Wall clock time and date at job start Tue Mar 31 2020 14:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47193 * 2 1 4 4 C 1.50698 * 109.46921 * 119.99900 * 2 1 3 5 5 O 1.20822 * 120.00262 * 119.99873 * 4 2 1 6 6 O 1.34231 * 119.99868 * 299.72508 * 4 2 1 7 7 C 1.45204 * 116.99899 * 180.27588 * 6 4 2 8 8 C 1.50701 * 109.47301 * 179.97438 * 7 6 4 9 9 C 1.38634 * 119.74964 * 269.72852 * 8 7 6 10 10 C 1.37617 * 120.24609 * 179.72005 * 9 8 7 11 11 C 1.40715 * 119.74383 * 0.56848 * 10 9 8 12 12 C 1.41399 * 120.24038 * 179.68292 * 11 10 9 13 13 H 1.08000 * 119.99884 * 204.40843 * 12 11 10 14 14 C 1.39938 * 120.00330 * 24.40767 * 12 11 10 15 15 N 1.30823 * 119.99972 * 17.84680 * 14 12 11 16 16 Si 1.86805 * 120.00248 * 197.84672 * 14 12 11 17 17 H 1.48501 * 109.46890 * 89.99853 * 16 14 12 18 18 H 1.48501 * 109.47091 * 209.99968 * 16 14 12 19 19 H 1.48500 * 109.46770 * 330.00006 * 16 14 12 20 20 C 1.40709 * 119.51466 * 359.70567 * 11 10 9 21 21 C 1.37619 * 119.74340 * 359.97438 * 20 11 10 22 22 C 1.50696 * 109.46877 * 239.99786 * 2 1 3 23 23 C 1.38673 * 120.41572 * 179.72223 * 22 2 1 24 24 C 1.38626 * 118.42103 * 179.78392 * 23 22 2 25 25 C 1.38227 * 119.16140 * 0.51063 * 24 23 22 26 26 N 1.31857 * 120.76199 * 359.73292 * 25 24 23 27 27 C 1.31887 * 121.72383 * 359.97438 * 26 25 24 28 28 H 1.09008 * 109.47179 * 300.00493 * 1 2 3 29 29 H 1.09000 * 109.47002 * 60.00018 * 1 2 3 30 30 H 1.08996 * 109.47498 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46687 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47132 * 299.99903 * 3 2 1 33 33 H 1.09001 * 109.46823 * 59.99757 * 3 2 1 34 34 H 1.09004 * 109.47062 * 299.99777 * 7 6 4 35 35 H 1.09001 * 109.47250 * 60.00038 * 7 6 4 36 36 H 1.07998 * 119.87138 * 359.97438 * 9 8 7 37 37 H 1.08001 * 120.12783 * 180.28123 * 10 9 8 38 38 H 0.97005 * 120.00269 * 179.97438 * 15 14 12 39 39 H 1.08004 * 120.13120 * 179.97438 * 20 11 10 40 40 H 1.08000 * 119.87210 * 179.97438 * 21 20 11 41 41 H 1.08004 * 120.79271 * 0.02562 * 23 22 2 42 42 H 1.08004 * 120.42396 * 180.22393 * 24 23 22 43 43 H 1.07999 * 119.61889 * 179.74448 * 25 24 23 44 44 H 1.08004 * 119.61449 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7269 -1.6928 1.1197 6 8 1.7125 -0.2485 2.4496 7 6 2.2365 -0.9794 3.5897 8 6 1.7772 -0.3188 4.8640 9 6 2.5530 0.6737 5.4426 10 6 2.1406 1.2878 6.6031 11 6 0.9323 0.8962 7.2088 12 6 0.5018 1.5153 8.4049 13 1 -0.1683 0.9937 9.0721 14 6 0.9441 2.8040 8.7242 15 7 1.4545 3.5696 7.7942 16 14 0.8058 3.4312 10.4783 17 1 2.0433 3.0902 11.2250 18 1 0.6264 4.9053 10.4643 19 1 -0.3624 2.7966 11.1402 20 6 0.1558 -0.1164 6.6156 21 6 0.5846 -0.7120 5.4514 22 6 2.0323 -0.7104 -1.2304 23 6 3.3938 -0.8371 -1.4614 24 6 3.8101 -1.5025 -2.6041 25 6 2.8610 -2.0046 -3.4745 26 7 1.5742 -1.8611 -3.2252 27 6 1.1421 -1.2391 -2.1455 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.8729 -2.0066 3.5610 35 1 3.3258 -0.9783 3.5525 36 1 3.4825 0.9690 4.9787 37 1 2.7442 2.0639 7.0498 38 1 1.7608 4.4630 8.0154 39 1 -0.7730 -0.4250 7.0722 40 1 -0.0095 -1.4896 4.9946 41 1 4.1128 -0.4305 -0.7655 42 1 4.8626 -1.6229 -2.8140 43 1 3.1771 -2.5206 -4.3691 44 1 0.0801 -1.1414 -1.9748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782426672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:17 Heat of formation + Delta-G solvation = -55.560805 kcal Electronic energy + Delta-G solvation = -26301.280112 eV Core-core repulsion = 22568.347911 eV Total energy + Delta-G solvation = -3732.932201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.15383 -40.85124 -39.50234 -37.68615 -36.79917 -35.68587 -33.23568 -32.60218 -31.25687 -31.12631 -28.98411 -28.57861 -26.07600 -25.24812 -24.26456 -23.71108 -22.95827 -21.85701 -20.91593 -19.27623 -18.45531 -18.26925 -17.82059 -17.41582 -17.20425 -16.92417 -16.13389 -15.79071 -15.63976 -15.49245 -15.08947 -14.81275 -14.53573 -14.24286 -14.16973 -14.07904 -13.87072 -13.56856 -13.50651 -13.29330 -13.22841 -12.93393 -12.86056 -12.69866 -12.59536 -12.39253 -12.13247 -12.04292 -11.70781 -11.56823 -11.34428 -11.27968 -11.05065 -10.75257 -10.42809 -10.00503 -9.44615 -9.33874 -8.69407 -6.40308 0.06915 0.31279 0.73806 1.10157 1.13309 1.38325 1.44314 1.51963 1.90697 2.19124 2.69373 2.87725 3.22469 3.58824 3.61629 3.70861 3.83204 3.89521 3.99486 4.04879 4.07426 4.08799 4.28578 4.44798 4.47328 4.53697 4.57402 4.67181 4.69354 4.75657 4.81807 4.86968 4.99895 5.10662 5.11411 5.14165 5.20861 5.29567 5.32603 5.38571 5.48498 5.64265 5.73276 5.87600 6.04949 6.13562 6.31287 6.63679 6.71121 6.87959 6.96343 6.98396 8.27161 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.030373 B = 0.002266 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.641696 B =12351.215820 C =12458.807534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.004 4.004 3 C -0.137 4.137 4 C 0.464 3.536 5 O -0.536 6.536 6 O -0.352 6.352 7 C 0.141 3.859 8 C -0.228 4.228 9 C -0.079 4.079 10 C -0.193 4.193 11 C 0.087 3.913 12 C -0.492 4.492 13 H 0.079 0.921 14 C 0.035 3.965 15 N -0.817 5.817 16 Si 0.984 3.016 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.258 1.258 20 C -0.245 4.245 21 C -0.065 4.065 22 C -0.130 4.130 23 C -0.060 4.060 24 C -0.171 4.171 25 C 0.091 3.909 26 N -0.508 5.508 27 C 0.098 3.902 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.291 0.709 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.128 0.872 42 H 0.161 0.839 43 H 0.183 0.817 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.343 -3.371 -17.436 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.006 4.006 3 C -0.194 4.194 4 C 0.308 3.692 5 O -0.426 6.426 6 O -0.268 6.268 7 C 0.068 3.932 8 C -0.230 4.230 9 C -0.098 4.098 10 C -0.213 4.213 11 C 0.085 3.915 12 C -0.521 4.521 13 H 0.097 0.903 14 C -0.181 4.181 15 N -0.442 5.442 16 Si 0.805 3.195 17 H -0.187 1.187 18 H -0.191 1.191 19 H -0.181 1.181 20 C -0.264 4.264 21 C -0.083 4.083 22 C -0.132 4.132 23 C -0.086 4.086 24 C -0.191 4.191 25 C -0.066 4.066 26 N -0.217 5.217 27 C -0.059 4.059 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.134 0.866 41 H 0.146 0.854 42 H 0.179 0.821 43 H 0.200 0.800 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.028 -3.772 -18.066 18.567 hybrid contribution 0.830 0.529 1.692 1.957 sum 2.857 -3.243 -16.374 16.935 Atomic orbital electron populations 1.22027 0.89515 1.03629 1.05243 1.19371 0.99247 0.96322 0.85664 1.21914 1.01566 0.91240 1.04702 1.24110 0.76914 0.82494 0.85688 1.90619 1.37012 1.27135 1.87791 1.86681 1.69361 1.55958 1.14836 1.21561 0.97598 0.93731 0.80272 1.18950 1.00101 1.05760 0.98150 1.20756 0.98469 0.94980 0.95556 1.21267 0.97831 1.03427 0.98753 1.18045 0.90624 0.90635 0.92216 1.19925 1.26553 1.00320 1.05253 0.90261 1.26813 0.91905 0.96279 1.03111 1.69869 1.29820 1.08718 1.35784 0.85170 0.79983 0.77801 0.76589 1.18673 1.19133 1.18118 1.21170 1.01120 1.04694 0.99434 1.20693 0.94635 0.98055 0.94898 1.20401 0.94964 1.01357 0.96446 1.21594 0.95320 0.95250 0.96470 1.22419 1.02815 0.99038 0.94786 1.23303 0.87882 0.95822 0.99581 1.67784 1.18702 1.15124 1.20076 1.23047 1.01131 0.92526 0.89149 0.90767 0.87815 0.91559 0.92076 0.88620 0.90970 0.91217 0.91497 0.87615 0.87751 0.89851 0.87961 0.86564 0.85360 0.82094 0.79995 0.80803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 7.08 71.98 0.51 -2.20 16 2 C 0.00 -0.09 0.80 -53.67 -0.04 -0.14 16 3 C -0.14 -2.67 8.22 71.98 0.59 -2.08 16 4 C 0.46 14.09 6.43 71.24 0.46 14.55 16 5 O -0.54 -18.56 14.91 21.98 0.33 -18.24 16 6 O -0.35 -12.13 10.01 -51.42 -0.51 -12.64 16 7 C 0.14 5.08 5.58 71.24 0.40 5.48 16 8 C -0.23 -9.72 5.54 -19.67 -0.11 -9.82 16 9 C -0.08 -3.63 9.67 22.22 0.21 -3.42 16 10 C -0.19 -10.04 8.70 22.73 0.20 -9.84 16 11 C 0.09 4.65 5.57 -21.29 -0.12 4.53 16 12 C -0.49 -25.92 9.05 23.46 0.21 -25.71 16 13 H 0.08 4.02 7.91 -2.91 -0.02 3.99 16 14 C 0.04 1.72 5.14 85.25 0.44 2.16 16 15 N -0.82 -41.60 10.95 21.82 0.24 -41.37 16 16 Si 0.98 36.98 29.60 68.60 2.03 39.01 16 17 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 18 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 19 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 20 C -0.24 -11.83 9.80 22.73 0.22 -11.60 16 21 C -0.06 -2.80 9.67 22.22 0.21 -2.58 16 22 C -0.13 -2.86 4.37 -19.78 -0.09 -2.94 16 23 C -0.06 -1.29 8.10 22.47 0.18 -1.11 16 24 C -0.17 -2.96 10.11 22.36 0.23 -2.73 16 25 C 0.09 1.61 11.18 84.69 0.95 2.56 16 26 N -0.51 -11.24 10.36 -195.84 -2.03 -13.27 16 27 C 0.10 2.05 10.15 84.67 0.86 2.91 16 28 H 0.07 1.52 8.12 -2.38 -0.02 1.50 16 29 H 0.10 1.31 7.53 -2.39 -0.02 1.29 16 30 H 0.07 1.20 7.53 -2.39 -0.02 1.18 16 31 H 0.06 1.18 7.44 -2.39 -0.02 1.16 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 34 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 35 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 36 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 37 H 0.10 5.64 6.16 -2.91 -0.02 5.62 16 38 H 0.29 13.30 8.30 -92.70 -0.77 12.53 16 39 H 0.10 4.64 8.06 -2.91 -0.02 4.61 16 40 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 41 H 0.13 2.72 7.62 -2.91 -0.02 2.70 16 42 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 43 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.18 2.89 5.91 -2.91 -0.02 2.87 16 Total: -1.00 -63.77 371.53 6.37 -57.40 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 1.00 Total: 31.09 kcal Atomic # 6 Polarization: -47.30 SS G_CDS: 5.32 Total: -41.98 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -1.79 Total: -54.63 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.19 Total: -30.88 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Total: -63.77 6.37 -57.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782426672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.841 kcal (2) G-P(sol) polarization free energy of solvation -63.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds