Wall clock time and date at job start Tue Mar 31 2020 13:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38670 * 120.41944 * 2 1 4 4 C 1.38626 * 118.42464 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.15862 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.62174 * 179.97438 * 5 4 3 7 7 O 1.45209 * 109.46670 * 359.97438 * 6 5 4 8 8 C 1.34235 * 116.99762 * 179.97438 * 7 6 5 9 9 O 1.20830 * 119.99941 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99927 * 180.02562 * 8 7 6 11 11 C 1.52994 * 109.47232 * 180.02562 * 10 8 7 12 12 H 1.09009 * 109.47243 * 305.36706 * 11 10 8 13 13 C 1.50704 * 109.47334 * 65.36634 * 11 10 8 14 14 H 1.08006 * 119.99512 * 34.62116 * 13 11 10 15 15 C 1.37877 * 120.00270 * 214.62054 * 13 11 10 16 16 N 1.31513 * 119.99636 * 186.44625 * 15 13 11 17 17 Si 1.86800 * 119.99694 * 6.45022 * 15 13 11 18 18 H 1.48501 * 109.47095 * 85.00529 * 17 15 13 19 19 H 1.48505 * 109.46728 * 205.00366 * 17 15 13 20 20 H 1.48495 * 109.47447 * 325.00362 * 17 15 13 21 21 C 1.50697 * 109.47534 * 185.36838 * 11 10 8 22 22 C 1.38233 * 120.00050 * 296.36400 * 21 11 10 23 23 C 1.38237 * 120.00179 * 179.80639 * 22 21 11 24 24 C 1.38227 * 119.99768 * 0.39588 * 23 22 21 25 25 C 1.38228 * 120.00270 * 359.85453 * 24 23 22 26 26 C 1.38233 * 120.00296 * 116.62759 * 21 11 10 27 27 N 1.31852 * 120.76377 * 0.24871 * 5 4 3 28 28 C 1.31889 * 121.72615 * 359.48460 * 27 5 4 29 29 H 1.09002 * 109.47728 * 89.99660 * 1 2 3 30 30 H 1.09009 * 109.47334 * 209.99771 * 1 2 3 31 31 H 1.09006 * 109.47235 * 329.99577 * 1 2 3 32 32 H 1.07994 * 120.79035 * 0.02562 * 3 2 1 33 33 H 1.07993 * 120.42444 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.47587 * 119.99407 * 6 5 4 35 35 H 1.08996 * 109.47440 * 239.99760 * 6 5 4 36 36 H 1.08995 * 109.47159 * 300.00657 * 10 8 7 37 37 H 1.09007 * 109.46976 * 60.00522 * 10 8 7 38 38 H 0.97004 * 119.99439 * 179.97438 * 16 15 13 39 39 H 1.08006 * 119.99792 * 359.97438 * 22 21 11 40 40 H 1.08005 * 119.99637 * 180.22589 * 23 22 21 41 41 H 1.08010 * 119.99811 * 179.83333 * 24 23 22 42 42 H 1.08004 * 120.00202 * 179.97438 * 25 24 23 43 43 H 1.08004 * 119.99990 * 359.97438 * 26 21 11 44 44 H 1.07997 * 119.62167 * 180.27080 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2090 1.1958 0.0000 4 6 3.5945 1.1476 -0.0005 5 6 4.2255 -0.0823 -0.0016 6 6 5.7311 -0.1469 -0.0028 7 8 6.2733 1.2002 -0.0032 8 6 7.6104 1.3189 -0.0037 9 8 8.3047 0.3299 -0.0043 10 6 8.2455 2.6855 -0.0036 11 6 9.7686 2.5400 -0.0049 12 1 10.0744 1.9129 0.8327 13 6 10.2113 1.9034 -1.2971 14 1 9.6829 2.1189 -2.2141 15 6 11.2909 1.0459 -1.3087 16 7 11.7563 0.5900 -2.4512 17 14 12.0925 0.5315 0.2983 18 1 11.3594 -0.6273 0.8684 19 1 13.5050 0.1485 0.0465 20 1 12.0503 1.6644 1.2574 21 6 10.4033 3.9003 0.1282 22 6 10.2209 4.8479 -0.8616 23 6 10.7998 6.0971 -0.7376 24 6 11.5678 6.3959 0.3722 25 6 11.7544 5.4466 1.3594 26 6 11.1723 4.1987 1.2374 27 7 3.5254 -1.1996 -0.0070 28 6 2.2066 -1.1916 -0.0015 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6889 2.1423 0.0004 33 1 4.1734 2.0592 -0.0001 34 1 6.0729 -0.6762 0.8867 35 1 6.0715 -0.6754 -0.8932 36 1 7.9323 3.2318 -0.8931 37 1 7.9331 3.2312 0.8868 38 1 12.5160 -0.0130 -2.4594 39 1 9.6238 4.6132 -1.7304 40 1 10.6542 6.8387 -1.5092 41 1 12.0223 7.3710 0.4677 42 1 12.3549 5.6799 2.2264 43 1 11.3180 3.4571 2.0089 44 1 1.6671 -2.1272 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795981386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:30 Heat of formation + Delta-G solvation = -32.800110 kcal Electronic energy + Delta-G solvation = -26196.003573 eV Core-core repulsion = 22464.058350 eV Total energy + Delta-G solvation = -3731.945223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.55548 -39.75599 -38.58930 -36.22441 -34.19648 -34.00568 -32.18335 -31.75851 -30.24471 -29.64812 -28.81276 -26.38228 -25.21288 -23.68133 -22.81972 -21.95767 -21.59002 -20.63835 -19.23740 -17.27176 -17.07226 -16.98950 -16.28287 -16.09433 -15.92297 -15.29798 -15.12171 -14.62519 -14.50731 -14.24187 -13.86967 -13.58380 -13.41483 -13.14563 -12.86067 -12.77611 -12.72626 -12.61583 -12.41016 -12.07608 -11.92395 -11.82736 -11.64931 -11.16138 -10.83182 -10.60182 -10.43895 -10.40903 -9.99220 -9.91922 -9.72141 -9.61121 -9.57618 -9.21826 -8.87111 -8.47681 -8.23640 -7.87778 -6.05737 -4.04467 0.90939 1.13569 2.06719 2.10281 2.91391 3.00271 3.38538 3.43049 3.47945 3.58457 4.26235 4.47697 4.52876 4.57418 4.59366 4.76110 4.81259 5.17571 5.24933 5.25113 5.38671 5.43659 5.48156 5.49491 5.52671 5.60005 5.64491 5.65334 5.77819 5.84654 5.88519 5.95934 6.03447 6.09802 6.20347 6.26748 6.46220 6.54177 6.63923 6.76600 6.91097 6.98061 7.11677 7.23004 7.49971 7.65169 7.76247 7.81069 8.43370 8.51393 8.92972 9.58380 11.06764 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.002961 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.958143 B = 9452.940658 C =10703.029003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.146 4.146 3 C -0.078 4.078 4 C -0.144 4.144 5 C 0.124 3.876 6 C 0.119 3.881 7 O -0.371 6.371 8 C 0.461 3.539 9 O -0.468 6.468 10 C -0.088 4.088 11 C 0.053 3.947 12 H 0.051 0.949 13 C -0.499 4.499 14 H 0.073 0.927 15 C 0.087 3.913 16 N -0.894 5.894 17 Si 0.871 3.129 18 H -0.272 1.272 19 H -0.294 1.294 20 H -0.260 1.260 21 C -0.040 4.040 22 C -0.100 4.100 23 C -0.127 4.127 24 C -0.147 4.147 25 C -0.126 4.126 26 C -0.134 4.134 27 N -0.478 5.478 28 C 0.102 3.898 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.135 0.865 33 H 0.148 0.852 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.264 0.736 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.829 5.096 6.844 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.148 4.148 3 C -0.104 4.104 4 C -0.164 4.164 5 C -0.013 4.013 6 C 0.044 3.956 7 O -0.290 6.290 8 C 0.302 3.698 9 O -0.350 6.350 10 C -0.126 4.126 11 C 0.034 3.966 12 H 0.069 0.931 13 C -0.535 4.535 14 H 0.092 0.908 15 C -0.116 4.116 16 N -0.531 5.531 17 Si 0.699 3.301 18 H -0.197 1.197 19 H -0.221 1.221 20 H -0.184 1.184 21 C -0.040 4.040 22 C -0.119 4.119 23 C -0.145 4.145 24 C -0.166 4.166 25 C -0.144 4.144 26 C -0.153 4.153 27 N -0.187 5.187 28 C -0.056 4.056 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.153 0.847 33 H 0.166 0.834 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.006 3.825 6.737 18.687 hybrid contribution 0.247 0.230 0.618 0.704 sum -16.759 4.055 7.355 18.746 Atomic orbital electron populations 1.20703 0.90225 1.03040 1.02565 1.20947 0.97586 0.94367 1.01917 1.21532 0.94010 0.98183 0.96645 1.22025 0.94800 0.99874 0.99674 1.20803 0.95171 0.89118 0.96232 1.21218 0.87419 0.82706 1.04267 1.86401 1.25689 1.31123 1.85742 1.23919 0.78942 0.93760 0.73174 1.90726 1.62360 1.39662 1.42251 1.21493 0.97838 0.89776 1.03508 1.18194 0.88247 0.90129 1.00076 0.93079 1.20618 1.14747 1.25900 0.92268 0.90847 1.24898 0.95946 0.94934 0.95821 1.69893 1.25002 1.32865 1.25359 0.86957 0.77981 0.80027 0.85160 1.19708 1.22060 1.18429 1.20609 0.95726 0.95721 0.91962 1.20971 0.99983 0.92436 0.98464 1.21054 0.98700 0.97089 0.97661 1.20876 1.01235 0.98958 0.95499 1.20965 1.00464 0.94139 0.98860 1.21144 0.99435 0.96283 0.98403 1.67203 1.08459 1.30775 1.12286 1.22567 0.89150 0.97570 0.96330 0.90925 0.91226 0.91364 0.84719 0.83398 0.89272 0.88906 0.88446 0.89971 0.92670 0.86160 0.87111 0.87377 0.87321 0.86956 0.82671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.04 36.00 0.36 -0.27 16 2 C -0.15 -1.35 5.90 -104.49 -0.62 -1.97 16 3 C -0.08 -0.76 9.86 -39.28 -0.39 -1.14 16 4 C -0.14 -1.73 9.42 -39.44 -0.37 -2.10 16 5 C 0.12 1.74 6.78 -82.59 -0.56 1.18 16 6 C 0.12 1.85 6.01 36.01 0.22 2.06 16 7 O -0.37 -6.09 8.66 -39.27 -0.34 -6.43 16 8 C 0.46 8.99 7.71 36.00 0.28 9.26 16 9 O -0.47 -11.02 14.75 -18.75 -0.28 -11.30 16 10 C -0.09 -1.60 5.05 -27.89 -0.14 -1.74 16 11 C 0.05 1.16 1.28 -92.93 -0.12 1.04 16 12 H 0.05 1.19 4.79 -51.92 -0.25 0.94 16 13 C -0.50 -13.33 6.94 -34.44 -0.24 -13.57 16 14 H 0.07 2.12 8.06 -52.48 -0.42 1.70 16 15 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 16 N -0.89 -27.48 13.96 55.43 0.77 -26.70 16 17 Si 0.87 22.20 27.04 -169.99 -4.60 17.60 16 18 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 20 H -0.26 -6.09 5.15 56.52 0.29 -5.80 16 21 C -0.04 -0.81 4.77 -104.63 -0.50 -1.30 16 22 C -0.10 -1.90 8.87 -39.58 -0.35 -2.25 16 23 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 16 24 C -0.15 -2.34 10.05 -39.59 -0.40 -2.73 16 25 C -0.13 -2.11 10.05 -39.59 -0.40 -2.50 16 26 C -0.13 -2.57 9.13 -39.58 -0.36 -2.93 16 27 N -0.48 -6.61 10.27 -9.47 -0.10 -6.71 16 28 C 0.10 1.09 10.86 -17.55 -0.19 0.90 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.33 8.10 -51.92 -0.42 -0.09 16 31 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.15 1.68 6.98 -52.49 -0.37 1.32 16 34 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 35 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 36 H 0.10 1.65 7.80 -51.93 -0.41 1.24 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 39 H 0.12 2.23 7.77 -52.48 -0.41 1.82 16 40 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 42 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 43 H 0.11 2.10 6.96 -52.48 -0.37 1.74 16 44 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -33.06 371.96 -9.31 -42.37 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.11 Total: 3.72 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -4.27 Total: -18.16 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.68 Total: -33.41 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.62 Total: -17.72 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.60 Total: 17.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.06 -9.31 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795981386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.572 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds