Wall clock time and date at job start Tue Mar 31 2020 13:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38228 * 119.61926 * 2 1 4 4 C 1.38625 * 119.15991 * 179.97438 * 3 2 1 5 5 C 1.38666 * 118.42525 * 359.97438 * 4 3 2 6 6 C 1.38186 * 119.16203 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.61878 * 179.97438 * 6 5 4 8 8 O 1.45194 * 109.47256 * 359.97438 * 7 6 5 9 9 C 1.34230 * 116.99915 * 179.97438 * 8 7 6 10 10 O 1.20822 * 120.00167 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99722 * 179.97438 * 9 8 7 12 12 C 1.52998 * 109.47055 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47070 * 54.05643 * 12 11 9 14 14 C 1.50697 * 109.47219 * 294.05851 * 12 11 9 15 15 H 1.07994 * 120.00311 * 330.30427 * 14 12 11 16 16 C 1.37888 * 119.99810 * 150.30362 * 14 12 11 17 17 N 1.31507 * 120.00272 * 6.29033 * 16 14 12 18 18 Si 1.86806 * 119.99715 * 186.56569 * 16 14 12 19 19 H 1.48494 * 109.46979 * 179.72116 * 18 16 14 20 20 H 1.48497 * 109.46980 * 299.72563 * 18 16 14 21 21 H 1.48505 * 109.47065 * 59.72551 * 18 16 14 22 22 C 1.50698 * 109.47439 * 174.05675 * 12 11 9 23 23 C 1.38241 * 119.99754 * 64.22115 * 22 12 11 24 24 C 1.38231 * 119.99710 * 179.79203 * 23 22 12 25 25 C 1.38236 * 120.00470 * 0.43866 * 24 23 22 26 26 C 1.38234 * 119.99567 * 359.81151 * 25 24 23 27 27 C 1.38236 * 120.00247 * 244.49314 * 22 12 11 28 28 N 1.31854 * 119.62137 * 180.24600 * 2 1 3 29 29 H 1.08999 * 109.46917 * 89.99567 * 1 2 3 30 30 H 1.08992 * 109.47193 * 210.00456 * 1 2 3 31 31 H 1.09002 * 109.46858 * 330.00250 * 1 2 3 32 32 H 1.08001 * 120.41910 * 359.95780 * 3 2 1 33 33 H 1.08010 * 120.79238 * 179.97438 * 4 3 2 34 34 H 1.08006 * 120.42557 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47095 * 239.99829 * 7 6 5 36 36 H 1.09003 * 109.47305 * 120.00127 * 7 6 5 37 37 H 1.09003 * 109.46778 * 60.00672 * 11 9 8 38 38 H 1.08998 * 109.47569 * 300.00541 * 11 9 8 39 39 H 0.97003 * 119.99865 * 355.06712 * 17 16 14 40 40 H 1.07999 * 119.99604 * 359.97438 * 23 22 12 41 41 H 1.08000 * 119.99845 * 180.27329 * 24 23 22 42 42 H 1.07997 * 120.00283 * 179.83572 * 25 24 23 43 43 H 1.08003 * 119.99916 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.99786 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.2266 -0.0342 0.0016 6 6 3.4766 -1.1948 0.0016 7 6 4.1727 -2.5314 0.0021 8 8 5.6104 -2.3284 0.0021 9 6 6.3809 -3.4275 0.0031 10 8 5.8710 -4.5228 0.0035 11 6 7.8822 -3.2951 0.0025 12 6 8.5169 -4.6872 0.0032 13 1 8.1184 -5.2686 -0.8283 14 6 8.1987 -5.3837 1.3011 15 1 8.0515 -4.8064 2.2019 16 6 8.0954 -6.7582 1.3387 17 7 8.3950 -7.4695 0.2739 18 14 7.5224 -7.6094 2.8997 19 1 7.4909 -9.0777 2.6798 20 1 8.4596 -7.2947 4.0077 21 1 6.1609 -7.1325 3.2524 22 6 10.0110 -4.5583 -0.1445 23 6 10.7517 -3.9338 0.8417 24 6 12.1228 -3.8193 0.7082 25 6 12.7522 -4.3211 -0.4156 26 6 12.0109 -4.9410 -1.4041 27 6 10.6403 -5.0593 -1.2687 28 7 2.1587 -1.1462 -0.0049 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6508 2.1373 -0.0007 33 1 4.1367 2.1139 0.0001 34 1 5.3057 -0.0805 0.0025 35 1 3.8851 -3.0912 -0.8879 36 1 3.8844 -3.0908 0.8921 37 1 8.1992 -2.7504 0.8918 38 1 8.1988 -2.7523 -0.8881 39 1 8.6195 -7.0253 -0.5587 40 1 10.2594 -3.5381 1.7177 41 1 12.7020 -3.3354 1.4807 42 1 13.8231 -4.2293 -0.5210 43 1 12.5026 -5.3327 -2.2823 44 1 10.0612 -5.5436 -2.0410 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795982841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:17 Heat of formation + Delta-G solvation = -37.024208 kcal Electronic energy + Delta-G solvation = -26211.111577 eV Core-core repulsion = 22478.983183 eV Total energy + Delta-G solvation = -3732.128394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57171 -39.75323 -38.51818 -36.21875 -34.34657 -33.33787 -32.82623 -31.46115 -30.15786 -29.43021 -28.47304 -26.75091 -25.18990 -23.15577 -22.61557 -22.01429 -21.69195 -20.57558 -19.60127 -17.26545 -16.93172 -16.73194 -16.27585 -16.16670 -15.84449 -15.71478 -14.89956 -14.70470 -14.35467 -14.18224 -13.70403 -13.57402 -13.35225 -13.23232 -12.91738 -12.58137 -12.47938 -12.46458 -12.23045 -12.21537 -11.80368 -11.75212 -11.55763 -11.10754 -10.75301 -10.49075 -10.47070 -10.22525 -10.08869 -9.93890 -9.76701 -9.68285 -9.59323 -8.92200 -8.73346 -8.36515 -8.18174 -7.70764 -6.31632 -4.01373 0.91749 1.11394 2.14681 2.18485 2.89452 2.99692 3.46652 3.52040 3.55980 3.67383 4.15407 4.49642 4.55275 4.59370 4.61370 4.87369 5.03949 5.21834 5.30933 5.33015 5.39238 5.43885 5.45908 5.50765 5.56309 5.58581 5.68206 5.71332 5.83555 5.89921 5.94830 6.01512 6.05291 6.10568 6.26177 6.34051 6.52139 6.54315 6.72581 6.84166 6.98888 7.09437 7.18204 7.31928 7.63042 7.79976 7.81807 8.10747 8.41434 8.51369 8.88548 9.68764 11.08519 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003009 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.022149 B = 9303.313371 C =10762.354861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.129 3.871 3 C -0.179 4.179 4 C -0.073 4.073 5 C -0.156 4.156 6 C 0.135 3.865 7 C 0.118 3.882 8 O -0.372 6.372 9 C 0.460 3.540 10 O -0.465 6.465 11 C -0.088 4.088 12 C 0.068 3.932 13 H 0.053 0.947 14 C -0.578 4.578 15 H 0.048 0.952 16 C 0.034 3.966 17 N -0.901 5.901 18 Si 1.062 2.938 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.288 1.288 22 C -0.033 4.033 23 C -0.107 4.107 24 C -0.129 4.129 25 C -0.151 4.151 26 C -0.124 4.124 27 C -0.128 4.128 28 N -0.482 5.482 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.147 0.853 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.270 0.730 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.538 17.351 -2.030 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.009 4.009 3 C -0.198 4.198 4 C -0.098 4.098 5 C -0.176 4.176 6 C -0.002 4.002 7 C 0.044 3.956 8 O -0.291 6.291 9 C 0.301 3.699 10 O -0.347 6.347 11 C -0.126 4.126 12 C 0.050 3.950 13 H 0.071 0.929 14 C -0.616 4.616 15 H 0.066 0.934 16 C -0.172 4.172 17 N -0.536 5.536 18 Si 0.891 3.109 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.214 1.214 22 C -0.033 4.033 23 C -0.125 4.125 24 C -0.147 4.147 25 C -0.169 4.169 26 C -0.142 4.142 27 C -0.147 4.147 28 N -0.193 5.193 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.165 0.835 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.453 14.700 -1.362 16.538 hybrid contribution 0.741 2.155 -0.570 2.349 sum -6.711 16.855 -1.931 18.244 Atomic orbital electron populations 1.20708 0.88691 1.03500 1.03105 1.21210 0.96910 0.87936 0.94884 1.21946 0.95074 0.99148 1.03673 1.21629 0.94381 0.98396 0.95436 1.22009 1.02566 0.92245 1.00761 1.20772 0.89323 0.94752 0.95327 1.21208 0.77769 0.92430 1.04225 1.86412 1.17963 1.38896 1.85795 1.23963 0.90891 0.81811 0.73248 1.90731 1.74721 1.27185 1.42103 1.21510 0.85652 1.02364 1.03044 1.17944 0.86452 0.90187 1.00466 0.92869 1.21573 1.52470 0.94153 0.93368 0.93366 1.25618 0.93511 0.94618 1.03437 1.70770 1.41825 1.39055 1.01980 0.83643 0.76397 0.76348 0.74514 1.20824 1.21610 1.21426 1.20699 0.98570 0.92471 0.91583 1.20928 0.93110 0.99786 0.98670 1.21017 0.94982 1.01122 0.97581 1.20843 0.98724 1.01875 0.95451 1.20969 0.94336 1.00144 0.98773 1.21061 0.94305 1.01144 0.98142 1.67028 1.08904 1.30031 1.13360 0.90402 0.90358 0.90706 0.84860 0.84624 0.83481 0.89223 0.89006 0.88966 0.90285 0.91806 0.86614 0.87354 0.87511 0.87381 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.17 36.01 0.37 -0.43 16 2 C 0.13 1.43 6.78 -82.59 -0.56 0.88 16 3 C -0.18 -1.67 9.74 -39.44 -0.38 -2.06 16 4 C -0.07 -0.71 10.17 -39.28 -0.40 -1.11 16 5 C -0.16 -1.91 9.42 -39.44 -0.37 -2.28 16 6 C 0.14 1.92 6.78 -82.59 -0.56 1.36 16 7 C 0.12 1.86 6.01 36.00 0.22 2.08 16 8 O -0.37 -6.24 8.66 -39.26 -0.34 -6.58 16 9 C 0.46 9.22 7.71 36.01 0.28 9.50 16 10 O -0.47 -11.21 14.77 -18.75 -0.28 -11.49 16 11 C -0.09 -1.68 5.05 -27.88 -0.14 -1.82 16 12 C 0.07 1.58 1.31 -92.93 -0.12 1.46 16 13 H 0.05 1.38 6.24 -51.93 -0.32 1.05 16 14 C -0.58 -15.33 6.41 -34.44 -0.22 -15.55 16 15 H 0.05 1.28 7.82 -52.49 -0.41 0.87 16 16 C 0.03 0.97 5.45 -17.82 -0.10 0.87 16 17 N -0.90 -26.94 13.63 55.43 0.76 -26.18 16 18 Si 1.06 25.80 29.91 -169.99 -5.08 20.71 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.03 -0.70 4.77 -104.62 -0.50 -1.20 16 23 C -0.11 -2.12 8.88 -39.58 -0.35 -2.47 16 24 C -0.13 -2.26 10.05 -39.58 -0.40 -2.65 16 25 C -0.15 -2.55 10.05 -39.58 -0.40 -2.94 16 26 C -0.12 -2.22 10.05 -39.58 -0.40 -2.61 16 27 C -0.13 -2.61 9.67 -39.58 -0.38 -2.99 16 28 N -0.48 -6.75 10.19 -5.74 -0.06 -6.81 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 34 H 0.15 1.72 6.98 -52.48 -0.37 1.36 16 35 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 36 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 37 H 0.09 1.64 7.86 -51.93 -0.41 1.23 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.27 7.96 6.68 -40.82 -0.27 7.69 16 40 H 0.12 2.23 7.80 -52.49 -0.41 1.82 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 44 H 0.11 2.21 7.95 -52.49 -0.42 1.80 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -32.64 377.32 -9.79 -42.43 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.05 Total: 4.19 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -4.42 Total: -21.96 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.70 Total: -32.99 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.62 Total: -18.07 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.64 -9.79 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795982841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.406 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds