Wall clock time and date at job start Tue Mar 31 2020 14:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47138 * 2 1 4 4 C 1.53000 * 109.47138 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46923 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.46763 * 55.00233 * 6 5 4 8 8 C 1.52999 * 109.47161 * 174.99656 * 6 5 4 9 9 N 1.46492 * 109.47382 * 295.00105 * 6 5 4 10 10 S 1.65604 * 120.00074 * 145.00038 * 9 6 5 11 11 O 1.42102 * 106.40053 * 178.53574 * 10 9 6 12 12 O 1.42101 * 106.40305 * 311.45819 * 10 9 6 13 13 C 1.76195 * 107.21782 * 65.00088 * 10 9 6 14 14 C 1.38660 * 119.87335 * 269.72710 * 13 10 9 15 15 C 1.38617 * 120.49972 * 179.72047 * 14 13 10 16 16 C 1.37640 * 120.24950 * 0.55638 * 15 14 13 17 17 C 1.40707 * 119.74138 * 359.71957 * 16 15 14 18 18 C 1.41392 * 120.23852 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99896 * 204.37770 * 18 17 16 20 20 C 1.39945 * 120.00430 * 24.37776 * 18 17 16 21 21 N 1.30826 * 119.99817 * 17.87291 * 20 18 17 22 22 Si 1.86794 * 120.00099 * 197.86572 * 20 18 17 23 23 H 1.48502 * 109.46951 * 90.00289 * 22 20 18 24 24 H 1.48496 * 109.47525 * 210.00103 * 22 20 18 25 25 H 1.48502 * 109.47621 * 330.00396 * 22 20 18 26 26 C 1.37598 * 119.87967 * 89.99780 * 13 10 9 27 27 H 1.08999 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47033 * 299.99960 * 1 2 3 29 29 H 1.09003 * 109.46768 * 60.00358 * 1 2 3 30 30 H 1.09005 * 109.47264 * 239.99788 * 2 1 3 31 31 H 1.09004 * 109.47205 * 120.00274 * 2 1 3 32 32 H 1.08999 * 109.47507 * 60.00093 * 3 2 1 33 33 H 1.09004 * 109.47486 * 299.99699 * 3 2 1 34 34 H 1.08998 * 109.47452 * 60.00140 * 4 3 2 35 35 H 1.09003 * 109.47287 * 299.99727 * 4 3 2 36 36 H 1.08992 * 109.47278 * 60.00051 * 5 4 3 37 37 H 1.08993 * 109.46974 * 299.99450 * 5 4 3 38 38 H 1.08996 * 109.47334 * 180.02562 * 8 6 5 39 39 H 1.09006 * 109.47286 * 300.00737 * 8 6 5 40 40 H 1.09003 * 109.47054 * 60.00158 * 8 6 5 41 41 H 0.97008 * 120.00090 * 324.99822 * 9 6 5 42 42 H 1.07999 * 119.75039 * 359.97438 * 14 13 10 43 43 H 1.07999 * 119.87823 * 180.25078 * 15 14 13 44 44 H 1.08002 * 120.12939 * 179.74760 * 16 15 14 45 45 H 0.97004 * 119.99890 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.12612 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6100 2.8850 0.0026 7 1 5.9740 2.2956 -0.8391 8 6 6.1202 4.3220 -0.1226 9 7 6.0973 2.3011 1.2546 10 16 7.4809 1.3911 1.2606 11 8 7.7011 1.0044 2.6101 12 8 7.3526 0.4587 0.1959 13 6 8.8112 2.4618 0.8266 14 6 9.1687 2.6147 -0.5044 15 6 10.2094 3.4581 -0.8609 16 6 10.9075 4.1452 0.1062 17 6 10.5571 3.9933 1.4604 18 6 11.2668 4.6945 2.4624 19 1 11.2905 4.3149 3.4732 20 6 11.9384 5.8803 2.1445 21 7 11.6398 6.5271 1.0471 22 14 13.2610 6.5398 3.2869 23 1 14.5790 5.9800 2.8935 24 1 13.3040 8.0211 3.1915 25 1 12.9516 6.1426 4.6839 26 6 9.4951 3.1388 1.8101 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.9285 -0.8891 35 1 3.9330 0.9288 0.8909 36 1 3.7163 3.3985 0.8912 37 1 3.7171 3.3990 -0.8887 38 1 7.2101 4.3219 -0.1221 39 1 5.7575 4.7565 -1.0542 40 1 5.7562 4.9113 0.7190 41 1 5.6095 2.4474 2.0803 42 1 8.6296 2.0758 -1.2694 43 1 10.4768 3.5728 -1.9010 44 1 11.7206 4.7987 -0.1735 45 1 12.1051 7.3493 0.8269 46 1 9.2175 3.0152 2.8465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795068076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:34 Heat of formation + Delta-G solvation = -114.235022 kcal Electronic energy + Delta-G solvation = -25705.950175 eV Core-core repulsion = 22105.917621 eV Total energy + Delta-G solvation = -3600.032554 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.46429 -38.69900 -38.11348 -36.89274 -36.18906 -35.65952 -32.52323 -31.90984 -31.59042 -30.60516 -27.35685 -27.16483 -23.64969 -23.38527 -22.80514 -21.87096 -21.70786 -20.66840 -19.68587 -18.50961 -17.72463 -17.27319 -16.81031 -16.55856 -16.46869 -15.97172 -15.26812 -15.13234 -15.02214 -14.90872 -14.47285 -14.29647 -14.03390 -13.88674 -13.62679 -13.36611 -13.19215 -13.17860 -13.07426 -13.03856 -12.81806 -12.77605 -12.61251 -12.47940 -12.41506 -12.22754 -12.01917 -11.69834 -11.64396 -11.53526 -11.38829 -11.28312 -11.23592 -11.13439 -10.38544 -9.81167 -9.54008 -8.73034 -6.44332 -0.45411 0.42715 0.85548 1.36853 1.46045 1.49402 2.16364 2.17250 2.56222 2.80875 3.48094 3.54710 3.69243 4.07042 4.08485 4.21254 4.28431 4.33865 4.35581 4.45162 4.52464 4.55291 4.75351 4.84686 4.85595 4.85721 4.91583 4.97750 5.01569 5.07532 5.11735 5.15076 5.15848 5.21381 5.30518 5.38272 5.42412 5.43409 5.49440 5.56842 5.58366 5.60656 5.90341 5.94989 6.11419 6.19560 6.53585 6.80448 6.85791 8.24681 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.002855 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.272427 B = 9805.774088 C =10000.780169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C -0.114 4.114 4 C -0.127 4.127 5 C -0.112 4.112 6 C 0.146 3.854 7 H 0.086 0.914 8 C -0.177 4.177 9 N -1.099 6.099 10 S 2.714 3.286 11 O -1.000 7.000 12 O -0.986 6.986 13 C -0.633 4.633 14 C -0.142 4.142 15 C -0.121 4.121 16 C -0.140 4.140 17 C 0.063 3.937 18 C -0.498 4.498 19 H 0.076 0.924 20 C 0.038 3.962 21 N -0.820 5.820 22 Si 0.981 3.019 23 H -0.262 1.262 24 H -0.265 1.265 25 H -0.261 1.261 26 C -0.143 4.143 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.425 0.575 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.112 0.888 45 H 0.291 0.709 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.981 -3.006 -3.775 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C -0.152 4.152 4 C -0.165 4.165 5 C -0.151 4.151 6 C 0.039 3.961 7 H 0.104 0.896 8 C -0.236 4.236 9 N -0.861 5.861 10 S 2.807 3.193 11 O -0.991 6.991 12 O -0.976 6.976 13 C -0.722 4.722 14 C -0.163 4.163 15 C -0.140 4.140 16 C -0.160 4.160 17 C 0.060 3.940 18 C -0.527 4.527 19 H 0.094 0.906 20 C -0.177 4.177 21 N -0.445 5.445 22 Si 0.802 3.198 23 H -0.187 1.187 24 H -0.189 1.189 25 H -0.185 1.185 26 C -0.164 4.164 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.261 0.739 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.130 0.870 45 H 0.102 0.898 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.806 -3.720 -3.885 16.696 hybrid contribution 1.149 1.126 0.696 1.753 sum -14.657 -2.594 -3.189 15.223 Atomic orbital electron populations 1.21763 0.95207 1.01787 1.02038 1.21587 0.96432 0.97195 1.01711 1.21586 0.94355 0.96684 1.02560 1.21669 0.96060 0.96755 1.02007 1.21839 0.91481 0.97444 1.04351 1.21004 0.96550 0.93984 0.84528 0.89612 1.22382 1.01471 0.96414 1.03313 1.55303 1.41649 1.71638 1.17500 1.00871 0.73025 0.73412 0.71999 1.93495 1.86028 1.82293 1.37259 1.93494 1.86539 1.59887 1.57641 1.30193 1.20984 1.19633 1.01397 1.20395 1.00925 1.01697 0.93239 1.21119 0.96809 0.97192 0.98913 1.21626 1.00491 1.00647 0.93237 1.18024 0.90796 0.91425 0.93785 1.19832 1.28997 1.06927 0.96983 0.90580 1.26703 0.97887 0.95807 0.97334 1.69811 1.35645 1.14375 1.24698 0.85205 0.77912 0.77789 0.78886 1.18695 1.18943 1.18453 1.20804 0.97491 1.01279 0.96872 0.92669 0.92560 0.92356 0.92371 0.92699 0.91570 0.91196 0.92350 0.92803 0.90126 0.88732 0.93832 0.89735 0.91719 0.73855 0.85235 0.85645 0.86994 0.89769 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.13 -2.01 5.93 30.59 0.18 -1.83 16 3 C -0.11 -1.69 5.21 30.59 0.16 -1.53 16 4 C -0.13 -2.33 5.10 30.60 0.16 -2.17 16 5 C -0.11 -1.91 4.81 30.60 0.15 -1.76 16 6 C 0.15 3.44 2.91 44.99 0.13 3.57 16 7 H 0.09 2.13 7.50 -2.38 -0.02 2.11 16 8 C -0.18 -4.48 9.52 71.98 0.69 -3.79 16 9 N -1.10 -29.79 4.92 -169.39 -0.83 -30.62 16 10 S 2.71 99.41 5.72 -56.49 -0.32 99.09 16 11 O -1.00 -42.09 17.27 -128.00 -2.21 -44.30 16 12 O -0.99 -38.39 16.60 -128.00 -2.12 -40.52 16 13 C -0.63 -27.16 5.05 22.22 0.11 -27.05 16 14 C -0.14 -5.88 8.61 22.46 0.19 -5.68 16 15 C -0.12 -5.29 10.02 22.22 0.22 -5.07 16 16 C -0.14 -7.05 8.70 22.73 0.20 -6.86 16 17 C 0.06 3.33 5.58 -21.29 -0.12 3.21 16 18 C -0.50 -26.40 9.05 23.46 0.21 -26.19 16 19 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 20 C 0.04 1.87 5.14 85.26 0.44 2.31 16 21 N -0.82 -40.82 10.95 21.83 0.24 -40.58 16 22 Si 0.98 37.23 29.59 68.60 2.03 39.26 16 23 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 24 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 26 C -0.14 -7.02 9.26 22.73 0.21 -6.81 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.10 7.75 -2.39 -0.02 1.08 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 1.42 6.18 -2.39 -0.01 1.40 16 39 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.42 9.52 8.84 -96.73 -0.85 8.67 16 42 H 0.13 4.69 7.59 -2.91 -0.02 4.67 16 43 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 44 H 0.11 5.80 6.15 -2.91 -0.02 5.78 16 45 H 0.29 13.04 8.30 -92.71 -0.77 12.27 16 46 H 0.11 5.13 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -63.86 384.77 0.52 -63.34 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: 0.10 Total: 35.18 kcal Atomic # 6 Polarization: -84.50 SS G_CDS: 3.64 Total: -80.86 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -0.59 Total: -71.20 kcal Atomic # 8 Polarization: -80.48 SS G_CDS: -4.33 Total: -84.82 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Atomic # 16 Polarization: 99.41 SS G_CDS: -0.32 Total: 99.09 kcal Total: -63.86 0.52 -63.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795068076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.895 kcal (2) G-P(sol) polarization free energy of solvation -63.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds