Wall clock time and date at job start Tue Mar 31 2020 14:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47148 * 2 1 4 4 C 1.38255 * 119.99902 * 265.00417 * 3 2 1 5 5 C 1.38221 * 119.99674 * 179.72392 * 4 3 2 6 6 C 1.38258 * 119.99926 * 0.27354 * 5 4 3 7 7 C 1.38216 * 119.99876 * 359.97438 * 6 5 4 8 8 C 1.38214 * 119.99665 * 85.19441 * 3 2 1 9 9 C 1.50704 * 120.00221 * 0.04066 * 8 3 2 10 10 C 1.50694 * 109.46957 * 85.16852 * 9 8 3 11 11 O 1.21296 * 120.00158 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00026 * 179.97438 * 10 9 8 13 13 C 1.39929 * 120.00095 * 174.79546 * 12 10 9 14 14 C 1.38968 * 120.03262 * 326.14982 * 13 12 10 15 15 C 1.38157 * 120.06366 * 179.76403 * 14 13 12 16 16 C 1.38165 * 120.13668 * 0.52378 * 15 14 13 17 17 C 1.38913 * 120.07406 * 359.73248 * 16 15 14 18 18 O 1.35748 * 120.03401 * 179.97438 * 17 16 15 19 19 C 1.34830 * 116.99871 * 185.92808 * 18 17 16 20 20 H 1.07998 * 120.00134 * 5.40443 * 19 18 17 21 21 C 1.38654 * 119.99892 * 185.40306 * 19 18 17 22 22 N 1.31565 * 120.00065 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99983 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46868 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46687 * 120.00132 * 23 21 19 26 26 H 1.48497 * 109.47140 * 240.00145 * 23 21 19 27 27 C 1.38703 * 120.03493 * 146.43108 * 13 12 10 28 28 H 1.09002 * 109.46406 * 299.99414 * 1 2 3 29 29 H 1.08998 * 109.46987 * 59.99489 * 1 2 3 30 30 H 1.09002 * 109.46999 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46868 * 240.00468 * 2 1 3 32 32 H 1.09003 * 109.47446 * 120.00622 * 2 1 3 33 33 H 1.08000 * 120.00098 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.99881 * 180.25706 * 5 4 3 35 35 H 1.07998 * 120.00011 * 179.97438 * 6 5 4 36 36 H 1.08002 * 119.99882 * 179.97438 * 7 6 5 37 37 H 1.08999 * 109.46993 * 205.16844 * 9 8 3 38 38 H 1.09000 * 109.47092 * 325.17308 * 9 8 3 39 39 H 0.96995 * 119.99539 * 354.79259 * 12 10 9 40 40 H 1.08001 * 119.96647 * 0.02562 * 14 13 12 41 41 H 1.07997 * 119.93181 * 180.23326 * 15 14 13 42 42 H 1.08004 * 119.96606 * 179.71787 * 16 15 14 43 43 H 0.97001 * 119.99562 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.07594 * 359.95678 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0378 -1.1928 5 6 2.8164 3.3429 -1.1932 6 6 2.9485 4.0293 -0.0004 7 6 2.6247 3.4107 1.1924 8 6 2.1682 2.1057 1.1928 9 6 1.8148 1.4314 2.4934 10 6 2.9976 0.6379 2.9854 11 8 4.0266 0.6218 2.3433 12 7 2.9125 -0.0532 4.1394 13 6 3.9702 -0.8765 4.5415 14 6 4.7289 -1.5483 3.5906 15 6 5.7764 -2.3575 3.9866 16 6 6.0661 -2.5099 5.3290 17 6 5.3080 -1.8452 6.2845 18 8 5.5930 -1.9960 7.6032 19 6 4.7456 -1.4235 8.4819 20 1 3.8407 -0.9506 8.1298 21 6 5.0359 -1.4419 9.8376 22 7 6.1379 -2.0185 10.2666 23 14 3.8623 -0.6481 11.0550 24 1 2.7047 -0.0733 10.3236 25 1 3.3807 -1.6714 12.0174 26 1 4.5683 0.4308 11.7916 27 6 4.2586 -1.0274 5.8897 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.2583 1.5014 -2.1245 34 1 3.0693 3.8262 -2.1253 35 1 3.3046 5.0489 -0.0007 36 1 2.7282 3.9469 2.1242 37 1 1.5503 2.1863 3.2339 38 1 0.9681 0.7628 2.3377 39 1 2.1182 0.0201 4.6911 40 1 4.5022 -1.4344 2.5408 41 1 6.3671 -2.8756 3.2457 42 1 6.8827 -3.1467 5.6357 43 1 6.3411 -2.0310 11.2150 44 1 3.6680 -0.5094 6.6308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785408657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:17 Heat of formation + Delta-G solvation = -20.325714 kcal Electronic energy + Delta-G solvation = -26324.576467 eV Core-core repulsion = 22593.172175 eV Total energy + Delta-G solvation = -3731.404293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56988 -39.45518 -38.48644 -36.42158 -34.48753 -34.20956 -32.75310 -32.23388 -29.80210 -29.46169 -28.75066 -27.38994 -25.30920 -24.06380 -22.79292 -21.84737 -21.71034 -20.66472 -19.91897 -17.99460 -17.76902 -16.82453 -16.55751 -16.25822 -15.64273 -15.19629 -15.01661 -14.80109 -14.33628 -14.13768 -14.00511 -13.83450 -13.62966 -13.57075 -13.24188 -13.14333 -12.94688 -12.54207 -12.27131 -12.10825 -11.96126 -11.74627 -11.54554 -11.48166 -11.15428 -11.00486 -10.93487 -10.85766 -10.80579 -10.45771 -9.89990 -9.63580 -9.42444 -8.91002 -8.82440 -8.70662 -7.73886 -7.16325 -6.46299 -4.06000 1.20072 1.29168 1.96312 2.36668 2.85106 3.10539 3.10933 3.16498 3.23016 3.71537 3.94339 4.42707 4.55948 4.59235 4.72460 4.78985 4.89198 4.97405 5.04586 5.09032 5.15477 5.20360 5.27083 5.32284 5.39524 5.46851 5.68680 5.71220 5.72318 5.85635 5.95177 5.98353 6.04681 6.07199 6.24436 6.27514 6.34946 6.38659 6.52093 6.62790 6.88203 6.97111 6.98590 7.11589 7.30398 7.41198 7.69276 7.80650 7.97957 8.32161 8.99170 9.69892 10.71894 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.002647 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.429306 B =10576.432542 C =11111.094857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.063 4.063 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.062 4.062 9 C -0.107 4.107 10 C 0.511 3.489 11 O -0.508 6.508 12 N -0.672 5.672 13 C 0.181 3.819 14 C -0.205 4.205 15 C -0.063 4.063 16 C -0.201 4.201 17 C 0.168 3.832 18 O -0.176 6.176 19 C -0.391 4.391 20 H 0.090 0.910 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.940 3.060 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.256 4.256 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.406 0.594 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.269 0.731 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 8.016 -18.791 24.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.137 4.137 5 C -0.136 4.136 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.062 4.062 9 C -0.146 4.146 10 C 0.297 3.703 11 O -0.382 6.382 12 N -0.317 5.317 13 C 0.088 3.912 14 C -0.226 4.226 15 C -0.082 4.082 16 C -0.221 4.221 17 C 0.114 3.886 18 O -0.080 6.080 19 C -0.468 4.468 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.202 1.202 27 C -0.278 4.278 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.241 0.759 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.079 0.921 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.632 7.867 -18.941 23.579 hybrid contribution -0.910 0.616 0.992 1.480 sum -12.542 8.483 -17.949 23.483 Atomic orbital electron populations 1.21774 0.94680 1.01873 1.02104 1.20583 0.95956 0.92863 1.03299 1.19665 0.98297 0.95706 0.92612 1.20967 1.00233 0.95181 0.97311 1.21100 0.99748 0.94799 0.98001 1.21062 1.00716 0.99991 0.92534 1.20992 0.98471 0.94442 0.98252 1.19081 1.00170 0.94009 0.92978 1.20760 0.97456 1.00252 0.96179 1.20543 0.89527 0.79438 0.80754 1.90757 1.30418 1.61347 1.55656 1.43537 1.19629 1.45145 1.23380 1.17401 0.89616 0.91492 0.92653 1.20518 1.00738 1.02911 0.98442 1.20525 0.96116 0.96987 0.94559 1.20250 1.04003 1.06255 0.91552 1.19084 0.91900 0.91855 0.85753 1.84021 1.48047 1.65914 1.10005 1.21312 1.02050 1.37059 0.86357 0.89222 1.25285 0.97313 0.97111 0.96822 1.70050 1.23491 1.40604 1.15545 0.85660 0.79213 0.78734 0.79855 1.19199 1.20137 1.20162 1.20817 1.04463 1.08495 0.94028 0.92521 0.92496 0.92212 0.90914 0.90927 0.86238 0.86274 0.86187 0.86173 0.87905 0.87593 0.75907 0.86456 0.86660 0.86395 0.92061 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.72 37.16 0.36 -0.74 16 2 C -0.09 -0.86 5.38 -27.88 -0.15 -1.01 16 3 C -0.06 -0.69 5.13 -104.62 -0.54 -1.23 16 4 C -0.12 -1.21 9.68 -39.58 -0.38 -1.59 16 5 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 6 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 7 C -0.10 -1.14 9.68 -39.58 -0.38 -1.53 16 8 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 9 C -0.11 -1.07 5.16 -29.04 -0.15 -1.22 16 10 C 0.51 7.34 6.78 -10.99 -0.07 7.26 16 11 O -0.51 -9.33 13.75 5.54 0.08 -9.25 16 12 N -0.67 -9.86 5.34 -9.88 -0.05 -9.92 16 13 C 0.18 3.45 6.27 -83.72 -0.52 2.93 16 14 C -0.21 -3.95 8.65 -39.34 -0.34 -4.29 16 15 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 16 C -0.20 -4.34 9.99 -39.36 -0.39 -4.73 16 17 C 0.17 4.08 6.64 -39.13 -0.26 3.82 16 18 O -0.18 -5.01 9.76 0.06 0.00 -5.01 16 19 C -0.39 -10.79 9.44 30.89 0.29 -10.50 16 20 H 0.09 2.27 5.30 -52.49 -0.28 1.99 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 22 N -0.86 -25.16 13.67 55.48 0.76 -24.40 16 23 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 27 C -0.26 -5.53 9.04 -39.21 -0.35 -5.89 16 28 H 0.06 0.40 6.83 -51.93 -0.35 0.04 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 32 H 0.07 0.79 6.42 -51.93 -0.33 0.46 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 38 H 0.11 0.84 5.63 -51.93 -0.29 0.55 16 39 H 0.41 4.57 8.82 -40.82 -0.36 4.21 16 40 H 0.12 2.21 6.45 -52.49 -0.34 1.87 16 41 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 42 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.13 2.73 5.71 -52.49 -0.30 2.43 16 LS Contribution 369.16 15.07 5.56 5.56 Total: -1.00 -33.83 369.16 -8.93 -42.76 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.61 Total: 8.83 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -4.64 Total: -23.74 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.71 Total: -34.32 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.08 Total: -14.27 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.83 -8.93 -42.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785408657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.432 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds