Wall clock time and date at job start Tue Mar 31 2020 14:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47400 * 2 1 4 4 C 1.52989 * 109.47218 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47218 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47666 * 180.02562 * 5 4 3 7 7 H 1.09009 * 109.46851 * 305.00202 * 6 5 4 8 8 C 1.52998 * 109.47647 * 185.00326 * 6 5 4 9 9 N 1.46496 * 109.47162 * 64.99688 * 6 5 4 10 10 S 1.65600 * 120.00572 * 215.00187 * 9 6 5 11 11 O 1.42097 * 106.40227 * 311.46495 * 10 9 6 12 12 O 1.42098 * 106.40314 * 178.53832 * 10 9 6 13 13 C 1.76200 * 107.21533 * 65.00321 * 10 9 6 14 14 C 1.38657 * 119.87534 * 269.97735 * 13 10 9 15 15 C 1.38611 * 120.50450 * 180.02562 * 14 13 10 16 16 C 1.37644 * 120.24502 * 0.02562 * 15 14 13 17 17 C 1.40691 * 119.74527 * 359.97438 * 16 15 14 18 18 C 1.41396 * 120.24245 * 180.02562 * 17 16 15 19 19 H 1.08009 * 119.99598 * 150.21707 * 18 17 16 20 20 C 1.39943 * 120.00268 * 330.22360 * 18 17 16 21 21 N 1.30825 * 119.99976 * 161.72740 * 20 18 17 22 22 Si 1.86793 * 119.99780 * 341.72399 * 20 18 17 23 23 H 1.48503 * 109.47344 * 95.41200 * 22 20 18 24 24 H 1.48503 * 109.46947 * 215.41231 * 22 20 18 25 25 H 1.48503 * 109.47306 * 335.41258 * 22 20 18 26 26 C 1.37596 * 119.87915 * 90.00065 * 13 10 9 27 27 H 1.09004 * 109.47313 * 299.99555 * 1 2 3 28 28 H 1.08999 * 109.47561 * 59.99941 * 1 2 3 29 29 H 1.09007 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46874 * 240.00386 * 2 1 3 31 31 H 1.08994 * 109.47314 * 120.00469 * 2 1 3 32 32 H 1.09004 * 109.46524 * 59.99962 * 3 2 1 33 33 H 1.08999 * 109.46812 * 300.00518 * 3 2 1 34 34 H 1.09004 * 109.47608 * 60.00375 * 4 3 2 35 35 H 1.08999 * 109.47448 * 299.99878 * 4 3 2 36 36 H 1.09007 * 109.47244 * 59.99846 * 5 4 3 37 37 H 1.09003 * 109.47513 * 300.00101 * 5 4 3 38 38 H 1.08994 * 109.47375 * 180.02562 * 8 6 5 39 39 H 1.09000 * 109.46687 * 300.00021 * 8 6 5 40 40 H 1.08996 * 109.47319 * 59.99696 * 8 6 5 41 41 H 0.97008 * 119.99776 * 35.00740 * 9 6 5 42 42 H 1.08003 * 119.74856 * 0.02562 * 14 13 10 43 43 H 1.08002 * 119.87783 * 179.97438 * 15 14 13 44 44 H 1.07997 * 120.12108 * 180.02562 * 16 15 14 45 45 H 0.97000 * 119.99656 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.12593 * 0.25677 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.6100 2.8850 -0.0026 7 1 5.9740 2.2956 0.8391 8 6 6.1201 4.3220 0.1226 9 7 6.0973 2.3010 -1.2546 10 16 7.4808 1.3911 -1.2607 11 8 8.4571 2.1406 -0.5505 12 8 7.6633 0.9472 -2.5982 13 6 7.1619 -0.0494 -0.2976 14 6 7.4191 -0.0402 1.0649 15 6 7.1735 -1.1663 1.8349 16 6 6.6710 -2.3080 1.2531 17 6 6.4061 -2.3289 -0.1285 18 6 5.8893 -3.4959 -0.7370 19 1 5.2556 -3.4153 -1.6079 20 6 6.1988 -4.7551 -0.2109 21 7 5.4659 -5.7928 -0.5234 22 14 7.6585 -4.9544 0.9375 23 1 7.1937 -4.8823 2.3461 24 1 8.3026 -6.2704 0.6956 25 1 8.6397 -3.8690 0.6839 26 6 6.6588 -1.1795 -0.9003 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.9330 0.9288 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 3.7170 3.3991 0.8887 37 1 3.7163 3.3986 -0.8913 38 1 7.2101 4.3220 0.1212 39 1 5.7561 4.9113 -0.7190 40 1 5.7576 4.7564 1.0542 41 1 5.6094 2.4475 -2.0803 42 1 7.8139 0.8512 1.5297 43 1 7.3780 -1.1481 2.8953 44 1 6.4800 -3.1841 1.8550 45 1 5.6802 -6.6655 -0.1584 46 1 6.4634 -1.1860 -1.9624 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795068079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:38 Heat of formation + Delta-G solvation = -95.120582 kcal Electronic energy + Delta-G solvation = -26485.579519 eV Core-core repulsion = 22886.375829 eV Total energy + Delta-G solvation = -3599.203690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -37.98553 -37.64158 -36.68633 -35.38627 -35.21375 -33.79939 -31.54351 -30.74815 -30.18584 -29.67874 -26.35868 -25.41179 -22.49857 -22.39093 -21.06547 -20.86117 -20.73214 -19.31965 -18.08162 -17.10361 -16.32304 -16.15687 -15.51536 -15.33206 -14.92734 -14.60159 -14.14042 -14.01941 -13.84479 -13.54697 -13.21332 -13.09865 -12.89686 -12.82022 -12.29754 -12.24014 -12.01224 -11.89419 -11.69663 -11.65676 -11.52607 -11.46655 -11.44447 -11.07538 -11.04272 -10.81159 -10.75169 -10.73344 -10.47674 -10.37234 -10.29939 -10.01755 -9.79116 -9.41636 -9.16536 -8.29132 -7.89571 -7.10530 -4.65770 0.92673 1.89863 2.39646 2.97646 3.10091 3.19164 3.45691 3.83761 4.10561 4.31742 4.59414 4.86663 4.96845 5.00140 5.11747 5.13471 5.22655 5.25681 5.40482 5.49252 5.61862 5.63962 5.69415 5.79471 5.84934 5.89808 5.93344 5.98419 6.01218 6.07640 6.18127 6.18434 6.28118 6.29828 6.38635 6.44018 6.48189 6.56282 6.57064 6.84679 7.04379 7.17694 7.19620 7.37345 7.60158 7.75626 8.16410 8.40769 8.59883 9.91310 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009445 B = 0.005499 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.820378 B = 5091.053631 C = 7071.738122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.115 4.115 4 C -0.126 4.126 5 C -0.121 4.121 6 C 0.151 3.849 7 H 0.089 0.911 8 C -0.171 4.171 9 N -1.114 6.114 10 S 2.687 3.313 11 O -0.971 6.971 12 O -0.972 6.972 13 C -0.623 4.623 14 C -0.159 4.159 15 C -0.091 4.091 16 C -0.198 4.198 17 C 0.075 3.925 18 C -0.442 4.442 19 H 0.095 0.905 20 C 0.085 3.915 21 N -0.800 5.800 22 Si 0.905 3.095 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.243 1.243 26 C -0.100 4.100 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.413 0.587 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.287 0.713 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 13.413 2.900 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.152 4.152 4 C -0.163 4.163 5 C -0.160 4.160 6 C 0.044 3.956 7 H 0.107 0.893 8 C -0.230 4.230 9 N -0.872 5.872 10 S 2.782 3.218 11 O -0.961 6.961 12 O -0.962 6.962 13 C -0.714 4.714 14 C -0.180 4.180 15 C -0.111 4.111 16 C -0.217 4.217 17 C 0.071 3.929 18 C -0.470 4.470 19 H 0.113 0.887 20 C -0.135 4.135 21 N -0.423 5.423 22 Si 0.731 3.269 23 H -0.195 1.195 24 H -0.213 1.213 25 H -0.166 1.166 26 C -0.121 4.121 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.247 0.753 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.098 0.902 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.635 13.339 2.591 14.357 hybrid contribution -0.124 -0.886 0.646 1.104 sum -4.760 12.453 3.237 13.719 Atomic orbital electron populations 1.21766 0.96364 1.01472 1.01181 1.21550 0.95298 0.96930 1.02868 1.21577 0.95607 0.96762 1.01297 1.21652 0.95001 0.96124 1.03549 1.21891 0.93829 0.97810 1.02453 1.20777 0.94748 0.94477 0.85631 0.89338 1.22328 1.02804 0.96056 1.01830 1.55663 1.47400 1.68122 1.15981 1.01784 0.72746 0.73797 0.73514 1.93520 1.56959 1.70754 1.74902 1.93551 1.84627 1.82249 1.35765 1.29946 1.16674 1.17112 1.07664 1.20052 1.07271 0.98971 0.91720 1.20691 0.98713 0.93628 0.98031 1.21292 1.07640 0.97741 0.95070 1.17770 0.90495 0.93404 0.91244 1.19509 1.25944 0.88825 1.12751 0.88712 1.26145 0.96963 0.95492 0.94946 1.69679 1.34140 1.01465 1.37019 0.86393 0.82327 0.78368 0.79814 1.19450 1.21325 1.16647 1.20820 1.00141 0.92896 0.98273 0.93156 0.93100 0.92847 0.91640 0.91765 0.92500 0.92476 0.91199 0.91356 0.90955 0.91547 0.91103 0.92378 0.91779 0.75298 0.87148 0.88002 0.87704 0.90197 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.21 16 2 C -0.13 -1.57 5.93 -26.73 -0.16 -1.73 16 3 C -0.11 -1.24 5.21 -26.74 -0.14 -1.38 16 4 C -0.13 -1.51 5.10 -26.74 -0.14 -1.64 16 5 C -0.12 -1.20 4.81 -26.73 -0.13 -1.33 16 6 C 0.15 1.75 2.77 -67.94 -0.19 1.56 16 7 H 0.09 1.11 7.23 -51.92 -0.38 0.73 16 8 C -0.17 -1.78 9.52 37.16 0.35 -1.42 16 9 N -1.11 -14.54 4.92 -4.89 -0.02 -14.57 16 10 S 2.69 47.16 5.65 -107.50 -0.61 46.55 16 11 O -0.97 -18.56 16.53 -57.17 -0.94 -19.50 16 12 O -0.97 -19.62 17.26 -57.17 -0.99 -20.60 16 13 C -0.62 -12.48 5.81 -39.66 -0.23 -12.71 16 14 C -0.16 -3.12 8.90 -39.29 -0.35 -3.47 16 15 C -0.09 -1.85 10.02 -39.66 -0.40 -2.25 16 16 C -0.20 -4.49 7.18 -38.87 -0.28 -4.77 16 17 C 0.07 1.81 5.10 -106.83 -0.55 1.26 16 18 C -0.44 -11.40 9.57 -37.74 -0.36 -11.76 16 19 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 20 C 0.08 2.13 5.40 -17.34 -0.09 2.03 16 21 N -0.80 -20.46 13.93 55.55 0.77 -19.68 16 22 Si 0.91 20.01 24.52 -169.99 -4.17 15.84 16 23 H -0.27 -5.68 6.71 56.52 0.38 -5.30 16 24 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.24 -5.58 6.86 56.52 0.39 -5.19 16 26 C -0.10 -2.24 9.26 -38.87 -0.36 -2.60 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.86 7.64 -51.93 -0.40 0.46 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.41 4.50 8.84 -34.47 -0.30 4.19 16 42 H 0.11 1.93 7.60 -52.48 -0.40 1.53 16 43 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.11 2.35 4.73 -52.49 -0.25 2.11 16 45 H 0.29 6.65 8.30 -40.82 -0.34 6.32 16 46 H 0.12 2.56 7.60 -52.49 -0.40 2.17 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -29.36 381.51 -10.47 -39.83 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.61 Total: 7.80 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: -2.65 Total: -41.41 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.75 Total: -34.25 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -1.93 Total: -40.10 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.17 Total: 15.84 kcal Atomic # 16 Polarization: 47.16 SS G_CDS: -0.61 Total: 46.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.36 -10.47 -39.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795068079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.293 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds