Wall clock time and date at job start Tue Mar 31 2020 14:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.46997 * 2 1 4 4 C 1.38266 * 120.00016 * 265.13443 * 3 2 1 5 5 C 1.38205 * 120.00173 * 180.27320 * 4 3 2 6 6 C 1.38259 * 119.99988 * 359.74881 * 5 4 3 7 7 C 1.38212 * 119.99766 * 359.97438 * 6 5 4 8 8 C 1.38211 * 120.00423 * 84.88074 * 3 2 1 9 9 S 1.76201 * 119.99790 * 0.02562 * 8 3 2 10 10 O 1.42109 * 106.39944 * 278.09215 * 9 8 3 11 11 O 1.42095 * 106.40489 * 51.01009 * 9 8 3 12 12 N 1.65597 * 107.21927 * 164.55639 * 9 8 3 13 13 C 1.46507 * 119.99532 * 264.31510 * 12 9 8 14 14 C 1.50698 * 109.47216 * 94.27872 * 13 12 9 15 15 H 1.07994 * 120.00049 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99946 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99843 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00135 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47474 * 89.99422 * 18 16 14 20 20 H 1.48500 * 109.47198 * 209.99809 * 18 16 14 21 21 H 1.48499 * 109.46931 * 329.99287 * 18 16 14 22 22 C 1.46495 * 120.00482 * 84.31126 * 12 9 8 23 23 C 1.53001 * 109.46971 * 93.83392 * 22 12 9 24 24 C 1.52998 * 109.47410 * 62.49435 * 23 22 12 25 25 C 1.53003 * 109.46945 * 182.49597 * 23 22 12 26 26 H 1.09003 * 109.47637 * 294.93882 * 1 2 3 27 27 H 1.09001 * 109.47490 * 54.94533 * 1 2 3 28 28 H 1.09009 * 109.46951 * 174.94545 * 1 2 3 29 29 H 1.09003 * 109.47332 * 239.99795 * 2 1 3 30 30 H 1.09004 * 109.47423 * 119.99185 * 2 1 3 31 31 H 1.08002 * 119.99363 * 0.04012 * 4 3 2 32 32 H 1.07998 * 120.00102 * 179.76825 * 5 4 3 33 33 H 1.07998 * 120.00395 * 179.97438 * 6 5 4 34 34 H 1.08006 * 119.99529 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46518 * 214.27422 * 13 12 9 36 36 H 1.09002 * 109.47272 * 334.27050 * 13 12 9 37 37 H 0.97001 * 119.99725 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.47267 * 213.83308 * 22 12 9 39 39 H 1.09002 * 109.46963 * 333.83632 * 22 12 9 40 40 H 1.09001 * 109.47353 * 302.49154 * 23 22 12 41 41 H 1.09008 * 109.46889 * 53.54487 * 24 23 22 42 42 H 1.08994 * 109.47274 * 173.54770 * 24 23 22 43 43 H 1.09001 * 109.47186 * 293.54970 * 24 23 22 44 44 H 1.08999 * 109.47357 * 59.99984 * 25 23 22 45 45 H 1.09001 * 109.47110 * 180.02562 * 25 23 22 46 46 H 1.08999 * 109.46918 * 299.99423 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3584 2.0388 -1.1931 5 6 2.8244 3.3399 -1.1927 6 6 2.9595 4.0254 0.0004 7 6 2.6281 3.4096 1.1925 8 6 2.1619 2.1081 1.1921 9 16 1.7405 1.3226 2.7121 10 8 0.3297 1.4318 2.8425 11 8 2.4283 0.0793 2.7255 12 7 2.3946 2.2321 3.9316 13 6 3.6972 1.8712 4.4968 14 6 4.7812 2.6517 3.7991 15 1 4.5255 3.3467 3.0130 16 6 6.0994 2.4777 4.1635 17 7 6.4108 1.6309 5.1205 18 14 7.4430 3.4457 3.2992 19 1 7.6720 4.7249 4.0178 20 1 8.6977 2.6514 3.2903 21 1 7.0275 3.7302 1.9022 22 6 1.6708 3.3976 4.4454 23 6 0.8367 2.9852 5.6599 24 6 1.7646 2.4949 6.7732 25 6 0.0328 4.1878 6.1586 26 1 -0.3634 0.4333 0.9318 27 1 -0.3634 0.5902 -0.8412 28 1 -0.3633 -1.0238 -0.0905 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 2.2526 1.5033 -2.1251 32 1 3.0828 3.8213 -2.1243 33 1 3.3241 5.0420 0.0009 34 1 2.7340 3.9450 2.1245 35 1 3.7087 2.1053 5.5613 36 1 3.8706 0.8041 4.3575 37 1 7.3383 1.5087 5.3771 38 1 2.3840 4.1678 4.7390 39 1 1.0132 3.7883 3.6687 40 1 0.1540 2.1840 5.3768 41 1 2.5201 3.2538 6.9771 42 1 1.1826 2.3098 7.6761 43 1 2.2522 1.5718 6.4597 44 1 -0.6283 4.5371 5.3655 45 1 -0.5611 3.8941 7.0241 46 1 0.7155 4.9889 6.4418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777928637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:14 Heat of formation + Delta-G solvation = -81.229944 kcal Electronic energy + Delta-G solvation = -27580.308580 eV Core-core repulsion = 23981.707233 eV Total energy + Delta-G solvation = -3598.601347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.38753 -38.74109 -38.20024 -37.03498 -35.44421 -35.09898 -33.90953 -32.19479 -30.40782 -29.50918 -27.93704 -26.56494 -25.12709 -24.18359 -24.05986 -22.18257 -21.30520 -19.92058 -18.73642 -18.51749 -18.09768 -17.39495 -16.88721 -16.55646 -16.30404 -15.92871 -15.66539 -15.26384 -14.94871 -14.88791 -14.70632 -14.26198 -14.21414 -13.94861 -13.65560 -13.47615 -13.34662 -13.13861 -13.06918 -13.02175 -12.94326 -12.83703 -12.72068 -12.67370 -12.51387 -12.22624 -12.10986 -11.88246 -11.84649 -11.66995 -11.56198 -11.41989 -11.31990 -10.53228 -10.28320 -9.78886 -9.71633 -8.15478 -6.27727 -0.48977 -0.09910 0.33712 1.40208 1.42298 1.51207 1.97642 2.42312 2.55021 2.68443 3.16593 3.57120 3.60120 3.79279 3.85370 3.98495 4.06966 4.18798 4.21233 4.25219 4.29177 4.38999 4.44257 4.54423 4.71175 4.78278 4.85284 4.85892 4.92199 4.95026 4.97894 5.02611 5.08136 5.13688 5.18898 5.25559 5.26293 5.36203 5.38458 5.39574 5.47086 5.53387 5.58170 5.76529 5.94066 5.94924 6.12748 6.83128 7.41284 8.92686 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009235 B = 0.007152 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.285465 B = 3914.289743 C = 5548.610978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.147 4.147 3 C -0.005 4.005 4 C -0.142 4.142 5 C -0.064 4.064 6 C -0.152 4.152 7 C -0.036 4.036 8 C -0.681 4.681 9 S 2.692 3.308 10 O -0.980 6.980 11 O -0.996 6.996 12 N -0.983 5.983 13 C 0.252 3.748 14 C -0.546 4.546 15 H 0.074 0.926 16 C 0.012 3.988 17 N -0.927 5.927 18 Si 0.951 3.049 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.265 1.265 22 C 0.123 3.877 23 C -0.117 4.117 24 C -0.144 4.144 25 C -0.136 4.136 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.155 0.845 34 H 0.137 0.863 35 H 0.051 0.949 36 H 0.012 0.988 37 H 0.264 0.736 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.729 6.195 -9.452 15.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.184 4.184 3 C -0.006 4.006 4 C -0.161 4.161 5 C -0.081 4.081 6 C -0.171 4.171 7 C -0.055 4.055 8 C -0.770 4.770 9 S 2.786 3.214 10 O -0.971 6.971 11 O -0.986 6.986 12 N -0.822 5.822 13 C 0.129 3.871 14 C -0.585 4.585 15 H 0.093 0.907 16 C -0.187 4.187 17 N -0.567 5.567 18 Si 0.777 3.223 19 H -0.192 1.192 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.002 4.002 23 C -0.138 4.138 24 C -0.201 4.201 25 C -0.194 4.194 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.135 0.865 30 H 0.092 0.908 31 H 0.180 0.820 32 H 0.186 0.814 33 H 0.173 0.827 34 H 0.154 0.846 35 H 0.069 0.931 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.066 5.363 -9.227 15.374 hybrid contribution 1.528 0.428 -0.312 1.617 sum -9.538 5.790 -9.539 14.680 Atomic orbital electron populations 1.21989 0.92760 1.04051 1.03159 1.21394 0.98248 0.92519 1.06255 1.19756 0.93051 0.95402 0.92432 1.21502 1.00829 0.96209 0.97531 1.21863 0.93135 0.93830 0.99298 1.21630 1.01321 1.01909 0.92209 1.21157 0.91857 0.91937 1.00515 1.30613 1.19012 1.07945 1.19440 1.01652 0.72870 0.73406 0.73521 1.93502 1.29794 1.87033 1.86728 1.93469 1.75534 1.42553 1.87092 1.57150 1.31626 1.43488 1.49887 1.19044 0.77449 0.94897 0.95694 1.21966 0.91909 1.24406 1.20199 0.90745 1.25747 1.00973 0.96230 0.95761 1.70061 1.19181 1.36708 1.30719 0.85648 0.78443 0.78826 0.79428 1.19223 1.21470 1.18892 1.21568 0.94709 0.87438 0.96448 1.21600 0.97094 0.99590 0.95498 1.21904 0.99259 1.00849 0.98131 1.21727 0.99632 0.96527 1.01510 0.93461 0.90075 0.89653 0.86527 0.90821 0.82028 0.81408 0.82718 0.84556 0.93150 0.97042 0.92671 0.89141 0.89913 0.92160 0.92624 0.91541 0.94569 0.91745 0.91455 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 9.88 71.98 0.71 -3.71 16 2 C -0.15 -4.55 5.51 29.85 0.16 -4.39 16 3 C 0.00 -0.16 5.13 -19.86 -0.10 -0.26 16 4 C -0.14 -3.61 9.68 22.27 0.22 -3.39 16 5 C -0.06 -1.45 10.05 22.27 0.22 -1.23 16 6 C -0.15 -4.09 10.05 22.27 0.22 -3.87 16 7 C -0.04 -1.22 8.78 22.27 0.20 -1.02 16 8 C -0.68 -25.83 5.83 22.27 0.13 -25.70 16 9 S 2.69 115.42 4.65 -56.49 -0.26 115.16 16 10 O -0.98 -41.30 15.11 -128.00 -1.93 -43.23 16 11 O -1.00 -49.91 14.03 -128.00 -1.80 -51.70 16 12 N -0.98 -41.41 1.88 -519.84 -0.98 -42.39 16 13 C 0.25 12.79 4.57 85.63 0.39 13.18 16 14 C -0.55 -28.73 9.39 25.60 0.24 -28.49 16 15 H 0.07 3.65 6.06 -2.91 -0.02 3.64 16 16 C 0.01 0.67 5.46 84.65 0.46 1.13 16 17 N -0.93 -54.09 13.29 21.45 0.28 -53.80 16 18 Si 0.95 42.47 29.54 68.60 2.03 44.50 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 22 C 0.12 4.19 3.87 86.38 0.33 4.53 16 23 C -0.12 -3.66 3.14 -10.79 -0.03 -3.70 16 24 C -0.14 -4.77 7.76 71.98 0.56 -4.21 16 25 C -0.14 -3.14 9.19 71.98 0.66 -2.48 16 26 H 0.05 1.53 6.08 -2.39 -0.01 1.52 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.12 2.77 8.05 -2.39 -0.02 2.75 16 30 H 0.07 2.78 5.19 -2.39 -0.01 2.77 16 31 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.14 4.54 5.46 -2.91 -0.02 4.53 16 35 H 0.05 2.58 5.38 -2.39 -0.01 2.57 16 36 H 0.01 0.67 6.89 -2.39 -0.02 0.66 16 37 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 38 H 0.09 2.95 8.10 -2.39 -0.02 2.93 16 39 H 0.08 2.46 7.69 -2.39 -0.02 2.45 16 40 H 0.06 2.04 7.84 -2.39 -0.02 2.03 16 41 H 0.05 1.85 7.97 -2.38 -0.02 1.83 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.04 1.40 6.15 -2.39 -0.01 1.38 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -70.48 370.31 2.68 -67.80 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.96 Total: 27.28 kcal Atomic # 6 Polarization: -67.97 SS G_CDS: 4.38 Total: -63.60 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -0.69 Total: -96.20 kcal Atomic # 8 Polarization: -91.20 SS G_CDS: -3.73 Total: -94.93 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 115.42 SS G_CDS: -0.26 Total: 115.16 kcal Total: -70.48 2.68 -67.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777928637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.435 kcal (2) G-P(sol) polarization free energy of solvation -70.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds