Wall clock time and date at job start Tue Mar 31 2020 14:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50709 * 109.46900 * 2 1 4 4 C 1.38251 * 119.88487 * 264.99688 * 3 2 1 5 5 C 1.37971 * 120.23402 * 179.72048 * 4 3 2 6 6 C 1.39673 * 119.99434 * 0.28398 * 5 4 3 7 7 C 1.47744 * 120.11013 * 180.02562 * 6 5 4 8 8 O 1.21464 * 120.00321 * 179.97438 * 7 6 5 9 9 O 1.34713 * 119.99829 * 359.97438 * 7 6 5 10 10 C 1.45198 * 116.99646 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47093 * 180.02562 * 10 9 7 12 12 C 1.38634 * 119.74836 * 269.72909 * 11 10 9 13 13 C 1.37622 * 120.25123 * 179.72024 * 12 11 10 14 14 C 1.40719 * 119.74176 * 0.56876 * 13 12 11 15 15 C 1.41393 * 120.24436 * 179.67970 * 14 13 12 16 16 H 1.07995 * 119.99686 * 204.40170 * 15 14 13 17 17 C 1.39938 * 120.00006 * 24.40755 * 15 14 13 18 18 N 1.30829 * 120.00347 * 17.85500 * 17 15 14 19 19 Si 1.86804 * 119.99983 * 197.85367 * 17 15 14 20 20 H 1.48499 * 109.47006 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46965 * 119.99930 * 19 17 15 22 22 H 1.48501 * 109.47152 * 239.99763 * 19 17 15 23 23 C 1.40718 * 119.50775 * 359.70638 * 14 13 12 24 24 C 1.37612 * 119.74878 * 359.97438 * 23 14 13 25 25 C 1.39505 * 119.77474 * 359.97438 * 6 5 4 26 26 C 1.38666 * 119.76842 * 0.02562 * 25 6 5 27 27 N 1.39705 * 119.99994 * 179.97438 * 26 25 6 28 28 H 1.09001 * 109.47565 * 299.99821 * 1 2 3 29 29 H 1.09001 * 109.47438 * 60.00348 * 1 2 3 30 30 H 1.09002 * 109.46879 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47565 * 240.00178 * 2 1 3 32 32 H 1.09001 * 109.47438 * 119.99652 * 2 1 3 33 33 H 1.08001 * 119.88000 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.00259 * 180.29914 * 5 4 3 35 35 H 1.08997 * 109.47184 * 299.99936 * 10 9 7 36 36 H 1.09000 * 109.47219 * 60.00022 * 10 9 7 37 37 H 1.08000 * 119.87962 * 359.97438 * 12 11 10 38 38 H 1.07999 * 120.13434 * 180.27947 * 13 12 11 39 39 H 0.96996 * 120.00402 * 180.02562 * 18 17 15 40 40 H 1.08007 * 120.12201 * 179.97438 * 23 14 13 41 41 H 1.08001 * 119.87392 * 179.97438 * 24 23 14 42 42 H 1.08001 * 120.11393 * 179.97438 * 25 6 5 43 43 H 0.96997 * 120.00233 * 359.97438 * 27 26 25 44 44 H 0.97000 * 119.99947 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3604 2.0355 -1.1941 5 6 2.8155 3.3380 -1.2030 6 6 2.9516 4.0383 -0.0022 7 6 3.4381 5.4333 -0.0088 8 8 3.5554 6.0406 1.0366 9 8 3.7518 6.0317 -1.1742 10 6 4.2227 7.4035 -1.1050 11 6 4.5215 7.9028 -2.4951 12 6 5.7922 7.7417 -3.0256 13 6 6.0749 8.1886 -4.2961 14 6 5.0715 8.8218 -5.0528 15 6 5.3522 9.2911 -6.3567 16 1 4.7635 10.0909 -6.7810 17 6 6.3925 8.7190 -7.0974 18 7 6.8729 7.5508 -6.7564 19 14 7.0954 9.6232 -8.5732 20 1 6.3843 10.9153 -8.7467 21 1 8.5414 9.8802 -8.3535 22 1 6.9197 8.7933 -9.7920 23 6 3.7870 8.9849 -4.5019 24 6 3.5251 8.5243 -3.2319 25 6 2.6256 3.4164 1.2033 26 6 2.1691 2.1070 1.2010 27 7 1.8418 1.4793 2.4055 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2555 1.4958 -2.1237 34 1 3.0661 3.8161 -2.1384 35 1 3.4537 8.0292 -0.6521 36 1 5.1287 7.4465 -0.5005 37 1 6.5621 7.2600 -2.4411 38 1 7.0642 8.0580 -4.7092 39 1 7.5943 7.1545 -7.2696 40 1 3.0095 9.4699 -5.0737 41 1 2.5401 8.6488 -2.8069 42 1 2.7292 3.9526 2.1350 43 1 1.9342 1.9593 3.2433 44 1 1.5228 0.5633 2.4039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785354106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:28 Heat of formation + Delta-G solvation = -72.354539 kcal Electronic energy + Delta-G solvation = -25567.758529 eV Core-core repulsion = 21834.098097 eV Total energy + Delta-G solvation = -3733.660432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.63053 -40.39417 -39.44700 -37.49533 -35.80875 -35.63648 -34.63559 -32.61973 -31.24570 -30.93570 -29.72482 -28.80990 -26.23537 -25.17412 -23.39724 -22.99672 -22.92375 -21.87159 -21.40848 -19.27890 -19.09986 -18.37366 -17.67501 -17.44154 -17.13786 -16.63599 -16.52329 -15.83242 -15.55378 -15.49779 -15.18038 -14.74068 -14.60816 -14.52384 -14.39573 -14.00281 -13.95281 -13.84368 -13.53649 -13.48950 -12.88430 -12.83528 -12.71045 -12.61051 -12.43791 -12.11555 -11.98986 -11.81464 -11.72507 -11.62182 -11.58450 -11.42522 -11.29504 -11.04863 -9.87349 -9.44803 -9.34252 -8.68955 -8.48525 -6.39955 -0.31335 0.55147 0.71636 1.10501 1.38510 1.42689 1.53135 1.54766 1.88868 2.19827 2.70657 2.82494 2.99149 3.59087 3.75767 3.84034 3.91537 4.07457 4.09682 4.17946 4.34447 4.43178 4.47357 4.49685 4.53954 4.54198 4.58066 4.84198 4.92053 4.99883 5.05960 5.09443 5.11803 5.23950 5.29682 5.37582 5.39604 5.42410 5.46590 5.56964 5.64584 5.80053 5.87532 6.05203 6.13960 6.31113 6.51388 6.63796 6.70927 6.88106 6.96552 6.97655 8.27904 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002264 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.116606 B =12364.576687 C =13271.992736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.125 4.125 4 C -0.084 4.084 5 C -0.127 4.127 6 C -0.102 4.102 7 C 0.501 3.499 8 O -0.541 6.541 9 O -0.354 6.354 10 C 0.140 3.860 11 C -0.230 4.230 12 C -0.080 4.080 13 C -0.193 4.193 14 C 0.088 3.912 15 C -0.491 4.491 16 H 0.080 0.920 17 C 0.034 3.966 18 N -0.817 5.817 19 Si 0.985 3.015 20 H -0.257 1.257 21 H -0.264 1.264 22 H -0.264 1.264 23 C -0.244 4.244 24 C -0.065 4.065 25 C -0.145 4.145 26 C 0.210 3.790 27 N -0.862 5.862 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.151 0.849 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.291 0.709 40 H 0.104 0.896 41 H 0.117 0.883 42 H 0.132 0.868 43 H 0.407 0.593 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.985 -16.179 12.678 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.130 4.130 4 C -0.103 4.103 5 C -0.147 4.147 6 C -0.104 4.104 7 C 0.348 3.652 8 O -0.434 6.434 9 O -0.270 6.270 10 C 0.068 3.932 11 C -0.231 4.231 12 C -0.098 4.098 13 C -0.213 4.213 14 C 0.085 3.915 15 C -0.519 4.519 16 H 0.098 0.902 17 C -0.182 4.182 18 N -0.442 5.442 19 Si 0.806 3.194 20 H -0.180 1.180 21 H -0.188 1.188 22 H -0.189 1.189 23 C -0.264 4.264 24 C -0.083 4.083 25 C -0.168 4.168 26 C 0.104 3.896 27 N -0.404 5.404 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.169 0.831 34 H 0.143 0.857 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.135 0.865 42 H 0.150 0.850 43 H 0.236 0.764 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.775 -16.145 12.877 22.438 hybrid contribution 0.535 0.711 -0.331 0.949 sum -8.240 -15.434 12.545 21.529 Atomic orbital electron populations 1.21763 0.94106 1.02608 1.01997 1.20507 0.96449 0.90442 1.04166 1.19975 1.03530 0.98270 0.91196 1.21068 0.96994 0.93527 0.98669 1.21314 1.00857 0.95661 0.96880 1.18894 1.05781 0.89939 0.95770 1.21776 0.73759 0.88118 0.81509 1.90740 1.52029 1.66710 1.33880 1.86739 1.75585 1.30851 1.33870 1.21619 0.98846 0.77709 0.95038 1.18956 0.95271 1.11854 0.97066 1.20770 0.95895 0.98100 0.95076 1.21266 0.99514 1.06551 0.93933 1.18053 0.91101 0.89129 0.93196 1.19946 1.14863 1.17735 0.99391 0.90163 1.26844 0.94997 0.94343 1.02006 1.69882 1.21676 1.13982 1.38706 0.85112 0.78595 0.79248 0.76493 1.18034 1.18842 1.18901 1.21172 0.96444 1.11280 0.97474 1.20703 0.97407 0.96454 0.93720 1.20611 1.04518 0.94596 0.97085 1.17360 0.93869 0.90459 0.87894 1.42431 1.75532 1.17750 1.04725 0.92839 0.93135 0.90686 0.89581 0.89819 0.83129 0.85726 0.90815 0.91318 0.87701 0.87694 0.89849 0.87819 0.86524 0.85040 0.76362 0.75844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 71.98 0.71 -0.70 16 2 C -0.08 -0.82 5.50 29.85 0.16 -0.66 16 3 C -0.12 -2.17 5.16 -19.68 -0.10 -2.28 16 4 C -0.08 -1.74 9.65 22.21 0.21 -1.52 16 5 C -0.13 -3.46 9.61 22.55 0.22 -3.25 16 6 C -0.10 -3.07 5.87 -20.11 -0.12 -3.19 16 7 C 0.50 18.16 7.90 70.34 0.56 18.71 16 8 O -0.54 -21.14 16.13 19.95 0.32 -20.82 16 9 O -0.35 -13.89 9.45 -56.22 -0.53 -14.43 16 10 C 0.14 5.48 5.59 71.23 0.40 5.88 16 11 C -0.23 -10.34 5.54 -19.68 -0.11 -10.45 16 12 C -0.08 -3.84 9.67 22.22 0.21 -3.63 16 13 C -0.19 -10.34 8.70 22.73 0.20 -10.14 16 14 C 0.09 4.78 5.58 -21.29 -0.12 4.66 16 15 C -0.49 -26.32 9.05 23.46 0.21 -26.11 16 16 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 17 C 0.03 1.70 5.14 85.25 0.44 2.14 16 18 N -0.82 -42.46 10.95 21.83 0.24 -42.22 16 19 Si 0.99 37.57 29.60 68.60 2.03 39.60 16 20 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 21 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 22 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 23 C -0.24 -12.14 9.80 22.73 0.22 -11.92 16 24 C -0.06 -2.92 9.67 22.22 0.21 -2.71 16 25 C -0.14 -3.61 9.44 22.68 0.21 -3.39 16 26 C 0.21 3.92 6.73 38.17 0.26 4.18 16 27 N -0.86 -9.52 8.99 -51.45 -0.46 -9.99 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.79 8.05 -2.39 -0.02 0.77 16 32 H 0.08 0.62 6.78 -2.39 -0.02 0.60 16 33 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.12 3.70 7.60 -2.91 -0.02 3.68 16 35 H 0.07 2.69 8.07 -2.39 -0.02 2.67 16 36 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 37 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 38 H 0.11 5.82 6.16 -2.91 -0.02 5.80 16 39 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 40 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 42 H 0.13 3.22 7.65 -2.91 -0.02 3.20 16 43 H 0.41 3.50 8.84 -92.71 -0.82 2.68 16 44 H 0.41 2.74 6.91 -92.71 -0.64 2.10 16 Total: -1.00 -65.22 375.92 4.96 -60.26 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: -0.42 Total: 31.94 kcal Atomic # 6 Polarization: -48.14 SS G_CDS: 3.79 Total: -44.36 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.22 Total: -52.20 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.21 Total: -35.24 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -65.22 4.96 -60.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785354106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.095 kcal (2) G-P(sol) polarization free energy of solvation -65.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds