Wall clock time and date at job start Tue Mar 31 2020 14:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50709 * 109.46900 * 2 1 4 4 C 1.38251 * 119.88487 * 264.99688 * 3 2 1 5 5 C 1.37971 * 120.23402 * 179.72048 * 4 3 2 6 6 C 1.39673 * 119.99434 * 0.28398 * 5 4 3 7 7 C 1.47744 * 120.11013 * 180.02562 * 6 5 4 8 8 O 1.21464 * 120.00321 * 179.97438 * 7 6 5 9 9 O 1.34713 * 119.99829 * 359.97438 * 7 6 5 10 10 C 1.45198 * 116.99646 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47093 * 180.02562 * 10 9 7 12 12 C 1.38634 * 119.74836 * 269.72909 * 11 10 9 13 13 C 1.37622 * 120.25123 * 179.72024 * 12 11 10 14 14 C 1.40719 * 119.74176 * 0.56876 * 13 12 11 15 15 C 1.41393 * 120.24436 * 179.67970 * 14 13 12 16 16 H 1.07995 * 119.99686 * 204.40170 * 15 14 13 17 17 C 1.39938 * 120.00006 * 24.40755 * 15 14 13 18 18 N 1.30829 * 120.00347 * 17.85500 * 17 15 14 19 19 Si 1.86804 * 119.99983 * 197.85367 * 17 15 14 20 20 H 1.48499 * 109.47006 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46965 * 119.99930 * 19 17 15 22 22 H 1.48501 * 109.47152 * 239.99763 * 19 17 15 23 23 C 1.40718 * 119.50775 * 359.70638 * 14 13 12 24 24 C 1.37612 * 119.74878 * 359.97438 * 23 14 13 25 25 C 1.39505 * 119.77474 * 359.97438 * 6 5 4 26 26 C 1.38666 * 119.76842 * 0.02562 * 25 6 5 27 27 N 1.39705 * 119.99994 * 179.97438 * 26 25 6 28 28 H 1.09001 * 109.47565 * 299.99821 * 1 2 3 29 29 H 1.09001 * 109.47438 * 60.00348 * 1 2 3 30 30 H 1.09002 * 109.46879 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47565 * 240.00178 * 2 1 3 32 32 H 1.09001 * 109.47438 * 119.99652 * 2 1 3 33 33 H 1.08001 * 119.88000 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.00259 * 180.29914 * 5 4 3 35 35 H 1.08997 * 109.47184 * 299.99936 * 10 9 7 36 36 H 1.09000 * 109.47219 * 60.00022 * 10 9 7 37 37 H 1.08000 * 119.87962 * 359.97438 * 12 11 10 38 38 H 1.07999 * 120.13434 * 180.27947 * 13 12 11 39 39 H 0.96996 * 120.00402 * 180.02562 * 18 17 15 40 40 H 1.08007 * 120.12201 * 179.97438 * 23 14 13 41 41 H 1.08001 * 119.87392 * 179.97438 * 24 23 14 42 42 H 1.08001 * 120.11393 * 179.97438 * 25 6 5 43 43 H 0.96997 * 120.00233 * 359.97438 * 27 26 25 44 44 H 0.97000 * 119.99947 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3604 2.0355 -1.1941 5 6 2.8155 3.3380 -1.2030 6 6 2.9516 4.0383 -0.0022 7 6 3.4381 5.4333 -0.0088 8 8 3.5554 6.0406 1.0366 9 8 3.7518 6.0317 -1.1742 10 6 4.2227 7.4035 -1.1050 11 6 4.5215 7.9028 -2.4951 12 6 5.7922 7.7417 -3.0256 13 6 6.0749 8.1886 -4.2961 14 6 5.0715 8.8218 -5.0528 15 6 5.3522 9.2911 -6.3567 16 1 4.7635 10.0909 -6.7810 17 6 6.3925 8.7190 -7.0974 18 7 6.8729 7.5508 -6.7564 19 14 7.0954 9.6232 -8.5732 20 1 6.3843 10.9153 -8.7467 21 1 8.5414 9.8802 -8.3535 22 1 6.9197 8.7933 -9.7920 23 6 3.7870 8.9849 -4.5019 24 6 3.5251 8.5243 -3.2319 25 6 2.6256 3.4164 1.2033 26 6 2.1691 2.1070 1.2010 27 7 1.8418 1.4793 2.4055 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2555 1.4958 -2.1237 34 1 3.0661 3.8161 -2.1384 35 1 3.4537 8.0292 -0.6521 36 1 5.1287 7.4465 -0.5005 37 1 6.5621 7.2600 -2.4411 38 1 7.0642 8.0580 -4.7092 39 1 7.5943 7.1545 -7.2696 40 1 3.0095 9.4699 -5.0737 41 1 2.5401 8.6488 -2.8069 42 1 2.7292 3.9526 2.1350 43 1 1.9342 1.9593 3.2433 44 1 1.5228 0.5633 2.4039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785354106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:29 Heat of formation + Delta-G solvation = -58.770886 kcal Electronic energy + Delta-G solvation = -25567.169497 eV Core-core repulsion = 21834.098097 eV Total energy + Delta-G solvation = -3733.071400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.37158 -39.30638 -37.63628 -35.97284 -34.90784 -33.94407 -33.83760 -30.84562 -30.04693 -29.34865 -28.76448 -27.16813 -25.06854 -23.68660 -22.51384 -21.95385 -21.06389 -20.40102 -20.00653 -17.93679 -17.37888 -17.37436 -16.51859 -15.90433 -15.77108 -15.51726 -15.25627 -14.45784 -14.29504 -14.01448 -13.82522 -13.79532 -13.75159 -13.57753 -12.95282 -12.70933 -12.41095 -12.32816 -12.14563 -12.00319 -11.72070 -11.62082 -11.23033 -11.18113 -11.12980 -10.96421 -10.82502 -10.76259 -10.43032 -10.23301 -10.09318 -9.67127 -9.45340 -9.20945 -8.93935 -7.69936 -7.54296 -7.43174 -6.85133 -4.44734 0.74328 1.47494 2.46550 2.76008 2.95354 3.02413 3.04589 3.09193 3.36675 3.70522 3.82435 3.87046 4.48940 4.57030 4.59816 4.87436 5.03541 5.07442 5.22248 5.29825 5.31216 5.55066 5.61334 5.64290 5.69510 5.70953 5.74299 5.79945 5.92826 6.03445 6.16859 6.28131 6.34089 6.40367 6.44012 6.65767 6.87013 6.90458 6.99238 7.20591 7.23607 7.28633 7.50195 7.53837 7.76235 7.97846 8.03452 8.13197 8.21195 8.55929 8.80422 8.88728 10.08612 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002264 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.116606 B =12364.576687 C =13271.992736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C -0.132 4.132 4 C -0.085 4.085 5 C -0.111 4.111 6 C -0.078 4.078 7 C 0.501 3.499 8 O -0.520 6.520 9 O -0.342 6.342 10 C 0.136 3.864 11 C -0.235 4.235 12 C -0.075 4.075 13 C -0.171 4.171 14 C 0.118 3.882 15 C -0.456 4.456 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.785 5.785 19 Si 0.909 3.091 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.230 4.230 24 C -0.063 4.063 25 C -0.134 4.134 26 C 0.203 3.797 27 N -0.879 5.879 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.282 0.718 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.133 0.867 43 H 0.398 0.602 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 -14.155 11.941 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.137 4.137 4 C -0.104 4.104 5 C -0.131 4.131 6 C -0.080 4.080 7 C 0.346 3.654 8 O -0.411 6.411 9 O -0.259 6.259 10 C 0.064 3.936 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.190 4.190 14 C 0.115 3.885 15 C -0.484 4.484 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.409 5.409 19 Si 0.733 3.267 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.250 4.250 24 C -0.082 4.082 25 C -0.157 4.157 26 C 0.100 3.900 27 N -0.420 5.420 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.151 0.849 43 H 0.226 0.774 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.788 -14.090 12.098 20.138 hybrid contribution 0.336 0.252 -0.275 0.502 sum -7.452 -13.838 11.823 19.667 Atomic orbital electron populations 1.21778 0.94780 1.01572 1.02534 1.20407 0.96056 0.92531 1.02690 1.19590 1.05292 0.96892 0.91938 1.20820 0.97900 0.94540 0.97100 1.21364 0.99443 0.94406 0.97928 1.18957 1.03383 0.91303 0.94318 1.21251 0.74503 0.87171 0.82444 1.90767 1.50827 1.65976 1.33541 1.86775 1.75187 1.31213 1.32689 1.21749 0.97973 0.77079 0.96763 1.18675 0.95870 1.12975 0.96085 1.20547 0.94750 0.98497 0.95580 1.21295 0.99971 1.04890 0.92835 1.17693 0.90127 0.88245 0.92409 1.19699 1.13109 1.16816 0.98822 0.90151 1.25972 0.95357 0.93930 0.99161 1.69837 1.21132 1.12778 1.37185 0.86245 0.79410 0.80688 0.80330 1.18300 1.19603 1.19888 1.20961 0.96749 1.10777 0.96469 1.20396 0.96087 0.97394 0.94302 1.20587 1.03705 0.93469 0.97964 1.17318 0.94962 0.91270 0.86480 1.42457 1.76803 1.17254 1.05458 0.92664 0.92178 0.92468 0.90624 0.91607 0.85270 0.84197 0.92050 0.91980 0.89302 0.86239 0.90700 0.88727 0.89281 0.84887 0.77367 0.77306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.15 0.37 -0.59 16 2 C -0.08 -0.56 5.50 -27.88 -0.15 -0.71 16 3 C -0.13 -1.32 5.16 -104.33 -0.54 -1.86 16 4 C -0.09 -0.94 9.65 -39.67 -0.38 -1.32 16 5 C -0.11 -1.52 9.61 -39.14 -0.38 -1.89 16 6 C -0.08 -1.16 5.87 -105.00 -0.62 -1.78 16 7 C 0.50 8.96 7.90 34.62 0.27 9.23 16 8 O -0.52 -10.08 16.13 -19.24 -0.31 -10.39 16 9 O -0.34 -6.65 9.45 -40.53 -0.38 -7.04 16 10 C 0.14 2.68 5.59 36.00 0.20 2.88 16 11 C -0.23 -5.25 5.54 -104.33 -0.58 -5.83 16 12 C -0.08 -1.77 9.67 -39.66 -0.38 -2.15 16 13 C -0.17 -4.40 8.70 -38.87 -0.34 -4.73 16 14 C 0.12 3.11 5.58 -106.82 -0.60 2.51 16 15 C -0.46 -11.84 9.05 -37.75 -0.34 -12.18 16 16 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 17 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 18 N -0.78 -19.86 10.95 55.55 0.61 -19.25 16 19 Si 0.91 18.18 29.60 -169.99 -5.03 13.15 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 24 C -0.06 -1.43 9.67 -39.66 -0.38 -1.82 16 25 C -0.13 -1.72 9.44 -38.95 -0.37 -2.09 16 26 C 0.20 2.11 6.73 -83.83 -0.56 1.55 16 27 N -0.88 -6.14 8.99 32.39 0.29 -5.85 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 32 H 0.07 0.38 6.78 -51.93 -0.35 0.03 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.14 2.00 7.60 -52.49 -0.40 1.60 16 35 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 36 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.12 3.16 6.16 -52.49 -0.32 2.83 16 39 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 40 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.13 1.66 7.65 -52.49 -0.40 1.25 16 43 H 0.40 2.25 8.84 -40.82 -0.36 1.89 16 44 H 0.40 2.07 6.91 -40.82 -0.28 1.79 16 LS Contribution 375.92 15.07 5.66 5.66 Total: -1.00 -29.34 375.92 -10.29 -39.63 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.88 Total: 9.12 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -5.25 Total: -25.03 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.90 Total: -25.11 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.69 Total: -17.43 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.34 -10.29 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785354106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.141 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds