Wall clock time and date at job start Tue Mar 31 2020 14:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46674 * 2 1 4 4 C 1.37994 * 119.96582 * 264.99278 * 3 2 1 5 5 C 1.38580 * 120.43669 * 179.97438 * 4 3 2 6 6 C 1.37765 * 120.36247 * 359.97438 * 5 4 3 7 7 C 1.39757 * 119.92088 * 0.02562 * 6 5 4 8 8 C 1.47289 * 120.21659 * 180.02562 * 7 6 5 9 9 O 1.21518 * 120.00487 * 173.79878 * 8 7 6 10 10 O 1.34769 * 120.00065 * 353.79476 * 8 7 6 11 11 C 1.45202 * 117.00641 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47515 * 179.97438 * 11 10 8 13 13 C 1.38625 * 119.75150 * 269.73143 * 12 11 10 14 14 C 1.37618 * 120.24698 * 179.72200 * 13 12 11 15 15 C 1.40714 * 119.74588 * 0.56907 * 14 13 12 16 16 C 1.41393 * 120.24653 * 179.68532 * 15 14 13 17 17 H 1.08003 * 120.00004 * 203.66715 * 16 15 14 18 18 C 1.39948 * 119.99902 * 23.66632 * 16 15 14 19 19 N 1.30820 * 120.00003 * 18.36349 * 18 16 15 20 20 Si 1.86804 * 119.99780 * 198.36058 * 18 16 15 21 21 H 1.48500 * 109.47245 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46742 * 120.00454 * 20 18 16 23 23 H 1.48500 * 109.47199 * 239.99878 * 20 18 16 24 24 C 1.40713 * 119.51153 * 359.69956 * 15 14 13 25 25 C 1.37614 * 119.74482 * 0.02562 * 24 15 14 26 26 C 1.38921 * 119.97057 * 84.97757 * 3 2 1 27 27 N 1.38841 * 120.17739 * 0.03560 * 26 3 2 28 28 H 1.09008 * 109.46884 * 60.00619 * 1 2 3 29 29 H 1.08997 * 109.46842 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47538 * 300.00648 * 1 2 3 31 31 H 1.08998 * 109.47165 * 239.99977 * 2 1 3 32 32 H 1.09001 * 109.46682 * 119.99057 * 2 1 3 33 33 H 1.07998 * 119.78116 * 0.26036 * 4 3 2 34 34 H 1.08003 * 119.82070 * 179.97438 * 5 4 3 35 35 H 1.07998 * 120.03907 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46706 * 299.99971 * 11 10 8 37 37 H 1.09006 * 109.46665 * 59.99503 * 11 10 8 38 38 H 1.08004 * 119.87755 * 359.97179 * 13 12 11 39 39 H 1.08002 * 120.12578 * 180.27539 * 14 13 12 40 40 H 0.97002 * 119.99570 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.13078 * 179.97438 * 24 15 14 42 42 H 1.08006 * 119.88057 * 180.02562 * 25 24 15 43 43 H 0.96998 * 120.00359 * 156.14865 * 27 26 3 44 44 H 0.97003 * 119.99754 * 336.14949 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3603 2.0359 -1.1909 5 6 2.8226 3.3423 -1.2023 6 6 2.9595 4.0428 -0.0240 7 6 2.6316 3.4345 1.1908 8 6 2.7750 4.1776 2.4544 9 8 2.3840 3.6875 3.4953 10 8 3.3400 5.4011 2.4562 11 6 3.4493 6.0750 3.7378 12 6 4.1016 7.4196 3.5444 13 6 5.4803 7.5343 3.6324 14 6 6.0872 8.7562 3.4519 15 6 5.3018 9.8938 3.1889 16 6 5.9138 11.1556 3.0083 17 1 5.3502 12.0595 3.1864 18 6 7.2498 11.2331 2.5988 19 7 7.8247 10.1977 2.0431 20 14 8.2120 12.8151 2.8456 21 1 7.3402 13.8291 3.4914 22 1 9.3877 12.5491 3.7130 23 1 8.6732 13.3244 1.5292 24 6 3.9028 9.7665 3.1074 25 6 3.3179 8.5336 3.2856 26 6 2.1642 2.1103 1.1988 27 7 1.8352 1.4936 2.3985 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 2.2518 1.4972 -2.1206 34 1 3.0769 3.8139 -2.1401 35 1 3.3207 5.0605 -0.0389 36 1 2.4547 6.2110 4.1626 37 1 4.0543 5.4720 4.4149 38 1 6.0808 6.6608 3.8394 39 1 7.1618 8.8425 3.5165 40 1 8.7506 10.2516 1.7590 41 1 3.2904 10.6331 2.9064 42 1 2.2443 8.4333 3.2231 43 1 2.2296 1.8050 3.2281 44 1 1.2109 0.7512 2.4069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785286912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:23 Heat of formation + Delta-G solvation = -68.318404 kcal Electronic energy + Delta-G solvation = -25898.626055 eV Core-core repulsion = 22165.140644 eV Total energy + Delta-G solvation = -3733.485412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72394 -40.25991 -39.40691 -37.51018 -35.84447 -35.58770 -34.57675 -32.65410 -31.27247 -31.07486 -29.43911 -28.89904 -25.98182 -25.00051 -24.38105 -22.96995 -22.13225 -21.91340 -21.60136 -19.28907 -18.57850 -18.16880 -17.99638 -17.66804 -17.29774 -17.09063 -16.16094 -15.71627 -15.62074 -15.39800 -15.22183 -15.05117 -14.54165 -14.42344 -14.30301 -13.96253 -13.90074 -13.82131 -13.54064 -13.03755 -12.94472 -12.84858 -12.74008 -12.68572 -12.60193 -12.10460 -11.93916 -11.82431 -11.70567 -11.61160 -11.49157 -11.31848 -11.18471 -11.04037 -9.84742 -9.46111 -9.35633 -8.70344 -8.59728 -6.40800 -0.19070 0.57202 0.71837 1.09368 1.37919 1.42710 1.54176 1.55102 1.95426 2.18991 2.71028 2.84244 2.96036 3.63108 3.75483 3.83758 4.03973 4.07648 4.09442 4.29175 4.32330 4.41495 4.46375 4.52841 4.54295 4.56636 4.62428 4.75148 4.98712 5.04447 5.09141 5.10613 5.11036 5.28843 5.29193 5.37587 5.41505 5.42788 5.52145 5.61186 5.63282 5.86445 5.91490 6.04098 6.13145 6.30007 6.47583 6.62745 6.77311 6.86980 6.90466 6.95622 8.26327 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024519 B = 0.002279 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.699180 B =12285.566214 C =12888.704082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 C -0.174 4.174 4 C -0.032 4.032 5 C -0.186 4.186 6 C -0.037 4.037 7 C -0.234 4.234 8 C 0.507 3.493 9 O -0.545 6.545 10 O -0.358 6.358 11 C 0.143 3.857 12 C -0.231 4.231 13 C -0.080 4.080 14 C -0.195 4.195 15 C 0.087 3.913 16 C -0.490 4.490 17 H 0.080 0.920 18 C 0.034 3.966 19 N -0.816 5.816 20 Si 0.986 3.014 21 H -0.257 1.257 22 H -0.264 1.264 23 H -0.264 1.264 24 C -0.245 4.245 25 C -0.065 4.065 26 C 0.271 3.729 27 N -0.855 5.855 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.147 0.853 35 H 0.123 0.877 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.291 0.709 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.406 0.594 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.323 -18.410 -6.346 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.178 4.178 4 C -0.050 4.050 5 C -0.206 4.206 6 C -0.055 4.055 7 C -0.240 4.240 8 C 0.357 3.643 9 O -0.438 6.438 10 O -0.274 6.274 11 C 0.070 3.930 12 C -0.232 4.232 13 C -0.098 4.098 14 C -0.214 4.214 15 C 0.085 3.915 16 C -0.519 4.519 17 H 0.098 0.902 18 C -0.182 4.182 19 N -0.441 5.441 20 Si 0.806 3.194 21 H -0.180 1.180 22 H -0.188 1.188 23 H -0.189 1.189 24 C -0.265 4.265 25 C -0.083 4.083 26 C 0.161 3.839 27 N -0.400 5.400 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.178 0.822 34 H 0.165 0.835 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.134 0.866 43 H 0.241 0.759 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -9.199 -18.570 -6.103 21.604 hybrid contribution 0.552 0.902 0.723 1.281 sum -8.647 -17.668 -5.380 20.393 Atomic orbital electron populations 1.21795 0.94462 1.02528 1.01834 1.20419 0.96179 0.90442 1.03985 1.19799 1.08709 0.98200 0.91096 1.21457 0.91726 0.93846 0.98019 1.21174 1.05584 0.95878 0.97966 1.21365 0.93049 0.99633 0.91499 1.18854 1.19589 0.94263 0.91314 1.21499 0.73497 0.79846 0.89474 1.90547 1.49261 1.68996 1.35020 1.86744 1.72482 1.30085 1.38137 1.21565 1.00119 0.89757 0.81528 1.18969 0.93371 0.92853 1.18037 1.20761 0.93900 0.96618 0.98562 1.21278 0.99456 0.93066 1.07601 1.18048 0.92087 0.93864 0.87529 1.19955 0.97090 0.93650 1.41197 0.90152 1.26860 0.98377 1.01800 0.91189 1.69884 1.14256 1.33127 1.26875 0.85107 0.77983 0.77147 0.79179 1.18014 1.18813 1.18886 1.21165 0.94729 0.97062 1.13496 1.20698 0.98381 0.92338 0.96899 1.17663 0.89983 0.88113 0.88176 1.42907 1.51250 1.38927 1.06937 0.92364 0.90745 0.93798 0.88888 0.91023 0.82207 0.83489 0.85855 0.91000 0.91372 0.87758 0.87640 0.89822 0.87857 0.86626 0.75852 0.76215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.81 71.98 0.71 -0.86 16 2 C -0.07 -0.86 5.43 29.85 0.16 -0.69 16 3 C -0.17 -3.16 5.15 -19.76 -0.10 -3.26 16 4 C -0.03 -0.52 9.66 22.29 0.22 -0.31 16 5 C -0.19 -3.79 10.02 22.24 0.22 -3.57 16 6 C -0.04 -1.00 9.61 22.53 0.22 -0.78 16 7 C -0.23 -6.98 5.89 -19.99 -0.12 -7.09 16 8 C 0.51 17.85 7.86 70.20 0.55 18.40 16 9 O -0.54 -19.53 13.61 19.78 0.27 -19.26 16 10 O -0.36 -13.93 9.47 -56.80 -0.54 -14.47 16 11 C 0.14 5.51 5.59 71.23 0.40 5.91 16 12 C -0.23 -10.36 5.54 -19.68 -0.11 -10.46 16 13 C -0.08 -3.84 9.67 22.22 0.21 -3.63 16 14 C -0.19 -10.42 8.71 22.73 0.20 -10.22 16 15 C 0.09 4.76 5.58 -21.29 -0.12 4.64 16 16 C -0.49 -26.32 9.05 23.46 0.21 -26.11 16 17 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 18 C 0.03 1.69 5.14 85.26 0.44 2.13 16 19 N -0.82 -42.42 10.94 21.83 0.24 -42.18 16 20 Si 0.99 37.55 29.60 68.60 2.03 39.58 16 21 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 22 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 23 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 24 C -0.25 -12.21 9.80 22.73 0.22 -11.98 16 25 C -0.06 -2.94 9.67 22.22 0.21 -2.72 16 26 C 0.27 6.57 6.74 38.73 0.26 6.83 16 27 N -0.86 -18.41 8.15 -50.93 -0.41 -18.82 16 28 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.04 0.55 7.46 -2.39 -0.02 0.53 16 31 H 0.09 0.77 8.05 -2.39 -0.02 0.75 16 32 H 0.07 0.81 7.24 -2.39 -0.02 0.80 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.12 3.65 7.63 -2.91 -0.02 3.63 16 36 H 0.07 2.60 8.08 -2.39 -0.02 2.58 16 37 H 0.07 2.51 8.07 -2.38 -0.02 2.49 16 38 H 0.10 4.55 8.06 -2.91 -0.02 4.52 16 39 H 0.11 5.85 6.12 -2.91 -0.02 5.83 16 40 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 41 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 42 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 43 H 0.41 10.17 6.10 -92.71 -0.57 9.61 16 44 H 0.41 6.36 6.84 -92.71 -0.63 5.73 16 Total: -1.00 -63.30 370.35 5.21 -58.09 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -0.16 Total: 40.85 kcal Atomic # 6 Polarization: -47.58 SS G_CDS: 3.79 Total: -43.79 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.18 Total: -61.00 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.27 Total: -33.72 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -63.30 5.21 -58.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785286912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.230 kcal (2) G-P(sol) polarization free energy of solvation -63.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds