Wall clock time and date at job start Tue Mar 31 2020 14:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46674 * 2 1 4 4 C 1.37994 * 119.96582 * 264.99278 * 3 2 1 5 5 C 1.38580 * 120.43669 * 179.97438 * 4 3 2 6 6 C 1.37765 * 120.36247 * 359.97438 * 5 4 3 7 7 C 1.39757 * 119.92088 * 0.02562 * 6 5 4 8 8 C 1.47289 * 120.21659 * 180.02562 * 7 6 5 9 9 O 1.21518 * 120.00487 * 173.79878 * 8 7 6 10 10 O 1.34769 * 120.00065 * 353.79476 * 8 7 6 11 11 C 1.45202 * 117.00641 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47515 * 179.97438 * 11 10 8 13 13 C 1.38625 * 119.75150 * 269.73143 * 12 11 10 14 14 C 1.37618 * 120.24698 * 179.72200 * 13 12 11 15 15 C 1.40714 * 119.74588 * 0.56907 * 14 13 12 16 16 C 1.41393 * 120.24653 * 179.68532 * 15 14 13 17 17 H 1.08003 * 120.00004 * 203.66715 * 16 15 14 18 18 C 1.39948 * 119.99902 * 23.66632 * 16 15 14 19 19 N 1.30820 * 120.00003 * 18.36349 * 18 16 15 20 20 Si 1.86804 * 119.99780 * 198.36058 * 18 16 15 21 21 H 1.48500 * 109.47245 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46742 * 120.00454 * 20 18 16 23 23 H 1.48500 * 109.47199 * 239.99878 * 20 18 16 24 24 C 1.40713 * 119.51153 * 359.69956 * 15 14 13 25 25 C 1.37614 * 119.74482 * 0.02562 * 24 15 14 26 26 C 1.38921 * 119.97057 * 84.97757 * 3 2 1 27 27 N 1.38841 * 120.17739 * 0.03560 * 26 3 2 28 28 H 1.09008 * 109.46884 * 60.00619 * 1 2 3 29 29 H 1.08997 * 109.46842 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47538 * 300.00648 * 1 2 3 31 31 H 1.08998 * 109.47165 * 239.99977 * 2 1 3 32 32 H 1.09001 * 109.46682 * 119.99057 * 2 1 3 33 33 H 1.07998 * 119.78116 * 0.26036 * 4 3 2 34 34 H 1.08003 * 119.82070 * 179.97438 * 5 4 3 35 35 H 1.07998 * 120.03907 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46706 * 299.99971 * 11 10 8 37 37 H 1.09006 * 109.46665 * 59.99503 * 11 10 8 38 38 H 1.08004 * 119.87755 * 359.97179 * 13 12 11 39 39 H 1.08002 * 120.12578 * 180.27539 * 14 13 12 40 40 H 0.97002 * 119.99570 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.13078 * 179.97438 * 24 15 14 42 42 H 1.08006 * 119.88057 * 180.02562 * 25 24 15 43 43 H 0.96998 * 120.00359 * 156.14865 * 27 26 3 44 44 H 0.97003 * 119.99754 * 336.14949 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3603 2.0359 -1.1909 5 6 2.8226 3.3423 -1.2023 6 6 2.9595 4.0428 -0.0240 7 6 2.6316 3.4345 1.1908 8 6 2.7750 4.1776 2.4544 9 8 2.3840 3.6875 3.4953 10 8 3.3400 5.4011 2.4562 11 6 3.4493 6.0750 3.7378 12 6 4.1016 7.4196 3.5444 13 6 5.4803 7.5343 3.6324 14 6 6.0872 8.7562 3.4519 15 6 5.3018 9.8938 3.1889 16 6 5.9138 11.1556 3.0083 17 1 5.3502 12.0595 3.1864 18 6 7.2498 11.2331 2.5988 19 7 7.8247 10.1977 2.0431 20 14 8.2120 12.8151 2.8456 21 1 7.3402 13.8291 3.4914 22 1 9.3877 12.5491 3.7130 23 1 8.6732 13.3244 1.5292 24 6 3.9028 9.7665 3.1074 25 6 3.3179 8.5336 3.2856 26 6 2.1642 2.1103 1.1988 27 7 1.8352 1.4936 2.3985 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 2.2518 1.4972 -2.1206 34 1 3.0769 3.8139 -2.1401 35 1 3.3207 5.0605 -0.0389 36 1 2.4547 6.2110 4.1626 37 1 4.0543 5.4720 4.4149 38 1 6.0808 6.6608 3.8394 39 1 7.1618 8.8425 3.5165 40 1 8.7506 10.2516 1.7590 41 1 3.2904 10.6331 2.9064 42 1 2.2443 8.4333 3.2231 43 1 2.2296 1.8050 3.2281 44 1 1.2109 0.7512 2.4069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785286912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:25 Heat of formation + Delta-G solvation = -55.908876 kcal Electronic energy + Delta-G solvation = -25898.087938 eV Core-core repulsion = 22165.140644 eV Total energy + Delta-G solvation = -3732.947294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52742 -39.10952 -37.62838 -36.08772 -34.86370 -33.85215 -33.75038 -30.95583 -30.09243 -29.35238 -28.57751 -27.18187 -24.51891 -24.07582 -23.18266 -21.19323 -21.07869 -20.57283 -20.02707 -17.45883 -17.38698 -17.07481 -16.96264 -16.45429 -15.86345 -15.36349 -14.86921 -14.63631 -14.26273 -14.16399 -13.86645 -13.79184 -13.71759 -13.39265 -12.85494 -12.53858 -12.41188 -12.15587 -12.03775 -12.00175 -11.93639 -11.72444 -11.29827 -11.18213 -11.08781 -10.97958 -10.83056 -10.61537 -10.43584 -10.14210 -10.05195 -9.67685 -9.47126 -9.21309 -8.91908 -7.68971 -7.55861 -7.44878 -6.86839 -4.45870 0.83236 1.48117 2.46816 2.74253 2.95882 3.01296 3.03616 3.08311 3.44107 3.81493 3.85731 3.85786 4.50888 4.54765 4.69906 4.92712 5.03938 5.08885 5.23093 5.29941 5.35912 5.55315 5.61240 5.62598 5.69150 5.71878 5.73415 5.86750 5.99490 6.07033 6.20682 6.26630 6.32461 6.33645 6.48328 6.72709 6.86512 6.89502 6.97679 7.19500 7.27537 7.40157 7.52345 7.74525 7.80068 7.96531 8.02333 8.13797 8.19818 8.54620 8.79080 8.87527 10.06649 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024519 B = 0.002279 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.699180 B =12285.566214 C =12888.704082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 C -0.177 4.177 4 C -0.041 4.041 5 C -0.189 4.189 6 C -0.017 4.017 7 C -0.204 4.204 8 C 0.512 3.488 9 O -0.533 6.533 10 O -0.344 6.344 11 C 0.137 3.863 12 C -0.236 4.236 13 C -0.075 4.075 14 C -0.172 4.172 15 C 0.118 3.882 16 C -0.455 4.455 17 H 0.081 0.919 18 C 0.075 3.925 19 N -0.783 5.783 20 Si 0.909 3.091 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.231 4.231 25 C -0.063 4.063 26 C 0.279 3.721 27 N -0.860 5.860 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.282 0.718 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.412 0.588 44 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 -16.609 -5.043 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.182 4.182 4 C -0.060 4.060 5 C -0.208 4.208 6 C -0.036 4.036 7 C -0.210 4.210 8 C 0.360 3.640 9 O -0.426 6.426 10 O -0.259 6.259 11 C 0.066 3.934 12 C -0.237 4.237 13 C -0.094 4.094 14 C -0.191 4.191 15 C 0.115 3.885 16 C -0.484 4.484 17 H 0.099 0.901 18 C -0.144 4.144 19 N -0.408 5.408 20 Si 0.733 3.267 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.250 4.250 25 C -0.082 4.082 26 C 0.169 3.831 27 N -0.406 5.406 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.250 0.750 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.380 -16.734 -4.794 19.320 hybrid contribution 0.417 0.556 0.382 0.793 sum -7.963 -16.178 -4.412 18.564 Atomic orbital electron populations 1.21809 0.95154 1.01519 1.02321 1.20335 0.95721 0.92376 1.02771 1.19400 1.09930 0.96929 0.91897 1.21020 0.93793 0.94435 0.96756 1.20897 1.06436 0.95300 0.98210 1.21386 0.91665 0.99861 0.90674 1.18817 1.16787 0.93176 0.92239 1.21018 0.73992 0.80561 0.88441 1.90563 1.48630 1.68986 1.34431 1.86786 1.71640 1.28807 1.38715 1.21723 0.99678 0.90989 0.81059 1.18672 0.93734 0.91327 1.20002 1.20537 0.92942 0.96811 0.99064 1.21304 0.99983 0.92060 1.05755 1.17689 0.90960 0.93251 0.86607 1.19709 0.95609 0.93696 1.39356 0.90131 1.25983 0.98016 0.98201 0.92248 1.69840 1.13512 1.31023 1.26419 0.86241 0.79686 0.81760 0.78974 1.18279 1.19588 1.19869 1.20954 0.95123 0.95871 1.13062 1.20394 0.96892 0.92964 0.97915 1.17451 0.90016 0.88668 0.86935 1.42946 1.51277 1.38773 1.07564 0.92328 0.92465 0.92818 0.90875 0.91394 0.85837 0.85540 0.84243 0.92133 0.92097 0.89357 0.86189 0.90675 0.88734 0.89321 0.75007 0.77711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.81 37.16 0.36 -0.66 16 2 C -0.07 -0.57 5.43 -27.88 -0.15 -0.72 16 3 C -0.18 -1.85 5.15 -104.46 -0.54 -2.38 16 4 C -0.04 -0.41 9.66 -39.54 -0.38 -0.79 16 5 C -0.19 -2.10 10.02 -39.63 -0.40 -2.49 16 6 C -0.02 -0.23 9.61 -39.19 -0.38 -0.61 16 7 C -0.20 -3.05 5.89 -104.82 -0.62 -3.67 16 8 C 0.51 8.92 7.86 34.41 0.27 9.19 16 9 O -0.53 -9.55 13.61 -19.28 -0.26 -9.81 16 10 O -0.34 -6.61 9.47 -40.68 -0.39 -6.99 16 11 C 0.14 2.67 5.59 36.00 0.20 2.87 16 12 C -0.24 -5.26 5.54 -104.33 -0.58 -5.84 16 13 C -0.07 -1.76 9.67 -39.66 -0.38 -2.14 16 14 C -0.17 -4.42 8.71 -38.87 -0.34 -4.76 16 15 C 0.12 3.10 5.58 -106.83 -0.60 2.50 16 16 C -0.45 -11.81 9.05 -37.74 -0.34 -12.15 16 17 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 18 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.78 -19.80 10.94 55.55 0.61 -19.19 16 20 Si 0.91 18.14 29.60 -169.99 -5.03 13.10 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 25 C -0.06 -1.43 9.67 -39.66 -0.38 -1.81 16 26 C 0.28 3.54 6.74 -83.61 -0.56 2.98 16 27 N -0.86 -9.70 8.15 32.55 0.27 -9.44 16 28 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.40 7.46 -51.93 -0.39 0.01 16 31 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 32 H 0.07 0.49 7.24 -51.93 -0.38 0.12 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.14 1.97 7.63 -52.49 -0.40 1.57 16 36 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 37 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 38 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 39 H 0.12 3.17 6.12 -52.49 -0.32 2.84 16 40 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 41 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 42 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 43 H 0.41 5.26 6.10 -40.82 -0.25 5.01 16 44 H 0.39 3.39 6.84 -40.82 -0.28 3.11 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -28.36 370.35 -10.28 -38.64 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -5.78 Total: 12.83 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -5.28 Total: -24.74 kcal Atomic # 7 Polarization: -29.50 SS G_CDS: 0.87 Total: -28.63 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.65 Total: -16.80 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.36 -10.28 -38.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785286912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.264 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds