430 3.4457 3.2992 19 1 7.6720 4.7249 4.0178 20 1 8.6977 2.6514 3.2903 21 1 7.0275 3.7302 1.9022 22 6 1.6708 3.3976 4.4454 23 6 0.8367 2.9852 5.6599 24 6 1.7646 2.4949 6.7732 25 6 0.0328 4.1878 6.1586 26 1 -0.3634 0.4333 0.9318 27 1 -0.3634 0.5902 -0.8412 28 1 -0.3633 -1.0238 -0.0905 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 2.2526 1.5033 -2.1251 32 1 3.0828 3.8213 -2.1243 33 1 3.3241 5.0420 0.0009 34 1 2.7340 3.9450 2.1245 35 1 3.7087 2.1053 5.5613 36 1 3.8706 0.8041 4.3575 37 1 7.3383 1.5087 5.3771 38 1 2.3840 4.1678 4.7390 39 1 1.0132 3.7883 3.6687 40 1 0.1540 2.1840 5.3768 41 1 2.5201 3.2538 6.9771 42 1 1.1826 2.3098 7.6761 43 1 2.2522 1.5718 6.4597 44 1 -0.6283 4.5371 5.3655 45 1 -0.5611 3.8941 7.0241 46 1 0.7155 4.9889 6.4418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777928637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:15 Heat of formation + Delta-G solvation = -63.722983 kcal Electronic energy + Delta-G solvation = -27579.549421 eV Core-core repulsion = 23981.707233 eV Total energy + Delta-G solvation = -3597.842188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.20360 -37.27303 -36.53693 -35.42756 -34.06427 -33.57461 -32.14492 -30.98408 -29.25547 -27.72164 -26.69040 -24.98287 -23.93406 -22.95691 -22.27197 -20.94374 -20.00002 -18.41977 -17.19413 -16.85557 -16.34464 -15.78130 -15.69380 -15.20041 -14.54289 -14.49204 -14.39182 -13.93080 -13.69366 -13.57443 -13.33998 -13.06357 -12.61131 -12.39243 -12.29987 -12.09986 -11.94056 -11.81122 -11.71441 -11.56454 -11.49929 -11.27668 -11.22538 -11.16198 -10.89362 -10.85101 -10.63827 -10.57595 -10.25537 -10.17312 -10.10326 -9.91655 -9.69844 -9.05791 -8.59067 -8.47465 -8.05271 -6.11078 -4.16787 1.05577 1.15614 1.52294 3.24105 3.32013 3.33741 3.53967 3.73558 4.22331 4.36847 4.72812 4.91473 5.05055 5.14374 5.23076 5.24597 5.26342 5.31084 5.39395 5.43419 5.47325 5.58793 5.65114 5.67407 5.90769 5.96141 5.99673 6.05152 6.07818 6.16654 6.19001 6.21499 6.27366 6.35656 6.39268 6.43826 6.52712 6.54615 6.58046 6.74032 6.87633 7.07824 7.32841 7.41696 7.62404 7.85272 8.14257 8.85827 9.48852 10.97033 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009235 B = 0.007152 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.285465 B = 3914.289743 C = 5548.610978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.141 4.141 3 C 0.017 3.983 4 C -0.144 4.144 5 C -0.074 4.074 6 C -0.147 4.147 7 C -0.013 4.013 8 C -0.657 4.657 9 S 2.689 3.311 10 O -0.973 6.973 11 O -0.954 6.954 12 N -0.981 5.981 13 C 0.236 3.764 14 C -0.542 4.542 15 H 0.063 0.937 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.132 3.868 23 C -0.116 4.116 24 C -0.147 4.147 25 C -0.142 4.142 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.140 0.860 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.264 0.736 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.043 0.957 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.383 3.770 -6.720 12.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.178 4.178 3 C 0.016 3.984 4 C -0.163 4.163 5 C -0.092 4.092 6 C -0.166 4.166 7 C -0.032 4.032 8 C -0.742 4.742 9 S 2.779 3.221 10 O -0.963 6.963 11 O -0.945 6.945 12 N -0.820 5.820 13 C 0.114 3.886 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.717 3.283 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C 0.005 3.995 23 C -0.137 4.137 24 C -0.204 4.204 25 C -0.201 4.201 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.158 0.842 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.680 2.934 -6.536 12.860 hybrid contribution 1.481 1.191 -1.079 2.185 sum -9.199 4.125 -7.615 12.634 Atomic orbital electron populations 1.21976 0.93843 1.02536 1.03700 1.21323 0.97162 0.92890 1.06408 1.19408 0.92355 0.94764 0.91896 1.21044 1.02287 0.95597 0.97345 1.21306 0.95473 0.94327 0.98079 1.21213 1.02122 1.00549 0.92691 1.21002 0.90727 0.92219 0.99211 1.30995 1.16077 1.06870 1.20278 1.02092 0.73232 0.73924 0.72880 1.93528 1.29622 1.86974 1.86225 1.93520 1.74846 1.39866 1.86230 1.57321 1.32834 1.42480 1.49363 1.19505 0.75777 0.97404 0.95874 1.21587 0.91486 1.24749 1.20345 0.91929 1.24897 0.98523 0.95190 0.95013 1.69924 1.18794 1.34913 1.29006 0.86635 0.81608 0.79947 0.80132 1.20561 1.21070 1.19811 1.21274 0.94405 0.88469 0.95304 1.21588 0.97392 0.98454 0.96244 1.21955 0.99055 1.02522 0.96891 1.21768 0.99640 0.97951 1.00694 0.90764 0.92293 0.91631 0.89543 0.87566 0.85652 0.85818 0.85549 0.84215 0.92576 0.93002 0.92604 0.89635 0.91811 0.90721 0.92251 0.93744 0.91416 0.92848 0.92837 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.88 37.15 0.37 -1.92 16 2 C -0.14 -2.21 5.51 -27.89 -0.15 -2.36 16 3 C 0.02 0.30 5.13 -104.62 -0.54 -0.24 16 4 C -0.14 -2.09 9.68 -39.58 -0.38 -2.47 16 5 C -0.07 -1.01 10.05 -39.59 -0.40 -1.41 16 6 C -0.15 -2.22 10.05 -39.58 -0.40 -2.62 16 7 C -0.01 -0.23 8.78 -39.59 -0.35 -0.57 16 8 C -0.66 -12.42 5.83 -39.59 -0.23 -12.66 16 9 S 2.69 54.89 4.65 -107.50 -0.50 54.39 16 10 O -0.97 -19.63 15.11 -57.17 -0.86 -20.49 16 11 O -0.95 -22.20 14.03 -57.17 -0.80 -23.00 16 12 N -0.98 -19.75 1.88 -115.66 -0.22 -19.97 16 13 C 0.24 5.66 4.57 -5.19 -0.02 5.63 16 14 C -0.54 -13.97 9.39 -34.44 -0.32 -14.29 16 15 H 0.06 1.53 6.06 -52.49 -0.32 1.21 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 18 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 C 0.13 2.21 3.87 -4.04 -0.02 2.19 16 23 C -0.12 -1.80 3.14 -90.62 -0.28 -2.08 16 24 C -0.15 -2.36 7.76 37.16 0.29 -2.07 16 25 C -0.14 -1.76 9.19 37.16 0.34 -1.42 16 26 H 0.07 1.18 6.08 -51.93 -0.32 0.87 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 29 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 30 H 0.11 1.91 5.19 -51.93 -0.27 1.64 16 31 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.14 2.35 5.46 -52.48 -0.29 2.06 16 35 H 0.06 1.35 5.38 -51.93 -0.28 1.07 16 36 H 0.05 1.39 6.89 -51.93 -0.36 1.04 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 39 H 0.06 0.95 7.69 -51.93 -0.40 0.55 16 40 H 0.07 1.23 7.84 -51.93 -0.41 0.82 16 41 H 0.06 0.96 7.97 -51.92 -0.41 0.55 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.23 6.15 -51.93 -0.32 0.91 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -30.89 370.31 -10.43 -41.32 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.15 Total: 5.37 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: -2.20 Total: -34.58 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.52 Total: -44.32 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -1.67 Total: -43.50 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 54.89 SS G_CDS: -0.50 Total: 54.39 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.89 -10.43 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777928637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.407 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds