Wall clock time and date at job start Tue Mar 31 2020 14:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47068 * 2 1 4 4 C 1.38635 * 119.81922 * 90.00074 * 3 2 1 5 5 C 1.37951 * 120.43485 * 180.02562 * 4 3 2 6 6 C 1.38953 * 120.07158 * 359.97438 * 5 4 3 7 7 N 1.38837 * 120.18216 * 179.97438 * 6 5 4 8 8 C 1.40408 * 119.63954 * 359.97438 * 6 5 4 9 9 C 1.47298 * 120.21161 * 180.02562 * 8 6 5 10 10 O 1.21521 * 120.00140 * 6.28595 * 9 8 6 11 11 O 1.34761 * 119.99657 * 186.28588 * 9 8 6 12 12 C 1.45200 * 116.99819 * 180.02562 * 11 9 8 13 13 C 1.50708 * 109.47313 * 179.97438 * 12 11 9 14 14 C 1.38624 * 119.74986 * 269.73271 * 13 12 11 15 15 C 1.37622 * 120.24628 * 179.72081 * 14 13 12 16 16 C 1.40715 * 119.74415 * 0.56499 * 15 14 13 17 17 C 1.41400 * 120.24708 * 179.68396 * 16 15 14 18 18 H 1.07990 * 120.00001 * 153.13013 * 17 16 15 19 19 C 1.39946 * 119.99419 * 333.12544 * 17 16 15 20 20 N 1.30823 * 120.00679 * 343.07478 * 19 17 16 21 21 Si 1.86800 * 119.99625 * 163.07378 * 19 17 16 22 22 H 1.48503 * 109.47171 * 94.97182 * 21 19 17 23 23 H 1.48496 * 109.47489 * 214.97412 * 21 19 17 24 24 H 1.48505 * 109.47303 * 334.97624 * 21 19 17 25 25 C 1.40720 * 119.51132 * 359.70702 * 16 15 14 26 26 C 1.37616 * 119.74112 * 359.97438 * 25 16 15 27 27 C 1.37729 * 119.82125 * 270.25562 * 3 2 1 28 28 H 1.08996 * 109.47047 * 300.00096 * 1 2 3 29 29 H 1.09004 * 109.47121 * 60.00009 * 1 2 3 30 30 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46947 * 240.00401 * 2 1 3 32 32 H 1.08995 * 109.47276 * 119.99962 * 2 1 3 33 33 H 1.08001 * 119.77834 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.95861 * 179.97438 * 5 4 3 35 35 H 0.97002 * 120.00096 * 201.08962 * 7 6 5 36 36 H 0.97001 * 120.00010 * 21.08269 * 7 6 5 37 37 H 1.08997 * 109.47289 * 300.00089 * 12 11 9 38 38 H 1.08999 * 109.47194 * 60.00041 * 12 11 9 39 39 H 1.08003 * 119.88072 * 359.97103 * 14 13 12 40 40 H 1.08002 * 120.12995 * 180.27699 * 15 14 13 41 41 H 0.96998 * 120.00328 * 180.02562 * 20 19 17 42 42 H 1.08001 * 120.12478 * 179.97438 * 25 16 15 43 43 H 1.08002 * 119.87158 * 179.97438 * 26 25 16 44 44 H 1.07996 * 120.04180 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0707 1.2028 5 6 2.7214 3.3715 1.2176 6 6 2.9578 4.0400 0.0227 7 7 3.4195 5.3493 0.0349 8 6 2.7271 3.3844 -1.1973 9 6 2.9740 4.0810 -2.4714 10 8 3.4854 5.1833 -2.4721 11 8 2.6326 3.4958 -3.6364 12 6 2.9057 4.2401 -4.8528 13 6 2.4607 3.4338 -6.0458 14 6 3.3495 2.5640 -6.6585 15 6 2.9522 1.8186 -7.7449 16 6 1.6420 1.9507 -8.2408 17 6 1.2246 1.1949 -9.3606 18 1 0.1810 0.9470 -9.4862 19 6 2.1640 0.7682 -10.3061 20 7 3.3468 1.3252 -10.3507 21 14 1.7288 -0.5969 -11.5047 22 1 1.2437 -0.0031 -12.7764 23 1 2.9331 -1.4235 -11.7721 24 1 0.6634 -1.4494 -10.9185 25 6 0.7502 2.8409 -7.6143 26 6 1.1672 3.5713 -6.5251 27 6 2.2556 2.0683 -1.1949 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0803 1.5553 2.1343 34 1 2.8975 3.8706 2.1591 35 1 3.2984 5.9137 -0.7447 36 1 3.8632 5.6998 0.8231 37 1 2.3634 5.1853 -4.8299 38 1 3.9754 4.4366 -4.9261 39 1 4.3562 2.4681 -6.2793 40 1 3.6448 1.1382 -8.2181 41 1 3.9977 1.0297 -11.0063 42 1 -0.2576 2.9503 -7.9869 43 1 0.4847 4.2555 -6.0430 44 1 2.0705 1.5586 -2.1289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785321957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:48 Heat of formation + Delta-G solvation = -57.939492 kcal Electronic energy + Delta-G solvation = -25937.414006 eV Core-core repulsion = 22204.378658 eV Total energy + Delta-G solvation = -3733.035348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.50061 -39.02022 -37.64781 -36.31632 -35.20435 -33.84838 -32.53520 -31.55604 -30.61056 -29.37621 -28.10864 -27.17553 -24.53088 -23.55590 -23.43399 -21.79242 -21.08528 -20.15826 -20.04508 -17.61828 -17.37787 -17.09872 -16.81206 -16.38515 -15.89861 -15.33149 -14.91217 -14.66457 -14.24126 -13.98626 -13.83540 -13.75275 -13.54374 -13.37276 -12.93127 -12.68001 -12.46736 -12.27072 -12.14718 -12.02600 -11.74155 -11.55516 -11.27185 -11.15903 -11.10695 -10.96624 -10.62515 -10.60926 -10.43192 -10.14451 -10.05951 -9.67434 -9.46167 -9.22538 -9.10318 -7.64969 -7.55548 -7.44011 -6.85661 -4.45912 0.81306 1.44700 2.45768 2.71206 2.96394 3.00580 3.03413 3.08851 3.42887 3.78119 3.83427 3.87040 4.52771 4.66845 4.71438 4.93710 5.03191 5.28270 5.30853 5.36572 5.42189 5.61123 5.62378 5.68264 5.72836 5.79042 5.85699 5.97234 6.02201 6.14761 6.16438 6.19752 6.25538 6.31809 6.55381 6.69911 6.84154 6.87966 6.99095 7.17382 7.25751 7.37458 7.52343 7.72781 7.78759 7.96323 8.00178 8.10665 8.19808 8.54216 8.79306 8.86880 10.09497 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.002625 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.076379 B =10662.485752 C =11906.042329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.077 4.077 3 C -0.156 4.156 4 C -0.037 4.037 5 C -0.211 4.211 6 C 0.273 3.727 7 N -0.861 5.861 8 C -0.205 4.205 9 C 0.512 3.488 10 O -0.533 6.533 11 O -0.344 6.344 12 C 0.137 3.863 13 C -0.233 4.233 14 C -0.075 4.075 15 C -0.167 4.167 16 C 0.120 3.880 17 C -0.459 4.459 18 H 0.080 0.920 19 C 0.076 3.924 20 N -0.789 5.789 21 Si 0.909 3.091 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.228 4.228 26 C -0.064 4.064 27 C -0.010 4.010 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.414 0.586 36 H 0.394 0.606 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.282 0.718 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.795 0.324 19.476 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.158 4.158 4 C -0.056 4.056 5 C -0.233 4.233 6 C 0.163 3.837 7 N -0.406 5.406 8 C -0.211 4.211 9 C 0.360 3.640 10 O -0.426 6.426 11 O -0.260 6.260 12 C 0.065 3.935 13 C -0.234 4.234 14 C -0.094 4.094 15 C -0.186 4.186 16 C 0.118 3.882 17 C -0.488 4.488 18 H 0.098 0.902 19 C -0.143 4.143 20 N -0.413 5.413 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.248 4.248 26 C -0.083 4.083 27 C -0.029 4.029 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.252 0.748 36 H 0.222 0.778 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.135 0.865 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.439 0.654 19.208 19.224 hybrid contribution 0.148 0.009 -0.659 0.675 sum -0.291 0.663 18.549 18.563 Atomic orbital electron populations 1.21786 0.95072 1.01536 1.02202 1.20419 0.95946 0.92322 1.02712 1.19614 1.06233 0.97426 0.92573 1.20976 0.93677 0.93370 0.97572 1.20610 1.10012 0.96716 0.95973 1.17677 0.89003 0.85045 0.91968 1.42995 1.64951 1.10851 1.21835 1.18774 1.16854 0.96251 0.89269 1.21020 0.74416 0.83573 0.84958 1.90548 1.42838 1.21368 1.87853 1.86765 1.75040 1.49457 1.14726 1.21724 0.99744 0.93046 0.79012 1.18663 0.96294 1.08939 0.99539 1.20537 0.96904 0.95806 0.96162 1.21246 0.97932 1.02484 0.96985 1.17684 0.91397 0.88434 0.90716 1.19651 0.95350 1.28947 1.04839 0.90189 1.25951 0.94297 0.95951 0.98087 1.69817 1.05677 1.34781 1.31071 0.86288 0.79360 0.80988 0.80073 1.19501 1.19947 1.18313 1.20974 1.00006 1.02477 1.01319 1.20391 0.93906 0.97965 0.95990 1.21236 0.90950 0.91972 0.98692 0.92861 0.92298 0.92605 0.90920 0.91412 0.85812 0.85569 0.74833 0.77778 0.92090 0.91991 0.89307 0.86525 0.90684 0.88693 0.89309 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.92 16 2 C -0.08 -0.69 6.05 -27.88 -0.17 -0.86 16 3 C -0.16 -1.70 5.13 -104.66 -0.54 -2.24 16 4 C -0.04 -0.35 9.67 -39.54 -0.38 -0.73 16 5 C -0.21 -2.09 9.91 -39.42 -0.39 -2.48 16 6 C 0.27 3.37 6.76 -83.61 -0.57 2.80 16 7 N -0.86 -9.45 8.58 32.55 0.28 -9.17 16 8 C -0.21 -2.98 5.89 -104.81 -0.62 -3.60 16 9 C 0.51 8.77 7.86 34.41 0.27 9.04 16 10 O -0.53 -9.48 13.57 -19.28 -0.26 -9.74 16 11 O -0.34 -6.45 9.47 -40.66 -0.39 -6.84 16 12 C 0.14 2.64 5.59 36.01 0.20 2.84 16 13 C -0.23 -5.17 5.54 -104.33 -0.58 -5.74 16 14 C -0.08 -1.76 9.67 -39.66 -0.38 -2.15 16 15 C -0.17 -4.28 8.68 -38.87 -0.34 -4.62 16 16 C 0.12 3.16 5.55 -106.82 -0.59 2.56 16 17 C -0.46 -11.90 9.05 -37.74 -0.34 -12.24 16 18 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 19 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 20 N -0.79 -19.98 11.07 55.55 0.61 -19.37 16 21 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 25 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 26 C -0.06 -1.44 9.67 -39.66 -0.38 -1.82 16 27 C -0.01 -0.13 9.25 -39.19 -0.36 -0.49 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.41 5.22 5.96 -40.82 -0.24 4.98 16 36 H 0.39 3.09 8.89 -40.82 -0.36 2.72 16 37 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 38 H 0.06 1.16 8.07 -51.93 -0.42 0.75 16 39 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 40 H 0.12 3.07 6.31 -52.49 -0.33 2.74 16 41 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 42 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.14 1.90 7.62 -52.49 -0.40 1.50 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -28.32 374.71 -10.35 -38.67 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -5.95 Total: 12.45 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -5.27 Total: -24.80 kcal Atomic # 7 Polarization: -29.43 SS G_CDS: 0.89 Total: -28.54 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.65 Total: -16.58 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.32 -10.35 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785321957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.269 kcal (2) G-P(sol) polarization free energy of solvation -28.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds