Wall clock time and date at job start Tue Mar 31 2020 14:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47193 * 2 1 4 4 C 1.50698 * 109.46921 * 119.99900 * 2 1 3 5 5 O 1.20822 * 120.00262 * 119.99873 * 4 2 1 6 6 O 1.34231 * 119.99868 * 299.72508 * 4 2 1 7 7 C 1.45204 * 116.99899 * 180.27588 * 6 4 2 8 8 C 1.50701 * 109.47301 * 179.97438 * 7 6 4 9 9 C 1.38634 * 119.74964 * 269.72852 * 8 7 6 10 10 C 1.37617 * 120.24609 * 179.72005 * 9 8 7 11 11 C 1.40715 * 119.74383 * 0.56848 * 10 9 8 12 12 C 1.41399 * 120.24038 * 179.68292 * 11 10 9 13 13 H 1.08000 * 119.99884 * 204.40843 * 12 11 10 14 14 C 1.39938 * 120.00330 * 24.40767 * 12 11 10 15 15 N 1.30823 * 119.99972 * 17.84680 * 14 12 11 16 16 Si 1.86805 * 120.00248 * 197.84672 * 14 12 11 17 17 H 1.48501 * 109.46890 * 89.99853 * 16 14 12 18 18 H 1.48501 * 109.47091 * 209.99968 * 16 14 12 19 19 H 1.48500 * 109.46770 * 330.00006 * 16 14 12 20 20 C 1.40709 * 119.51466 * 359.70567 * 11 10 9 21 21 C 1.37619 * 119.74340 * 359.97438 * 20 11 10 22 22 C 1.50696 * 109.46877 * 239.99786 * 2 1 3 23 23 C 1.38673 * 120.41572 * 179.72223 * 22 2 1 24 24 C 1.38626 * 118.42103 * 179.78392 * 23 22 2 25 25 C 1.38227 * 119.16140 * 0.51063 * 24 23 22 26 26 N 1.31857 * 120.76199 * 359.73292 * 25 24 23 27 27 C 1.31887 * 121.72383 * 359.97438 * 26 25 24 28 28 H 1.09008 * 109.47179 * 300.00493 * 1 2 3 29 29 H 1.09000 * 109.47002 * 60.00018 * 1 2 3 30 30 H 1.08996 * 109.47498 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46687 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47132 * 299.99903 * 3 2 1 33 33 H 1.09001 * 109.46823 * 59.99757 * 3 2 1 34 34 H 1.09004 * 109.47062 * 299.99777 * 7 6 4 35 35 H 1.09001 * 109.47250 * 60.00038 * 7 6 4 36 36 H 1.07998 * 119.87138 * 359.97438 * 9 8 7 37 37 H 1.08001 * 120.12783 * 180.28123 * 10 9 8 38 38 H 0.97005 * 120.00269 * 179.97438 * 15 14 12 39 39 H 1.08004 * 120.13120 * 179.97438 * 20 11 10 40 40 H 1.08000 * 119.87210 * 179.97438 * 21 20 11 41 41 H 1.08004 * 120.79271 * 0.02562 * 23 22 2 42 42 H 1.08004 * 120.42396 * 180.22393 * 24 23 22 43 43 H 1.07999 * 119.61889 * 179.74448 * 25 24 23 44 44 H 1.08004 * 119.61449 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7269 -1.6928 1.1197 6 8 1.7125 -0.2485 2.4496 7 6 2.2365 -0.9794 3.5897 8 6 1.7772 -0.3188 4.8640 9 6 2.5530 0.6737 5.4426 10 6 2.1406 1.2878 6.6031 11 6 0.9323 0.8962 7.2088 12 6 0.5018 1.5153 8.4049 13 1 -0.1683 0.9937 9.0721 14 6 0.9441 2.8040 8.7242 15 7 1.4545 3.5696 7.7942 16 14 0.8058 3.4312 10.4783 17 1 2.0433 3.0902 11.2250 18 1 0.6264 4.9053 10.4643 19 1 -0.3624 2.7966 11.1402 20 6 0.1558 -0.1164 6.6156 21 6 0.5846 -0.7120 5.4514 22 6 2.0323 -0.7104 -1.2304 23 6 3.3938 -0.8371 -1.4614 24 6 3.8101 -1.5025 -2.6041 25 6 2.8610 -2.0046 -3.4745 26 7 1.5742 -1.8611 -3.2252 27 6 1.1421 -1.2391 -2.1455 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.8729 -2.0066 3.5610 35 1 3.3258 -0.9783 3.5525 36 1 3.4825 0.9690 4.9787 37 1 2.7442 2.0639 7.0498 38 1 1.7608 4.4630 8.0154 39 1 -0.7730 -0.4250 7.0722 40 1 -0.0095 -1.4896 4.9946 41 1 4.1128 -0.4305 -0.7655 42 1 4.8626 -1.6229 -2.8140 43 1 3.1771 -2.5206 -4.3691 44 1 0.0801 -1.1414 -1.9748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782426672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:18 Heat of formation + Delta-G solvation = -42.847694 kcal Electronic energy + Delta-G solvation = -26300.728830 eV Core-core repulsion = 22568.347911 eV Total energy + Delta-G solvation = -3732.380919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09699 -39.77635 -37.76462 -36.38973 -35.70320 -33.89734 -32.42490 -30.91002 -30.25013 -29.40310 -27.77050 -27.29308 -24.78418 -23.98803 -23.39647 -22.58290 -21.12273 -20.10099 -19.80304 -17.52398 -17.42679 -17.11666 -16.68542 -16.25933 -15.91793 -15.39027 -14.99246 -14.50969 -14.33591 -14.01712 -13.88410 -13.79044 -13.31328 -13.16349 -13.06196 -12.61218 -12.46670 -12.24833 -12.16543 -12.10395 -12.02892 -11.76855 -11.56112 -11.23682 -11.22051 -11.02589 -10.84849 -10.48044 -10.22253 -10.14799 -9.91532 -9.74565 -9.58621 -9.49760 -9.26736 -9.18617 -7.60031 -7.48681 -6.89871 -4.49762 0.88622 1.13870 2.37278 2.41245 2.91949 2.97422 3.01117 3.03581 3.29844 3.70683 3.83112 4.09124 4.37853 4.45089 4.53687 4.71368 4.76784 4.82778 4.97651 5.03595 5.34827 5.41740 5.49041 5.54703 5.57988 5.58992 5.62486 5.63897 5.69604 5.91538 5.92150 6.00920 6.06166 6.15623 6.21521 6.27547 6.49973 6.80294 6.84471 6.94472 7.14806 7.23093 7.48190 7.70398 7.78078 7.92571 7.97240 8.01859 8.15935 8.50663 8.75378 8.83339 10.03839 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.030373 B = 0.002266 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.641696 B =12351.215820 C =12458.807534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.011 4.011 3 C -0.139 4.139 4 C 0.464 3.536 5 O -0.514 6.514 6 O -0.343 6.343 7 C 0.136 3.864 8 C -0.236 4.236 9 C -0.075 4.075 10 C -0.170 4.170 11 C 0.118 3.882 12 C -0.455 4.455 13 H 0.080 0.920 14 C 0.075 3.925 15 N -0.785 5.785 16 Si 0.911 3.089 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.230 4.230 21 C -0.063 4.063 22 C -0.118 4.118 23 C -0.044 4.044 24 C -0.173 4.173 25 C 0.095 3.905 26 N -0.486 5.486 27 C 0.105 3.895 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.283 0.717 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.154 0.846 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -3.124 -15.923 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 C -0.197 4.197 4 C 0.307 3.693 5 O -0.403 6.403 6 O -0.259 6.259 7 C 0.064 3.936 8 C -0.237 4.237 9 C -0.094 4.094 10 C -0.190 4.190 11 C 0.115 3.885 12 C -0.484 4.484 13 H 0.099 0.901 14 C -0.144 4.144 15 N -0.409 5.409 16 Si 0.735 3.265 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.249 4.249 21 C -0.082 4.082 22 C -0.120 4.120 23 C -0.070 4.070 24 C -0.193 4.193 25 C -0.062 4.062 26 N -0.195 5.195 27 C -0.052 4.052 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.172 0.828 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.000 -3.519 -16.533 17.021 hybrid contribution 0.777 0.560 1.424 1.716 sum 2.778 -2.959 -15.109 15.645 Atomic orbital electron populations 1.21980 0.90954 1.03246 1.04302 1.19301 0.98183 0.96152 0.87648 1.21901 1.01527 0.92109 1.04114 1.23320 0.77636 0.82717 0.85643 1.90634 1.35967 1.26004 1.87680 1.86715 1.69104 1.55856 1.14202 1.21748 0.97247 0.93708 0.80904 1.18657 1.00828 1.06989 0.97220 1.20526 0.97623 0.95001 0.96236 1.21295 0.97561 1.02679 0.97441 1.17690 0.89898 0.89503 0.91366 1.19689 1.25024 0.99131 1.04571 0.90138 1.25974 0.92748 0.96657 0.99046 1.69826 1.29176 1.08110 1.33796 0.86268 0.79972 0.78130 0.82156 1.19142 1.20190 1.18492 1.20965 1.00765 1.04604 0.98614 1.20387 0.94300 0.97852 0.95619 1.20386 0.94602 1.00568 0.96419 1.21408 0.95278 0.94602 0.95672 1.22111 1.01342 1.00151 0.95690 1.22767 0.88395 0.96336 0.98715 1.67737 1.17581 1.14486 1.19671 1.22790 1.00339 0.92766 0.89288 0.89831 0.90625 0.91638 0.92037 0.90944 0.89888 0.92162 0.92126 0.89388 0.86235 0.90616 0.88709 0.89334 0.85111 0.84748 0.82832 0.82320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 7.08 37.16 0.26 -1.23 16 2 C -0.01 -0.13 0.80 -156.81 -0.13 -0.26 16 3 C -0.14 -1.46 8.22 37.16 0.31 -1.15 16 4 C 0.46 7.30 6.43 36.00 0.23 7.53 16 5 O -0.51 -9.16 14.91 -18.75 -0.28 -9.43 16 6 O -0.34 -6.07 10.01 -39.26 -0.39 -6.47 16 7 C 0.14 2.54 5.58 36.01 0.20 2.74 16 8 C -0.24 -5.08 5.54 -104.33 -0.58 -5.66 16 9 C -0.08 -1.71 9.67 -39.66 -0.38 -2.10 16 10 C -0.17 -4.29 8.70 -38.87 -0.34 -4.63 16 11 C 0.12 3.05 5.57 -106.83 -0.60 2.45 16 12 C -0.46 -11.63 9.05 -37.74 -0.34 -11.97 16 13 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 14 C 0.07 1.80 5.14 -17.35 -0.09 1.71 16 15 N -0.78 -19.49 10.95 55.55 0.61 -18.88 16 16 Si 0.91 17.89 29.60 -169.99 -5.03 12.86 16 17 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 18 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 20 C -0.23 -5.48 9.80 -38.87 -0.38 -5.86 16 21 C -0.06 -1.39 9.67 -39.66 -0.38 -1.77 16 22 C -0.12 -1.39 4.37 -104.49 -0.46 -1.85 16 23 C -0.04 -0.50 8.10 -39.28 -0.32 -0.82 16 24 C -0.17 -1.69 10.11 -39.44 -0.40 -2.09 16 25 C 0.09 0.96 11.18 -17.54 -0.20 0.76 16 26 N -0.49 -5.86 10.36 -13.25 -0.14 -6.00 16 27 C 0.10 1.20 10.15 -17.55 -0.18 1.02 16 28 H 0.08 0.91 8.12 -51.92 -0.42 0.49 16 29 H 0.07 0.58 7.53 -51.93 -0.39 0.19 16 30 H 0.06 0.65 7.53 -51.93 -0.39 0.26 16 31 H 0.06 0.62 7.44 -51.93 -0.39 0.24 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 34 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 35 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 36 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 38 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 39 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.13 1.45 7.62 -52.48 -0.40 1.05 16 42 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 43 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 44 H 0.16 1.49 5.91 -52.48 -0.31 1.18 16 LS Contribution 371.53 15.07 5.60 5.60 Total: -1.00 -29.14 371.53 -9.37 -38.50 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.97 Total: 6.98 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -3.76 Total: -23.16 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.47 Total: -24.88 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.67 Total: -15.90 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.14 -9.37 -38.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782426672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.343 kcal (2) G-P(sol) polarization free energy of solvation -29.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds