Wall clock time and date at job start Tue Mar 31 2020 13:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38670 * 120.41944 * 2 1 4 4 C 1.38626 * 118.42464 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.15862 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.62174 * 179.97438 * 5 4 3 7 7 O 1.45209 * 109.46670 * 359.97438 * 6 5 4 8 8 C 1.34235 * 116.99762 * 179.97438 * 7 6 5 9 9 O 1.20830 * 119.99941 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99927 * 180.02562 * 8 7 6 11 11 C 1.52994 * 109.47232 * 180.02562 * 10 8 7 12 12 H 1.09009 * 109.47243 * 305.36706 * 11 10 8 13 13 C 1.50704 * 109.47334 * 65.36634 * 11 10 8 14 14 H 1.08006 * 119.99512 * 34.62116 * 13 11 10 15 15 C 1.37877 * 120.00270 * 214.62054 * 13 11 10 16 16 N 1.31513 * 119.99636 * 186.44625 * 15 13 11 17 17 Si 1.86800 * 119.99694 * 6.45022 * 15 13 11 18 18 H 1.48501 * 109.47095 * 85.00529 * 17 15 13 19 19 H 1.48505 * 109.46728 * 205.00366 * 17 15 13 20 20 H 1.48495 * 109.47447 * 325.00362 * 17 15 13 21 21 C 1.50697 * 109.47534 * 185.36838 * 11 10 8 22 22 C 1.38233 * 120.00050 * 296.36400 * 21 11 10 23 23 C 1.38237 * 120.00179 * 179.80639 * 22 21 11 24 24 C 1.38227 * 119.99768 * 0.39588 * 23 22 21 25 25 C 1.38228 * 120.00270 * 359.85453 * 24 23 22 26 26 C 1.38233 * 120.00296 * 116.62759 * 21 11 10 27 27 N 1.31852 * 120.76377 * 0.24871 * 5 4 3 28 28 C 1.31889 * 121.72615 * 359.48460 * 27 5 4 29 29 H 1.09002 * 109.47728 * 89.99660 * 1 2 3 30 30 H 1.09009 * 109.47334 * 209.99771 * 1 2 3 31 31 H 1.09006 * 109.47235 * 329.99577 * 1 2 3 32 32 H 1.07994 * 120.79035 * 0.02562 * 3 2 1 33 33 H 1.07993 * 120.42444 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.47587 * 119.99407 * 6 5 4 35 35 H 1.08996 * 109.47440 * 239.99760 * 6 5 4 36 36 H 1.08995 * 109.47159 * 300.00657 * 10 8 7 37 37 H 1.09007 * 109.46976 * 60.00522 * 10 8 7 38 38 H 0.97004 * 119.99439 * 179.97438 * 16 15 13 39 39 H 1.08006 * 119.99792 * 359.97438 * 22 21 11 40 40 H 1.08005 * 119.99637 * 180.22589 * 23 22 21 41 41 H 1.08010 * 119.99811 * 179.83333 * 24 23 22 42 42 H 1.08004 * 120.00202 * 179.97438 * 25 24 23 43 43 H 1.08004 * 119.99990 * 359.97438 * 26 21 11 44 44 H 1.07997 * 119.62167 * 180.27080 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2090 1.1958 0.0000 4 6 3.5945 1.1476 -0.0005 5 6 4.2255 -0.0823 -0.0016 6 6 5.7311 -0.1469 -0.0028 7 8 6.2733 1.2002 -0.0032 8 6 7.6104 1.3189 -0.0037 9 8 8.3047 0.3299 -0.0043 10 6 8.2455 2.6855 -0.0036 11 6 9.7686 2.5400 -0.0049 12 1 10.0744 1.9129 0.8327 13 6 10.2113 1.9034 -1.2971 14 1 9.6829 2.1189 -2.2141 15 6 11.2909 1.0459 -1.3087 16 7 11.7563 0.5900 -2.4512 17 14 12.0925 0.5315 0.2983 18 1 11.3594 -0.6273 0.8684 19 1 13.5050 0.1485 0.0465 20 1 12.0503 1.6644 1.2574 21 6 10.4033 3.9003 0.1282 22 6 10.2209 4.8479 -0.8616 23 6 10.7998 6.0971 -0.7376 24 6 11.5678 6.3959 0.3722 25 6 11.7544 5.4466 1.3594 26 6 11.1723 4.1987 1.2374 27 7 3.5254 -1.1996 -0.0070 28 6 2.2066 -1.1916 -0.0015 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6889 2.1423 0.0004 33 1 4.1734 2.0592 -0.0001 34 1 6.0729 -0.6762 0.8867 35 1 6.0715 -0.6754 -0.8932 36 1 7.9323 3.2318 -0.8931 37 1 7.9331 3.2312 0.8868 38 1 12.5160 -0.0130 -2.4594 39 1 9.6238 4.6132 -1.7304 40 1 10.6542 6.8387 -1.5092 41 1 12.0223 7.3710 0.4677 42 1 12.3549 5.6799 2.2264 43 1 11.3180 3.4571 2.0089 44 1 1.6671 -2.1272 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795981386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:29 Heat of formation + Delta-G solvation = -50.804767 kcal Electronic energy + Delta-G solvation = -26196.784314 eV Core-core repulsion = 22464.058350 eV Total energy + Delta-G solvation = -3732.725964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69459 -41.06444 -39.99690 -37.72177 -35.91422 -34.84705 -33.80101 -33.09023 -31.59826 -30.89701 -29.92866 -28.07787 -26.30106 -24.57018 -24.43570 -23.32430 -22.58506 -22.00405 -20.85716 -19.09050 -18.68600 -18.14312 -17.58797 -17.39833 -17.14414 -16.66485 -16.24063 -15.94549 -15.74983 -15.54939 -15.40555 -14.83138 -14.63434 -14.41224 -14.16741 -14.05542 -13.95966 -13.74298 -13.42830 -13.36974 -13.28445 -13.16656 -12.90998 -12.74153 -12.43475 -12.13299 -11.92996 -11.86671 -11.84612 -11.53743 -11.31941 -11.08346 -10.77584 -10.62538 -10.48104 -9.74186 -9.60323 -9.32030 -8.26061 -6.24271 0.03311 0.30037 0.69479 0.73052 1.30617 1.38480 1.39409 1.40534 1.56295 2.38568 2.69854 3.06432 3.18645 3.26108 3.73090 3.89244 3.94687 4.03418 4.08251 4.09487 4.15969 4.22498 4.25881 4.33224 4.40182 4.48540 4.53560 4.61469 4.76995 4.78468 4.85644 4.86383 4.89877 4.96191 5.10610 5.15468 5.20888 5.34643 5.35636 5.39928 5.50991 5.62936 5.74809 5.78540 5.82835 6.01351 6.30220 6.36220 6.76022 6.90341 6.95337 7.40613 8.90460 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.002961 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.958143 B = 9452.940658 C =10703.029003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.135 4.135 3 C -0.077 4.077 4 C -0.152 4.152 5 C 0.095 3.905 6 C 0.122 3.878 7 O -0.354 6.354 8 C 0.464 3.536 9 O -0.517 6.517 10 C -0.084 4.084 11 C 0.054 3.946 12 H 0.038 0.962 13 C -0.477 4.477 14 H 0.038 0.962 15 C 0.026 3.974 16 N -0.949 5.949 17 Si 0.918 3.082 18 H -0.285 1.285 19 H -0.297 1.297 20 H -0.227 1.227 21 C -0.063 4.063 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.139 4.139 25 C -0.125 4.125 26 C -0.151 4.151 27 N -0.508 5.508 28 C 0.089 3.911 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.168 0.832 33 H 0.150 0.850 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.260 0.740 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.111 0.889 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.833 8.217 8.766 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C -0.102 4.102 4 C -0.171 4.171 5 C -0.041 4.041 6 C 0.047 3.953 7 O -0.271 6.271 8 C 0.307 3.693 9 O -0.403 6.403 10 C -0.122 4.122 11 C 0.035 3.965 12 H 0.056 0.944 13 C -0.515 4.515 14 H 0.057 0.943 15 C -0.171 4.171 16 N -0.590 5.590 17 Si 0.745 3.255 18 H -0.211 1.211 19 H -0.224 1.224 20 H -0.150 1.150 21 C -0.064 4.064 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.156 4.156 25 C -0.142 4.142 26 C -0.169 4.169 27 N -0.219 5.219 28 C -0.069 4.069 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.185 0.815 33 H 0.168 0.832 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.128 0.872 37 H 0.140 0.860 38 H 0.069 0.931 39 H 0.130 0.870 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.158 0.842 43 H 0.129 0.871 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -19.044 6.994 8.687 22.069 hybrid contribution 0.653 -0.634 0.001 0.910 sum -18.391 6.360 8.688 21.311 Atomic orbital electron populations 1.20799 0.87280 1.04529 1.03691 1.21378 0.99574 0.93472 0.99217 1.21928 0.93019 0.99918 0.95368 1.22115 0.96193 0.98927 0.99894 1.20543 0.93890 0.90360 0.99295 1.21182 0.89316 0.81741 1.03093 1.86381 1.24020 1.31741 1.84939 1.24262 0.79551 0.93745 0.71741 1.90714 1.63598 1.41251 1.44761 1.21465 0.95298 0.89407 1.05997 1.18078 0.90778 0.91007 0.96655 0.94370 1.20854 1.12907 1.24585 0.93153 0.94331 1.25623 0.97337 0.95832 0.98276 1.70033 1.26450 1.35116 1.27418 0.86189 0.76534 0.80145 0.82670 1.21135 1.22392 1.14976 1.20350 0.97247 0.95045 0.93747 1.21033 1.00962 0.93592 0.98010 1.21396 0.97752 0.96467 0.98714 1.21347 0.99742 1.00273 0.94274 1.21334 0.99777 0.93048 1.00075 1.21262 0.99774 0.97708 0.98121 1.67113 1.10211 1.31161 1.13378 1.23105 0.88238 0.99558 0.95969 0.89757 0.89869 0.89845 0.81479 0.83200 0.89913 0.90943 0.87169 0.85991 0.93140 0.87039 0.84305 0.83621 0.84216 0.87077 0.80210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.04 71.23 0.71 -0.12 16 2 C -0.13 -2.14 5.90 -19.78 -0.12 -2.26 16 3 C -0.08 -1.31 9.86 22.47 0.22 -1.09 16 4 C -0.15 -3.54 9.42 22.36 0.21 -3.33 16 5 C 0.10 2.75 6.78 42.55 0.29 3.04 16 6 C 0.12 4.04 6.01 71.24 0.43 4.47 16 7 O -0.35 -11.95 8.66 -51.47 -0.45 -12.39 16 8 C 0.46 18.64 7.71 71.24 0.55 19.18 16 9 O -0.52 -25.66 14.75 21.95 0.32 -25.33 16 10 C -0.08 -3.05 5.05 29.85 0.15 -2.89 16 11 C 0.05 2.39 1.28 -12.29 -0.02 2.38 16 12 H 0.04 1.79 4.79 -2.38 -0.01 1.78 16 13 C -0.48 -26.60 6.94 25.60 0.18 -26.42 16 14 H 0.04 2.36 8.06 -2.91 -0.02 2.33 16 15 C 0.03 1.58 5.47 84.65 0.46 2.04 16 16 N -0.95 -61.51 13.96 21.45 0.30 -61.21 16 17 Si 0.92 47.22 27.04 68.60 1.85 49.07 16 18 H -0.28 -15.13 7.11 99.48 0.71 -14.42 16 19 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 20 H -0.23 -10.30 5.15 99.48 0.51 -9.79 16 21 C -0.06 -2.52 4.77 -19.87 -0.09 -2.61 16 22 C -0.12 -4.31 8.87 22.27 0.20 -4.11 16 23 C -0.13 -3.75 10.05 22.27 0.22 -3.52 16 24 C -0.14 -3.75 10.05 22.26 0.22 -3.53 16 25 C -0.12 -3.66 10.05 22.27 0.22 -3.43 16 26 C -0.15 -5.40 9.13 22.27 0.20 -5.20 16 27 N -0.51 -14.31 10.27 -183.88 -1.89 -16.20 16 28 C 0.09 1.80 10.86 84.67 0.92 2.72 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.47 8.10 -2.38 -0.02 0.45 16 31 H 0.08 0.46 8.10 -2.38 -0.02 0.44 16 32 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 33 H 0.15 3.31 6.98 -2.91 -0.02 3.29 16 34 H 0.08 2.78 8.13 -2.38 -0.02 2.76 16 35 H 0.07 2.64 8.13 -2.39 -0.02 2.62 16 36 H 0.11 3.71 7.80 -2.39 -0.02 3.69 16 37 H 0.12 3.46 8.14 -2.38 -0.02 3.44 16 38 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 39 H 0.11 4.16 7.77 -2.91 -0.02 4.13 16 40 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 41 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.11 3.93 6.96 -2.91 -0.02 3.91 16 44 H 0.18 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -77.20 371.96 5.92 -71.28 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.81 Total: 19.48 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 4.97 Total: -24.69 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -1.59 Total: -77.41 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -0.12 Total: -37.73 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.85 Total: 49.07 kcal Total: -77.20 5.92 -71.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795981386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.479 kcal (2) G-P(sol) polarization free energy of solvation -77.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds