Wall clock time and date at job start Tue Mar 31 2020 14:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47148 * 2 1 4 4 C 1.38255 * 119.99902 * 265.00417 * 3 2 1 5 5 C 1.38221 * 119.99674 * 179.72392 * 4 3 2 6 6 C 1.38258 * 119.99926 * 0.27354 * 5 4 3 7 7 C 1.38216 * 119.99876 * 359.97438 * 6 5 4 8 8 C 1.38214 * 119.99665 * 85.19441 * 3 2 1 9 9 C 1.50704 * 120.00221 * 0.04066 * 8 3 2 10 10 C 1.50694 * 109.46957 * 85.16852 * 9 8 3 11 11 O 1.21296 * 120.00158 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00026 * 179.97438 * 10 9 8 13 13 C 1.39929 * 120.00095 * 174.79546 * 12 10 9 14 14 C 1.38968 * 120.03262 * 326.14982 * 13 12 10 15 15 C 1.38157 * 120.06366 * 179.76403 * 14 13 12 16 16 C 1.38165 * 120.13668 * 0.52378 * 15 14 13 17 17 C 1.38913 * 120.07406 * 359.73248 * 16 15 14 18 18 O 1.35748 * 120.03401 * 179.97438 * 17 16 15 19 19 C 1.34830 * 116.99871 * 185.92808 * 18 17 16 20 20 H 1.07998 * 120.00134 * 5.40443 * 19 18 17 21 21 C 1.38654 * 119.99892 * 185.40306 * 19 18 17 22 22 N 1.31565 * 120.00065 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99983 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46868 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46687 * 120.00132 * 23 21 19 26 26 H 1.48497 * 109.47140 * 240.00145 * 23 21 19 27 27 C 1.38703 * 120.03493 * 146.43108 * 13 12 10 28 28 H 1.09002 * 109.46406 * 299.99414 * 1 2 3 29 29 H 1.08998 * 109.46987 * 59.99489 * 1 2 3 30 30 H 1.09002 * 109.46999 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46868 * 240.00468 * 2 1 3 32 32 H 1.09003 * 109.47446 * 120.00622 * 2 1 3 33 33 H 1.08000 * 120.00098 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.99881 * 180.25706 * 5 4 3 35 35 H 1.07998 * 120.00011 * 179.97438 * 6 5 4 36 36 H 1.08002 * 119.99882 * 179.97438 * 7 6 5 37 37 H 1.08999 * 109.46993 * 205.16844 * 9 8 3 38 38 H 1.09000 * 109.47092 * 325.17308 * 9 8 3 39 39 H 0.96995 * 119.99539 * 354.79259 * 12 10 9 40 40 H 1.08001 * 119.96647 * 0.02562 * 14 13 12 41 41 H 1.07997 * 119.93181 * 180.23326 * 15 14 13 42 42 H 1.08004 * 119.96606 * 179.71787 * 16 15 14 43 43 H 0.97001 * 119.99562 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.07594 * 359.95678 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0378 -1.1928 5 6 2.8164 3.3429 -1.1932 6 6 2.9485 4.0293 -0.0004 7 6 2.6247 3.4107 1.1924 8 6 2.1682 2.1057 1.1928 9 6 1.8148 1.4314 2.4934 10 6 2.9976 0.6379 2.9854 11 8 4.0266 0.6218 2.3433 12 7 2.9125 -0.0532 4.1394 13 6 3.9702 -0.8765 4.5415 14 6 4.7289 -1.5483 3.5906 15 6 5.7764 -2.3575 3.9866 16 6 6.0661 -2.5099 5.3290 17 6 5.3080 -1.8452 6.2845 18 8 5.5930 -1.9960 7.6032 19 6 4.7456 -1.4235 8.4819 20 1 3.8407 -0.9506 8.1298 21 6 5.0359 -1.4419 9.8376 22 7 6.1379 -2.0185 10.2666 23 14 3.8623 -0.6481 11.0550 24 1 2.7047 -0.0733 10.3236 25 1 3.3807 -1.6714 12.0174 26 1 4.5683 0.4308 11.7916 27 6 4.2586 -1.0274 5.8897 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.2583 1.5014 -2.1245 34 1 3.0693 3.8262 -2.1253 35 1 3.3046 5.0489 -0.0007 36 1 2.7282 3.9469 2.1242 37 1 1.5503 2.1863 3.2339 38 1 0.9681 0.7628 2.3377 39 1 2.1182 0.0201 4.6911 40 1 4.5022 -1.4344 2.5408 41 1 6.3671 -2.8756 3.2457 42 1 6.8827 -3.1467 5.6357 43 1 6.3411 -2.0310 11.2150 44 1 3.6680 -0.5094 6.6308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785408657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:16 Heat of formation + Delta-G solvation = -39.752429 kcal Electronic energy + Delta-G solvation = -26325.418873 eV Core-core repulsion = 22593.172175 eV Total energy + Delta-G solvation = -3732.246698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73846 -40.70483 -39.89426 -38.08121 -35.63200 -35.20451 -34.23963 -33.55915 -31.11252 -30.51420 -30.20705 -28.42101 -27.26084 -24.77530 -23.95791 -23.51096 -22.73240 -21.68370 -21.09897 -19.79067 -19.30265 -18.15363 -17.47314 -17.17719 -16.98019 -16.75587 -16.21003 -16.02998 -15.81231 -15.62012 -15.44400 -15.14721 -14.65326 -14.56798 -14.35572 -14.24982 -13.95212 -13.87090 -13.58846 -13.27506 -13.04788 -12.84207 -12.78943 -12.64236 -12.60324 -12.46362 -12.15372 -12.08032 -11.69157 -11.55802 -11.45618 -11.28657 -10.91267 -10.72291 -9.68819 -9.47808 -9.35991 -8.87719 -8.46385 -6.15176 0.36974 0.44715 0.52792 0.68732 1.36540 1.44654 1.54922 1.62842 2.07675 2.18351 2.83724 2.89895 3.16896 3.48727 3.61172 3.86097 3.88312 4.02447 4.09803 4.14898 4.31120 4.32397 4.34142 4.43923 4.49470 4.52150 4.62636 4.65050 4.72312 4.75646 4.76977 5.01379 5.04079 5.09807 5.11354 5.17310 5.23810 5.38706 5.41408 5.47894 5.60115 5.64201 5.66151 5.66662 5.75393 6.01787 6.15117 6.17139 6.47984 6.98055 7.14669 7.77776 8.77000 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.002647 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.429306 B =10576.432542 C =11111.094857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.076 4.076 4 C -0.132 4.132 5 C -0.124 4.124 6 C -0.137 4.137 7 C -0.120 4.120 8 C -0.082 4.082 9 C -0.096 4.096 10 C 0.513 3.487 11 O -0.549 6.549 12 N -0.664 5.664 13 C 0.189 3.811 14 C -0.200 4.200 15 C -0.053 4.053 16 C -0.216 4.216 17 C 0.135 3.865 18 O -0.227 6.227 19 C -0.412 4.412 20 H 0.104 0.896 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.246 1.246 25 H -0.269 1.269 26 H -0.272 1.272 27 C -0.260 4.260 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.424 0.576 40 H 0.128 0.872 41 H 0.152 0.848 42 H 0.118 0.882 43 H 0.272 0.728 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.102 9.413 -20.550 27.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 C -0.076 4.076 4 C -0.149 4.149 5 C -0.142 4.142 6 C -0.155 4.155 7 C -0.138 4.138 8 C -0.082 4.082 9 C -0.135 4.135 10 C 0.303 3.697 11 O -0.425 6.425 12 N -0.310 5.310 13 C 0.095 3.905 14 C -0.220 4.220 15 C -0.071 4.071 16 C -0.236 4.236 17 C 0.083 3.917 18 O -0.133 6.133 19 C -0.488 4.488 20 H 0.122 0.878 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.169 1.169 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.282 4.282 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.262 0.738 40 H 0.146 0.854 41 H 0.169 0.831 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.151 9.278 -20.753 26.777 hybrid contribution -0.127 0.200 1.180 1.203 sum -14.278 9.478 -19.573 26.015 Atomic orbital electron populations 1.21751 0.93049 1.02577 1.02617 1.20582 0.97343 0.92003 1.02627 1.19928 0.98408 0.96330 0.92919 1.21267 1.00145 0.95653 0.97873 1.21432 0.99045 0.94802 0.98881 1.21371 1.00598 1.00968 0.92522 1.21261 0.98702 0.94772 0.99072 1.19280 1.00995 0.94390 0.93538 1.20792 0.95815 1.00629 0.96270 1.21319 0.90158 0.78638 0.79619 1.90738 1.32371 1.62729 1.56668 1.43545 1.19105 1.44361 1.23997 1.17441 0.90290 0.91229 0.91561 1.20823 1.00275 1.01941 0.98992 1.20903 0.95942 0.96252 0.94022 1.20469 1.04168 1.06542 0.92375 1.19604 0.93587 0.93456 0.85030 1.83988 1.49561 1.68039 1.11736 1.21856 1.02775 1.37147 0.86983 0.87828 1.26618 0.99281 0.97521 0.98690 1.70201 1.26242 1.43311 1.16151 0.84521 0.77154 0.77685 0.76799 1.16946 1.19440 1.19680 1.20851 1.03865 1.08182 0.95266 0.91944 0.92067 0.91395 0.90753 0.92403 0.84713 0.84164 0.84493 0.85357 0.85203 0.85177 0.73770 0.85377 0.83069 0.86390 0.91859 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.72 71.98 0.70 -1.07 16 2 C -0.09 -1.52 5.38 29.85 0.16 -1.35 16 3 C -0.08 -1.52 5.13 -19.87 -0.10 -1.62 16 4 C -0.13 -2.44 9.68 22.27 0.22 -2.22 16 5 C -0.12 -2.17 10.05 22.27 0.22 -1.94 16 6 C -0.14 -2.53 10.05 22.27 0.22 -2.30 16 7 C -0.12 -2.44 9.68 22.27 0.22 -2.22 16 8 C -0.08 -1.69 4.37 -19.86 -0.09 -1.77 16 9 C -0.10 -1.65 5.16 29.10 0.15 -1.50 16 10 C 0.51 13.58 6.78 87.65 0.59 14.18 16 11 O -0.55 -19.26 13.75 -3.08 -0.04 -19.31 16 12 N -0.66 -17.98 5.34 -303.55 -1.62 -19.60 16 13 C 0.19 6.95 6.27 38.13 0.24 7.19 16 14 C -0.20 -7.34 8.65 22.43 0.19 -7.14 16 15 C -0.05 -1.93 10.03 22.23 0.22 -1.71 16 16 C -0.22 -9.46 9.99 22.41 0.22 -9.23 16 17 C 0.13 6.72 6.64 22.56 0.15 6.87 16 18 O -0.23 -13.54 9.76 -22.71 -0.22 -13.76 16 19 C -0.41 -23.44 9.44 67.92 0.64 -22.79 16 20 H 0.10 5.32 5.30 -2.91 -0.02 5.31 16 21 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 22 N -0.92 -56.11 13.67 21.61 0.30 -55.82 16 23 Si 1.02 41.71 29.55 68.60 2.03 43.73 16 24 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 25 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 C -0.26 -11.23 9.04 22.51 0.20 -11.03 16 28 H 0.06 0.69 6.83 -2.39 -0.02 0.68 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 1.21 8.05 -2.38 -0.02 1.19 16 32 H 0.06 1.15 6.42 -2.39 -0.02 1.14 16 33 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 34 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.13 1.56 8.05 -2.39 -0.02 1.54 16 38 H 0.13 1.62 5.63 -2.39 -0.01 1.61 16 39 H 0.42 8.38 8.82 -92.71 -0.82 7.57 16 40 H 0.13 4.53 6.45 -2.91 -0.02 4.51 16 41 H 0.15 4.41 8.06 -2.91 -0.02 4.38 16 42 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 43 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 44 H 0.13 5.49 5.71 -2.91 -0.02 5.47 16 Total: -1.00 -76.96 369.16 5.29 -71.67 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.22 Total: 33.62 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 4.64 Total: -40.53 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -1.33 Total: -75.41 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.26 Total: -33.07 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -76.96 5.29 -71.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785408657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.914 kcal (2) G-P(sol) polarization free energy of solvation -76.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds