Wall clock time and date at job start Tue Mar 31 2020 14:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47138 * 2 1 4 4 C 1.53000 * 109.47138 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46923 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.46763 * 55.00233 * 6 5 4 8 8 C 1.52999 * 109.47161 * 174.99656 * 6 5 4 9 9 N 1.46492 * 109.47382 * 295.00105 * 6 5 4 10 10 S 1.65604 * 120.00074 * 145.00038 * 9 6 5 11 11 O 1.42102 * 106.40053 * 178.53574 * 10 9 6 12 12 O 1.42101 * 106.40305 * 311.45819 * 10 9 6 13 13 C 1.76195 * 107.21782 * 65.00088 * 10 9 6 14 14 C 1.38660 * 119.87335 * 269.72710 * 13 10 9 15 15 C 1.38617 * 120.49972 * 179.72047 * 14 13 10 16 16 C 1.37640 * 120.24950 * 0.55638 * 15 14 13 17 17 C 1.40707 * 119.74138 * 359.71957 * 16 15 14 18 18 C 1.41392 * 120.23852 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99896 * 204.37770 * 18 17 16 20 20 C 1.39945 * 120.00430 * 24.37776 * 18 17 16 21 21 N 1.30826 * 119.99817 * 17.87291 * 20 18 17 22 22 Si 1.86794 * 120.00099 * 197.86572 * 20 18 17 23 23 H 1.48502 * 109.46951 * 90.00289 * 22 20 18 24 24 H 1.48496 * 109.47525 * 210.00103 * 22 20 18 25 25 H 1.48502 * 109.47621 * 330.00396 * 22 20 18 26 26 C 1.37598 * 119.87967 * 89.99780 * 13 10 9 27 27 H 1.08999 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47033 * 299.99960 * 1 2 3 29 29 H 1.09003 * 109.46768 * 60.00358 * 1 2 3 30 30 H 1.09005 * 109.47264 * 239.99788 * 2 1 3 31 31 H 1.09004 * 109.47205 * 120.00274 * 2 1 3 32 32 H 1.08999 * 109.47507 * 60.00093 * 3 2 1 33 33 H 1.09004 * 109.47486 * 299.99699 * 3 2 1 34 34 H 1.08998 * 109.47452 * 60.00140 * 4 3 2 35 35 H 1.09003 * 109.47287 * 299.99727 * 4 3 2 36 36 H 1.08992 * 109.47278 * 60.00051 * 5 4 3 37 37 H 1.08993 * 109.46974 * 299.99450 * 5 4 3 38 38 H 1.08996 * 109.47334 * 180.02562 * 8 6 5 39 39 H 1.09006 * 109.47286 * 300.00737 * 8 6 5 40 40 H 1.09003 * 109.47054 * 60.00158 * 8 6 5 41 41 H 0.97008 * 120.00090 * 324.99822 * 9 6 5 42 42 H 1.07999 * 119.75039 * 359.97438 * 14 13 10 43 43 H 1.07999 * 119.87823 * 180.25078 * 15 14 13 44 44 H 1.08002 * 120.12939 * 179.74760 * 16 15 14 45 45 H 0.97004 * 119.99890 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.12612 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6100 2.8850 0.0026 7 1 5.9740 2.2956 -0.8391 8 6 6.1202 4.3220 -0.1226 9 7 6.0973 2.3011 1.2546 10 16 7.4809 1.3911 1.2606 11 8 7.7011 1.0044 2.6101 12 8 7.3526 0.4587 0.1959 13 6 8.8112 2.4618 0.8266 14 6 9.1687 2.6147 -0.5044 15 6 10.2094 3.4581 -0.8609 16 6 10.9075 4.1452 0.1062 17 6 10.5571 3.9933 1.4604 18 6 11.2668 4.6945 2.4624 19 1 11.2905 4.3149 3.4732 20 6 11.9384 5.8803 2.1445 21 7 11.6398 6.5271 1.0471 22 14 13.2610 6.5398 3.2869 23 1 14.5790 5.9800 2.8935 24 1 13.3040 8.0211 3.1915 25 1 12.9516 6.1426 4.6839 26 6 9.4951 3.1388 1.8101 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.9285 -0.8891 35 1 3.9330 0.9288 0.8909 36 1 3.7163 3.3985 0.8912 37 1 3.7171 3.3990 -0.8887 38 1 7.2101 4.3219 -0.1221 39 1 5.7575 4.7565 -1.0542 40 1 5.7562 4.9113 0.7190 41 1 5.6095 2.4474 2.0803 42 1 8.6296 2.0758 -1.2694 43 1 10.4768 3.5728 -1.9010 44 1 11.7206 4.7987 -0.1735 45 1 12.1051 7.3493 0.8269 46 1 9.2175 3.0152 2.8465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795068076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:35 Heat of formation + Delta-G solvation = -97.740460 kcal Electronic energy + Delta-G solvation = -25705.234917 eV Core-core repulsion = 22105.917621 eV Total energy + Delta-G solvation = -3599.317297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -37.77599 -37.55760 -36.57612 -35.37444 -35.27027 -33.85620 -31.64759 -30.09655 -29.85153 -29.50284 -26.41538 -25.48593 -22.55624 -21.87722 -21.11577 -21.02840 -20.78660 -19.16621 -18.02195 -17.00725 -16.13246 -15.91946 -15.61572 -15.13136 -14.86601 -14.50896 -14.23392 -14.02750 -13.70091 -13.49613 -13.34923 -13.10637 -12.80681 -12.58502 -12.31326 -12.04898 -11.87665 -11.72542 -11.55263 -11.53460 -11.39338 -11.37018 -11.32415 -11.20099 -10.99559 -10.93811 -10.90057 -10.85420 -10.61115 -10.56623 -10.38511 -9.77266 -9.64092 -9.35766 -9.11467 -8.02974 -7.70428 -6.93745 -4.54072 1.07463 2.20150 2.62687 2.99308 3.03422 3.06252 3.60469 3.82206 4.26531 4.43329 4.52906 4.76830 4.86241 4.98391 5.03309 5.09267 5.18945 5.35452 5.39728 5.49962 5.54537 5.58528 5.66234 5.71903 5.84183 5.88141 5.90538 5.92563 6.04979 6.09380 6.09722 6.17561 6.20256 6.33825 6.46391 6.60831 6.65721 6.76138 6.85399 7.02841 7.20682 7.30084 7.38721 7.72651 7.80781 7.94040 8.39988 8.66425 8.71446 10.01634 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.002855 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.272427 B = 9805.774088 C =10000.780169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.119 4.119 4 C -0.124 4.124 5 C -0.120 4.120 6 C 0.151 3.849 7 H 0.090 0.910 8 C -0.178 4.178 9 N -1.115 6.115 10 S 2.687 3.313 11 O -0.976 6.976 12 O -0.976 6.976 13 C -0.629 4.629 14 C -0.148 4.148 15 C -0.120 4.120 16 C -0.119 4.119 17 C 0.091 3.909 18 C -0.460 4.460 19 H 0.083 0.917 20 C 0.075 3.925 21 N -0.794 5.794 22 Si 0.912 3.088 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.123 4.123 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.412 0.588 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.283 0.717 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.410 -3.332 -3.138 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.157 4.157 4 C -0.162 4.162 5 C -0.159 4.159 6 C 0.044 3.956 7 H 0.108 0.892 8 C -0.237 4.237 9 N -0.872 5.872 10 S 2.783 3.217 11 O -0.966 6.966 12 O -0.966 6.966 13 C -0.721 4.721 14 C -0.169 4.169 15 C -0.140 4.140 16 C -0.139 4.139 17 C 0.088 3.912 18 C -0.489 4.489 19 H 0.101 0.899 20 C -0.143 4.143 21 N -0.419 5.419 22 Si 0.736 3.264 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.144 4.144 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.246 0.754 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.142 0.858 45 H 0.094 0.906 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.247 -4.056 -3.239 15.163 hybrid contribution 0.798 1.289 0.592 1.627 sum -13.449 -2.767 -2.647 13.984 Atomic orbital electron populations 1.21778 0.96153 1.01403 1.01624 1.21561 0.95552 0.97242 1.02206 1.21627 0.95697 0.96533 1.01816 1.21651 0.94798 0.96844 1.02911 1.21867 0.94151 0.97211 1.02697 1.20779 0.94428 0.94716 0.85721 0.89190 1.22402 1.03797 0.95706 1.01798 1.55636 1.43578 1.72040 1.15956 1.01677 0.73126 0.73877 0.73041 1.93533 1.85392 1.81715 1.35985 1.93510 1.86330 1.59467 1.57274 1.29736 1.20347 1.20414 1.01637 1.20051 1.01583 1.02501 0.92744 1.20801 0.97249 0.97996 0.97937 1.21632 0.99768 0.99571 0.92901 1.17682 0.89947 0.90544 0.93034 1.19626 1.26794 1.05498 0.97014 0.89935 1.25930 0.96461 0.96168 0.95750 1.69781 1.34848 1.13865 1.23411 0.86246 0.80978 0.78006 0.81195 1.19157 1.20232 1.18439 1.20763 0.97000 1.00251 0.96384 0.92963 0.92876 0.92891 0.91983 0.92009 0.92174 0.92148 0.91560 0.91672 0.91406 0.90795 0.90349 0.91968 0.92239 0.75448 0.87695 0.88463 0.85804 0.90610 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -1.08 5.93 -26.73 -0.16 -1.24 16 3 C -0.12 -1.03 5.21 -26.73 -0.14 -1.17 16 4 C -0.12 -1.28 5.10 -26.73 -0.14 -1.41 16 5 C -0.12 -1.20 4.81 -26.73 -0.13 -1.33 16 6 C 0.15 1.93 2.91 -67.93 -0.20 1.73 16 7 H 0.09 1.21 7.50 -51.93 -0.39 0.82 16 8 C -0.18 -2.41 9.52 37.16 0.35 -2.06 16 9 N -1.11 -15.86 4.92 -4.89 -0.02 -15.89 16 10 S 2.69 50.05 5.72 -107.50 -0.61 49.44 16 11 O -0.98 -20.57 17.27 -57.17 -0.99 -21.56 16 12 O -0.98 -19.64 16.60 -57.17 -0.95 -20.59 16 13 C -0.63 -13.46 5.05 -39.66 -0.20 -13.66 16 14 C -0.15 -3.11 8.61 -39.29 -0.34 -3.45 16 15 C -0.12 -2.64 10.02 -39.66 -0.40 -3.04 16 16 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 17 C 0.09 2.33 5.58 -106.82 -0.60 1.74 16 18 C -0.46 -11.71 9.05 -37.74 -0.34 -12.05 16 19 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 20 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 21 N -0.79 -19.38 10.95 55.55 0.61 -18.77 16 22 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 26 C -0.12 -2.91 9.26 -38.87 -0.36 -3.27 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.31 6.18 -51.93 -0.32 0.99 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.41 4.94 8.84 -34.48 -0.30 4.64 16 42 H 0.11 2.00 7.59 -52.49 -0.40 1.60 16 43 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 44 H 0.12 3.10 6.15 -52.49 -0.32 2.77 16 45 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 46 H 0.11 2.54 7.60 -52.49 -0.40 2.14 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -29.26 384.77 -11.48 -40.74 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -7.58 Total: 9.36 kcal Atomic # 6 Polarization: -38.79 SS G_CDS: -2.70 Total: -41.49 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.58 Total: -34.66 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -1.94 Total: -42.15 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 50.05 SS G_CDS: -0.61 Total: 49.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.26 -11.48 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795068076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.001 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds