Wall clock time and date at job start Tue Mar 31 2020 14:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47400 * 2 1 4 4 C 1.52989 * 109.47218 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47218 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47666 * 180.02562 * 5 4 3 7 7 H 1.09009 * 109.46851 * 305.00202 * 6 5 4 8 8 C 1.52998 * 109.47647 * 185.00326 * 6 5 4 9 9 N 1.46496 * 109.47162 * 64.99688 * 6 5 4 10 10 S 1.65600 * 120.00572 * 215.00187 * 9 6 5 11 11 O 1.42097 * 106.40227 * 311.46495 * 10 9 6 12 12 O 1.42098 * 106.40314 * 178.53832 * 10 9 6 13 13 C 1.76200 * 107.21533 * 65.00321 * 10 9 6 14 14 C 1.38657 * 119.87534 * 269.97735 * 13 10 9 15 15 C 1.38611 * 120.50450 * 180.02562 * 14 13 10 16 16 C 1.37644 * 120.24502 * 0.02562 * 15 14 13 17 17 C 1.40691 * 119.74527 * 359.97438 * 16 15 14 18 18 C 1.41396 * 120.24245 * 180.02562 * 17 16 15 19 19 H 1.08009 * 119.99598 * 150.21707 * 18 17 16 20 20 C 1.39943 * 120.00268 * 330.22360 * 18 17 16 21 21 N 1.30825 * 119.99976 * 161.72740 * 20 18 17 22 22 Si 1.86793 * 119.99780 * 341.72399 * 20 18 17 23 23 H 1.48503 * 109.47344 * 95.41200 * 22 20 18 24 24 H 1.48503 * 109.46947 * 215.41231 * 22 20 18 25 25 H 1.48503 * 109.47306 * 335.41258 * 22 20 18 26 26 C 1.37596 * 119.87915 * 90.00065 * 13 10 9 27 27 H 1.09004 * 109.47313 * 299.99555 * 1 2 3 28 28 H 1.08999 * 109.47561 * 59.99941 * 1 2 3 29 29 H 1.09007 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46874 * 240.00386 * 2 1 3 31 31 H 1.08994 * 109.47314 * 120.00469 * 2 1 3 32 32 H 1.09004 * 109.46524 * 59.99962 * 3 2 1 33 33 H 1.08999 * 109.46812 * 300.00518 * 3 2 1 34 34 H 1.09004 * 109.47608 * 60.00375 * 4 3 2 35 35 H 1.08999 * 109.47448 * 299.99878 * 4 3 2 36 36 H 1.09007 * 109.47244 * 59.99846 * 5 4 3 37 37 H 1.09003 * 109.47513 * 300.00101 * 5 4 3 38 38 H 1.08994 * 109.47375 * 180.02562 * 8 6 5 39 39 H 1.09000 * 109.46687 * 300.00021 * 8 6 5 40 40 H 1.08996 * 109.47319 * 59.99696 * 8 6 5 41 41 H 0.97008 * 119.99776 * 35.00740 * 9 6 5 42 42 H 1.08003 * 119.74856 * 0.02562 * 14 13 10 43 43 H 1.08002 * 119.87783 * 179.97438 * 15 14 13 44 44 H 1.07997 * 120.12108 * 180.02562 * 16 15 14 45 45 H 0.97000 * 119.99656 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.12593 * 0.25677 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.6100 2.8850 -0.0026 7 1 5.9740 2.2956 0.8391 8 6 6.1201 4.3220 0.1226 9 7 6.0973 2.3010 -1.2546 10 16 7.4808 1.3911 -1.2607 11 8 8.4571 2.1406 -0.5505 12 8 7.6633 0.9472 -2.5982 13 6 7.1619 -0.0494 -0.2976 14 6 7.4191 -0.0402 1.0649 15 6 7.1735 -1.1663 1.8349 16 6 6.6710 -2.3080 1.2531 17 6 6.4061 -2.3289 -0.1285 18 6 5.8893 -3.4959 -0.7370 19 1 5.2556 -3.4153 -1.6079 20 6 6.1988 -4.7551 -0.2109 21 7 5.4659 -5.7928 -0.5234 22 14 7.6585 -4.9544 0.9375 23 1 7.1937 -4.8823 2.3461 24 1 8.3026 -6.2704 0.6956 25 1 8.6397 -3.8690 0.6839 26 6 6.6588 -1.1795 -0.9003 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.9330 0.9288 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 3.7170 3.3991 0.8887 37 1 3.7163 3.3986 -0.8913 38 1 7.2101 4.3220 0.1212 39 1 5.7561 4.9113 -0.7190 40 1 5.7576 4.7564 1.0542 41 1 5.6094 2.4475 -2.0803 42 1 7.8139 0.8512 1.5297 43 1 7.3780 -1.1481 2.8953 44 1 6.4800 -3.1841 1.8550 45 1 5.6802 -6.6655 -0.1584 46 1 6.4634 -1.1860 -1.9624 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795068079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:38 Heat of formation + Delta-G solvation = -113.340316 kcal Electronic energy + Delta-G solvation = -26486.369586 eV Core-core repulsion = 22886.375829 eV Total energy + Delta-G solvation = -3599.993757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.69821 -38.69335 -38.14544 -36.91110 -36.18768 -35.64158 -32.54673 -32.52703 -31.88882 -30.62190 -27.25357 -27.18439 -24.10375 -23.41336 -22.70240 -21.85879 -21.72415 -20.76489 -19.71087 -18.53410 -18.05997 -17.29974 -17.01191 -16.67295 -16.52009 -16.03165 -15.51522 -15.11489 -14.97305 -14.82764 -14.69412 -14.47018 -14.06394 -13.96677 -13.83835 -13.59470 -13.37040 -13.26868 -13.17399 -13.06724 -12.89136 -12.77139 -12.55605 -12.49831 -12.43449 -12.07222 -11.98623 -11.80689 -11.69173 -11.65480 -11.57618 -11.32561 -11.29290 -11.04473 -10.38077 -9.99202 -9.68246 -8.97681 -6.59664 -0.51408 0.18994 0.64949 1.19039 1.34246 1.41126 2.02359 2.10961 2.41881 2.76800 3.30376 3.45829 3.69384 4.05538 4.08583 4.16965 4.20360 4.30500 4.32860 4.34676 4.43907 4.51065 4.55259 4.74672 4.76048 4.83683 4.84681 4.86378 4.97386 5.01876 5.06714 5.12223 5.13544 5.15236 5.30722 5.33532 5.38678 5.42281 5.43513 5.48928 5.56774 5.61845 5.62976 5.76119 5.98954 6.18422 6.24166 6.58151 6.69351 8.10599 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009445 B = 0.005499 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.820378 B = 5091.053631 C = 7071.738122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.108 4.108 4 C -0.128 4.128 5 C -0.111 4.111 6 C 0.141 3.859 7 H 0.080 0.920 8 C -0.169 4.169 9 N -1.098 6.098 10 S 2.712 3.288 11 O -0.980 6.980 12 O -1.000 7.000 13 C -0.629 4.629 14 C -0.141 4.141 15 C -0.094 4.094 16 C -0.204 4.204 17 C 0.058 3.942 18 C -0.482 4.482 19 H 0.060 0.940 20 C 0.051 3.949 21 N -0.841 5.841 22 Si 0.954 3.046 23 H -0.248 1.248 24 H -0.274 1.274 25 H -0.257 1.257 26 C -0.119 4.119 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.426 0.574 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.107 0.893 45 H 0.296 0.704 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 16.651 5.015 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.145 4.145 4 C -0.166 4.166 5 C -0.150 4.150 6 C 0.035 3.965 7 H 0.098 0.902 8 C -0.228 4.228 9 N -0.861 5.861 10 S 2.804 3.196 11 O -0.969 6.969 12 O -0.990 6.990 13 C -0.718 4.718 14 C -0.161 4.161 15 C -0.113 4.113 16 C -0.224 4.224 17 C 0.054 3.946 18 C -0.511 4.511 19 H 0.078 0.922 20 C -0.165 4.165 21 N -0.467 5.467 22 Si 0.777 3.223 23 H -0.173 1.173 24 H -0.201 1.201 25 H -0.180 1.180 26 C -0.139 4.139 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.262 0.738 42 H 0.160 0.840 43 H 0.160 0.840 44 H 0.125 0.875 45 H 0.106 0.894 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.429 16.555 4.718 17.774 hybrid contribution -0.203 -1.623 0.009 1.636 sum -4.632 14.931 4.726 16.332 Atomic orbital electron populations 1.21737 0.94747 1.01523 1.02397 1.21577 0.96820 0.97916 1.00851 1.21533 0.94606 0.95641 1.02750 1.21648 0.96010 0.97441 1.01499 1.21858 0.92273 0.96349 1.04544 1.21069 0.96029 0.95212 0.84214 0.90176 1.22310 1.01616 0.95035 1.03799 1.55336 1.46493 1.66709 1.17548 1.01034 0.73358 0.72991 0.72229 1.93509 1.58110 1.70310 1.75014 1.93513 1.85589 1.82791 1.37130 1.30420 1.15112 1.17686 1.08545 1.20582 1.04391 0.99733 0.91415 1.21142 0.97442 0.92565 1.00167 1.21473 1.07565 0.98973 0.94383 1.17903 0.90969 0.93361 0.92348 1.19462 1.28018 0.90552 1.13065 0.92173 1.26758 0.98689 0.94859 0.96191 1.69705 1.35739 1.02140 1.39100 0.85659 0.79234 0.78220 0.79219 1.17313 1.20062 1.18044 1.20818 1.01386 0.93582 0.98150 0.91732 0.91998 0.93481 0.93998 0.93571 0.90747 0.91095 0.93441 0.93353 0.88524 0.89695 0.92920 0.90898 0.89455 0.73766 0.84028 0.84019 0.87538 0.89379 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.91 71.98 0.71 -2.24 16 2 C -0.13 -3.32 5.93 30.59 0.18 -3.14 16 3 C -0.11 -2.15 5.21 30.59 0.16 -1.99 16 4 C -0.13 -2.92 5.10 30.59 0.16 -2.76 16 5 C -0.11 -1.82 4.81 30.59 0.15 -1.67 16 6 C 0.14 2.84 2.77 44.99 0.12 2.97 16 7 H 0.08 1.76 7.23 -2.38 -0.02 1.75 16 8 C -0.17 -2.84 9.52 71.98 0.69 -2.15 16 9 N -1.10 -26.56 4.92 -169.39 -0.83 -27.40 16 10 S 2.71 91.84 5.65 -56.49 -0.32 91.52 16 11 O -0.98 -35.15 16.53 -128.00 -2.12 -37.26 16 12 O -1.00 -40.23 17.26 -128.00 -2.21 -42.44 16 13 C -0.63 -24.75 5.81 22.22 0.13 -24.62 16 14 C -0.14 -5.15 8.90 22.46 0.20 -4.95 16 15 C -0.09 -3.57 10.02 22.22 0.22 -3.35 16 16 C -0.20 -9.18 7.18 22.73 0.16 -9.01 16 17 C 0.06 2.88 5.10 -21.29 -0.11 2.77 16 18 C -0.48 -26.58 9.57 23.46 0.22 -26.36 16 19 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 20 C 0.05 2.66 5.40 85.26 0.46 3.12 16 21 N -0.84 -45.22 13.93 21.83 0.30 -44.92 16 22 Si 0.95 41.52 24.52 68.60 1.68 43.20 16 23 H -0.25 -9.90 6.71 99.48 0.67 -9.23 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.26 -11.58 6.86 99.48 0.68 -10.90 16 26 C -0.12 -5.47 9.26 22.73 0.21 -5.26 16 27 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 29 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.27 7.75 -2.38 -0.02 1.25 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.10 7.64 -2.39 -0.02 1.08 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.43 8.45 8.84 -96.74 -0.85 7.59 16 42 H 0.14 4.34 7.60 -2.91 -0.02 4.32 16 43 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 44 H 0.11 4.70 4.73 -2.91 -0.01 4.69 16 45 H 0.30 14.23 8.30 -92.71 -0.77 13.46 16 46 H 0.11 5.11 7.60 -2.91 -0.02 5.08 16 Total: -1.00 -66.22 381.51 0.22 -66.00 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.04 Total: 29.94 kcal Atomic # 6 Polarization: -82.32 SS G_CDS: 3.67 Total: -78.65 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -0.53 Total: -72.31 kcal Atomic # 8 Polarization: -75.38 SS G_CDS: -4.33 Total: -79.70 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.68 Total: 43.20 kcal Atomic # 16 Polarization: 91.84 SS G_CDS: -0.32 Total: 91.52 kcal Total: -66.22 0.22 -66.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795068079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.336 kcal (2) G-P(sol) polarization free energy of solvation -66.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds