Wall clock time and date at job start Tue Mar 31 2020 14:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47068 * 2 1 4 4 C 1.38635 * 119.81922 * 90.00074 * 3 2 1 5 5 C 1.37951 * 120.43485 * 180.02562 * 4 3 2 6 6 C 1.38953 * 120.07158 * 359.97438 * 5 4 3 7 7 N 1.38837 * 120.18216 * 179.97438 * 6 5 4 8 8 C 1.40408 * 119.63954 * 359.97438 * 6 5 4 9 9 C 1.47298 * 120.21161 * 180.02562 * 8 6 5 10 10 O 1.21521 * 120.00140 * 6.28595 * 9 8 6 11 11 O 1.34761 * 119.99657 * 186.28588 * 9 8 6 12 12 C 1.45200 * 116.99819 * 180.02562 * 11 9 8 13 13 C 1.50708 * 109.47313 * 179.97438 * 12 11 9 14 14 C 1.38624 * 119.74986 * 269.73271 * 13 12 11 15 15 C 1.37622 * 120.24628 * 179.72081 * 14 13 12 16 16 C 1.40715 * 119.74415 * 0.56499 * 15 14 13 17 17 C 1.41400 * 120.24708 * 179.68396 * 16 15 14 18 18 H 1.07990 * 120.00001 * 153.13013 * 17 16 15 19 19 C 1.39946 * 119.99419 * 333.12544 * 17 16 15 20 20 N 1.30823 * 120.00679 * 343.07478 * 19 17 16 21 21 Si 1.86800 * 119.99625 * 163.07378 * 19 17 16 22 22 H 1.48503 * 109.47171 * 94.97182 * 21 19 17 23 23 H 1.48496 * 109.47489 * 214.97412 * 21 19 17 24 24 H 1.48505 * 109.47303 * 334.97624 * 21 19 17 25 25 C 1.40720 * 119.51132 * 359.70702 * 16 15 14 26 26 C 1.37616 * 119.74112 * 359.97438 * 25 16 15 27 27 C 1.37729 * 119.82125 * 270.25562 * 3 2 1 28 28 H 1.08996 * 109.47047 * 300.00096 * 1 2 3 29 29 H 1.09004 * 109.47121 * 60.00009 * 1 2 3 30 30 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46947 * 240.00401 * 2 1 3 32 32 H 1.08995 * 109.47276 * 119.99962 * 2 1 3 33 33 H 1.08001 * 119.77834 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.95861 * 179.97438 * 5 4 3 35 35 H 0.97002 * 120.00096 * 201.08962 * 7 6 5 36 36 H 0.97001 * 120.00010 * 21.08269 * 7 6 5 37 37 H 1.08997 * 109.47289 * 300.00089 * 12 11 9 38 38 H 1.08999 * 109.47194 * 60.00041 * 12 11 9 39 39 H 1.08003 * 119.88072 * 359.97103 * 14 13 12 40 40 H 1.08002 * 120.12995 * 180.27699 * 15 14 13 41 41 H 0.96998 * 120.00328 * 180.02562 * 20 19 17 42 42 H 1.08001 * 120.12478 * 179.97438 * 25 16 15 43 43 H 1.08002 * 119.87158 * 179.97438 * 26 25 16 44 44 H 1.07996 * 120.04180 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0707 1.2028 5 6 2.7214 3.3715 1.2176 6 6 2.9578 4.0400 0.0227 7 7 3.4195 5.3493 0.0349 8 6 2.7271 3.3844 -1.1973 9 6 2.9740 4.0810 -2.4714 10 8 3.4854 5.1833 -2.4721 11 8 2.6326 3.4958 -3.6364 12 6 2.9057 4.2401 -4.8528 13 6 2.4607 3.4338 -6.0458 14 6 3.3495 2.5640 -6.6585 15 6 2.9522 1.8186 -7.7449 16 6 1.6420 1.9507 -8.2408 17 6 1.2246 1.1949 -9.3606 18 1 0.1810 0.9470 -9.4862 19 6 2.1640 0.7682 -10.3061 20 7 3.3468 1.3252 -10.3507 21 14 1.7288 -0.5969 -11.5047 22 1 1.2437 -0.0031 -12.7764 23 1 2.9331 -1.4235 -11.7721 24 1 0.6634 -1.4494 -10.9185 25 6 0.7502 2.8409 -7.6143 26 6 1.1672 3.5713 -6.5251 27 6 2.2556 2.0683 -1.1949 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0803 1.5553 2.1343 34 1 2.8975 3.8706 2.1591 35 1 3.2984 5.9137 -0.7447 36 1 3.8632 5.6998 0.8231 37 1 2.3634 5.1853 -4.8299 38 1 3.9754 4.4366 -4.9261 39 1 4.3562 2.4681 -6.2793 40 1 3.6448 1.1382 -8.2181 41 1 3.9977 1.0297 -11.0063 42 1 -0.2576 2.9503 -7.9869 43 1 0.4847 4.2555 -6.0430 44 1 2.0705 1.5586 -2.1289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785321957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:47 Heat of formation + Delta-G solvation = -70.463956 kcal Electronic energy + Delta-G solvation = -25937.957108 eV Core-core repulsion = 22204.378658 eV Total energy + Delta-G solvation = -3733.578450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.70076 -40.14447 -39.40172 -37.63390 -36.19769 -35.66614 -33.38515 -32.76472 -32.10367 -31.26069 -29.11535 -28.74543 -25.98773 -24.82891 -24.28824 -22.99368 -22.83159 -21.84761 -21.19890 -19.27655 -18.77143 -18.12515 -17.81202 -17.59665 -17.34531 -17.04276 -16.16531 -15.71870 -15.61398 -15.44392 -15.28185 -14.81867 -14.51842 -14.40926 -14.20841 -13.98067 -13.91303 -13.88009 -13.47062 -13.30479 -13.06978 -12.95802 -12.79088 -12.62339 -12.41744 -12.22768 -11.92182 -11.70434 -11.68953 -11.55358 -11.40019 -11.30400 -11.11586 -11.04798 -10.01249 -9.45492 -9.34497 -8.69505 -8.52391 -6.41039 -0.17726 0.57387 0.71328 1.08397 1.38142 1.42845 1.53750 1.54985 1.95481 2.19551 2.71960 2.84291 2.97808 3.61732 3.75513 3.92815 3.96555 4.06280 4.08034 4.28434 4.35134 4.44979 4.49013 4.51413 4.53885 4.63667 4.65876 4.86738 4.97884 5.03183 5.11309 5.14760 5.19041 5.22710 5.26836 5.36030 5.37496 5.42696 5.47850 5.63498 5.73962 5.85193 5.91884 6.03909 6.11314 6.30167 6.48230 6.62307 6.76986 6.87419 6.94373 6.95038 8.28551 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.002625 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.076379 B =10662.485752 C =11906.042329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.156 4.156 4 C -0.026 4.026 5 C -0.202 4.202 6 C 0.265 3.735 7 N -0.857 5.857 8 C -0.235 4.235 9 C 0.507 3.493 10 O -0.546 6.546 11 O -0.356 6.356 12 C 0.143 3.857 13 C -0.228 4.228 14 C -0.081 4.081 15 C -0.189 4.189 16 C 0.090 3.910 17 C -0.495 4.495 18 H 0.080 0.920 19 C 0.035 3.965 20 N -0.822 5.822 21 Si 0.984 3.016 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.257 1.257 25 C -0.242 4.242 26 C -0.066 4.066 27 C -0.028 4.028 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.406 0.594 36 H 0.409 0.591 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.290 0.710 42 H 0.104 0.896 43 H 0.116 0.884 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -0.115 22.205 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.158 4.158 4 C -0.044 4.044 5 C -0.224 4.224 6 C 0.155 3.845 7 N -0.402 5.402 8 C -0.241 4.241 9 C 0.357 3.643 10 O -0.440 6.440 11 O -0.272 6.272 12 C 0.070 3.930 13 C -0.229 4.229 14 C -0.099 4.099 15 C -0.208 4.208 16 C 0.088 3.912 17 C -0.524 4.524 18 H 0.098 0.902 19 C -0.180 4.180 20 N -0.447 5.447 21 Si 0.804 3.196 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.181 1.181 25 C -0.261 4.261 26 C -0.084 4.084 27 C -0.047 4.047 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.179 0.821 34 H 0.177 0.823 35 H 0.242 0.758 36 H 0.240 0.760 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.122 0.878 43 H 0.134 0.866 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.757 0.234 21.975 21.989 hybrid contribution 0.267 0.231 -1.282 1.330 sum -0.490 0.464 20.693 20.704 Atomic orbital electron populations 1.21773 0.94803 1.02143 1.01741 1.20470 0.96110 0.91338 1.03454 1.19861 1.05481 0.98199 0.92293 1.21412 0.91567 0.93138 0.98307 1.21000 1.08471 0.96804 0.96152 1.17919 0.89057 0.85514 0.92045 1.42972 1.64686 1.10335 1.22172 1.18795 1.19667 0.97018 0.88667 1.21538 0.74068 0.83647 0.85071 1.90533 1.43629 1.21894 1.87950 1.86727 1.75650 1.49735 1.15137 1.21538 1.00046 0.92793 0.78604 1.18965 0.95939 1.07877 1.00115 1.20757 0.97978 0.95603 0.95595 1.21206 0.97932 1.03515 0.98147 1.18035 0.92134 0.89459 0.91607 1.19905 0.95914 1.30709 1.05842 0.90178 1.26818 0.93888 0.97789 0.99549 1.69866 1.06710 1.35998 1.32140 0.85164 0.79246 0.77600 0.77564 1.18621 1.19001 1.18089 1.21185 1.00330 1.02626 1.01999 1.20695 0.94508 0.97816 0.95367 1.21182 0.92417 0.91896 0.99191 0.91805 0.94248 0.91514 0.91903 0.88978 0.82089 0.82300 0.75785 0.75979 0.90949 0.91617 0.87756 0.88054 0.89909 0.87805 0.86557 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.89 71.98 0.71 -1.59 16 2 C -0.08 -1.23 6.05 29.85 0.18 -1.05 16 3 C -0.16 -3.10 5.13 -19.89 -0.10 -3.21 16 4 C -0.03 -0.39 9.67 22.30 0.22 -0.17 16 5 C -0.20 -3.28 9.91 22.37 0.22 -3.06 16 6 C 0.27 6.08 6.76 38.73 0.26 6.34 16 7 N -0.86 -17.42 8.58 -50.93 -0.44 -17.86 16 8 C -0.24 -6.78 5.89 -19.99 -0.12 -6.90 16 9 C 0.51 17.52 7.86 70.21 0.55 18.07 16 10 O -0.55 -19.44 13.57 19.77 0.27 -19.17 16 11 O -0.36 -13.56 9.47 -56.72 -0.54 -14.10 16 12 C 0.14 5.50 5.59 71.24 0.40 5.90 16 13 C -0.23 -10.18 5.54 -19.68 -0.11 -10.29 16 14 C -0.08 -3.88 9.67 22.22 0.21 -3.67 16 15 C -0.19 -10.08 8.68 22.73 0.20 -9.88 16 16 C 0.09 4.91 5.55 -21.29 -0.12 4.79 16 17 C -0.49 -26.60 9.05 23.46 0.21 -26.39 16 18 H 0.08 4.12 7.90 -2.92 -0.02 4.10 16 19 C 0.04 1.76 5.14 85.26 0.44 2.20 16 20 N -0.82 -42.87 11.07 21.83 0.24 -42.63 16 21 Si 0.98 37.71 29.59 68.60 2.03 39.74 16 22 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 23 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 25 C -0.24 -12.01 9.80 22.73 0.22 -11.79 16 26 C -0.07 -2.96 9.67 22.22 0.21 -2.74 16 27 C -0.03 -0.74 9.25 22.53 0.21 -0.54 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16 32 H 0.09 1.05 8.08 -2.39 -0.02 1.03 16 33 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.41 9.92 5.96 -92.71 -0.55 9.36 16 36 H 0.41 5.47 8.89 -92.71 -0.82 4.65 16 37 H 0.07 2.61 8.08 -2.39 -0.02 2.59 16 38 H 0.07 2.47 8.07 -2.39 -0.02 2.45 16 39 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.10 5.62 6.31 -2.91 -0.02 5.60 16 41 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 42 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 43 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.12 3.51 7.62 -2.91 -0.02 3.49 16 Total: -1.00 -63.57 374.71 5.03 -58.54 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: -0.34 Total: 39.43 kcal Atomic # 6 Polarization: -47.76 SS G_CDS: 3.80 Total: -43.95 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.20 Total: -60.49 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.27 Total: -33.27 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Total: -63.57 5.03 -58.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785321957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.927 kcal (2) G-P(sol) polarization free energy of solvation -63.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds