Wall clock time and date at job start Tue Mar 31 2020 13:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38228 * 119.61926 * 2 1 4 4 C 1.38625 * 119.15991 * 179.97438 * 3 2 1 5 5 C 1.38666 * 118.42525 * 359.97438 * 4 3 2 6 6 C 1.38186 * 119.16203 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.61878 * 179.97438 * 6 5 4 8 8 O 1.45194 * 109.47256 * 359.97438 * 7 6 5 9 9 C 1.34230 * 116.99915 * 179.97438 * 8 7 6 10 10 O 1.20822 * 120.00167 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99722 * 179.97438 * 9 8 7 12 12 C 1.52998 * 109.47055 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47070 * 54.05643 * 12 11 9 14 14 C 1.50697 * 109.47219 * 294.05851 * 12 11 9 15 15 H 1.07994 * 120.00311 * 330.30427 * 14 12 11 16 16 C 1.37888 * 119.99810 * 150.30362 * 14 12 11 17 17 N 1.31507 * 120.00272 * 6.29033 * 16 14 12 18 18 Si 1.86806 * 119.99715 * 186.56569 * 16 14 12 19 19 H 1.48494 * 109.46979 * 179.72116 * 18 16 14 20 20 H 1.48497 * 109.46980 * 299.72563 * 18 16 14 21 21 H 1.48505 * 109.47065 * 59.72551 * 18 16 14 22 22 C 1.50698 * 109.47439 * 174.05675 * 12 11 9 23 23 C 1.38241 * 119.99754 * 64.22115 * 22 12 11 24 24 C 1.38231 * 119.99710 * 179.79203 * 23 22 12 25 25 C 1.38236 * 120.00470 * 0.43866 * 24 23 22 26 26 C 1.38234 * 119.99567 * 359.81151 * 25 24 23 27 27 C 1.38236 * 120.00247 * 244.49314 * 22 12 11 28 28 N 1.31854 * 119.62137 * 180.24600 * 2 1 3 29 29 H 1.08999 * 109.46917 * 89.99567 * 1 2 3 30 30 H 1.08992 * 109.47193 * 210.00456 * 1 2 3 31 31 H 1.09002 * 109.46858 * 330.00250 * 1 2 3 32 32 H 1.08001 * 120.41910 * 359.95780 * 3 2 1 33 33 H 1.08010 * 120.79238 * 179.97438 * 4 3 2 34 34 H 1.08006 * 120.42557 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47095 * 239.99829 * 7 6 5 36 36 H 1.09003 * 109.47305 * 120.00127 * 7 6 5 37 37 H 1.09003 * 109.46778 * 60.00672 * 11 9 8 38 38 H 1.08998 * 109.47569 * 300.00541 * 11 9 8 39 39 H 0.97003 * 119.99865 * 355.06712 * 17 16 14 40 40 H 1.07999 * 119.99604 * 359.97438 * 23 22 12 41 41 H 1.08000 * 119.99845 * 180.27329 * 24 23 22 42 42 H 1.07997 * 120.00283 * 179.83572 * 25 24 23 43 43 H 1.08003 * 119.99916 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.99786 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.2266 -0.0342 0.0016 6 6 3.4766 -1.1948 0.0016 7 6 4.1727 -2.5314 0.0021 8 8 5.6104 -2.3284 0.0021 9 6 6.3809 -3.4275 0.0031 10 8 5.8710 -4.5228 0.0035 11 6 7.8822 -3.2951 0.0025 12 6 8.5169 -4.6872 0.0032 13 1 8.1184 -5.2686 -0.8283 14 6 8.1987 -5.3837 1.3011 15 1 8.0515 -4.8064 2.2019 16 6 8.0954 -6.7582 1.3387 17 7 8.3950 -7.4695 0.2739 18 14 7.5224 -7.6094 2.8997 19 1 7.4909 -9.0777 2.6798 20 1 8.4596 -7.2947 4.0077 21 1 6.1609 -7.1325 3.2524 22 6 10.0110 -4.5583 -0.1445 23 6 10.7517 -3.9338 0.8417 24 6 12.1228 -3.8193 0.7082 25 6 12.7522 -4.3211 -0.4156 26 6 12.0109 -4.9410 -1.4041 27 6 10.6403 -5.0593 -1.2687 28 7 2.1587 -1.1462 -0.0049 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6508 2.1373 -0.0007 33 1 4.1367 2.1139 0.0001 34 1 5.3057 -0.0805 0.0025 35 1 3.8851 -3.0912 -0.8879 36 1 3.8844 -3.0908 0.8921 37 1 8.1992 -2.7504 0.8918 38 1 8.1988 -2.7523 -0.8881 39 1 8.6195 -7.0253 -0.5587 40 1 10.2594 -3.5381 1.7177 41 1 12.7020 -3.3354 1.4807 42 1 13.8231 -4.2293 -0.5210 43 1 12.5026 -5.3327 -2.2823 44 1 10.0612 -5.5436 -2.0410 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795982841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:16 Heat of formation + Delta-G solvation = -53.624048 kcal Electronic energy + Delta-G solvation = -26211.831400 eV Core-core repulsion = 22478.983183 eV Total energy + Delta-G solvation = -3732.848217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73390 -41.09368 -40.01599 -37.76679 -36.14261 -34.26180 -33.69548 -33.36609 -31.61063 -30.85247 -29.55360 -27.77292 -26.98275 -24.91047 -23.46570 -23.29389 -22.97870 -22.00822 -21.27108 -18.93129 -18.62414 -17.90748 -17.65426 -17.39145 -17.11852 -16.86396 -16.22104 -15.81085 -15.68898 -15.62456 -15.58402 -14.94614 -14.56059 -14.39767 -14.14467 -14.01665 -13.94919 -13.62897 -13.31948 -13.26494 -13.15417 -13.07194 -12.80885 -12.63139 -12.61315 -12.11632 -11.96891 -11.92637 -11.76455 -11.53754 -11.39951 -10.83411 -10.68875 -10.50224 -10.42258 -9.81390 -9.63858 -9.30059 -8.49137 -6.17132 0.03436 0.28313 0.67932 0.71729 1.34604 1.48078 1.49796 1.57938 1.73147 2.58328 2.67598 3.08935 3.12747 3.35131 3.63529 3.85539 3.91725 4.03771 4.09056 4.11181 4.20584 4.24133 4.28151 4.35396 4.37670 4.45488 4.55638 4.58220 4.66806 4.75044 4.77448 4.79787 4.84136 4.96719 5.16193 5.18366 5.19076 5.23821 5.36457 5.39406 5.47298 5.73709 5.75051 5.81057 5.90247 6.19041 6.27593 6.36978 6.72799 6.89899 6.93429 7.59079 8.91216 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003009 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.022149 B = 9303.313371 C =10762.354861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.112 3.888 3 C -0.167 4.167 4 C -0.067 4.067 5 C -0.167 4.167 6 C 0.108 3.892 7 C 0.121 3.879 8 O -0.354 6.354 9 C 0.465 3.535 10 O -0.515 6.515 11 C -0.083 4.083 12 C 0.070 3.930 13 H 0.014 0.986 14 C -0.570 4.570 15 H 0.044 0.956 16 C -0.020 4.020 17 N -0.938 5.938 18 Si 1.097 2.903 19 H -0.288 1.288 20 H -0.266 1.266 21 H -0.285 1.285 22 C -0.056 4.056 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.125 4.125 27 C -0.150 4.150 28 N -0.514 5.514 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.174 0.826 33 H 0.172 0.828 34 H 0.148 0.852 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.260 0.740 40 H 0.116 0.884 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.135 0.865 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 20.920 -1.325 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.026 4.026 3 C -0.186 4.186 4 C -0.093 4.093 5 C -0.187 4.187 6 C -0.028 4.028 7 C 0.046 3.954 8 O -0.271 6.271 9 C 0.308 3.692 10 O -0.401 6.401 11 C -0.120 4.120 12 C 0.051 3.949 13 H 0.032 0.968 14 C -0.608 4.608 15 H 0.062 0.938 16 C -0.219 4.219 17 N -0.575 5.575 18 Si 0.921 3.079 19 H -0.214 1.214 20 H -0.191 1.191 21 H -0.211 1.211 22 C -0.057 4.057 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.160 4.160 26 C -0.143 4.143 27 C -0.169 4.169 28 N -0.227 5.227 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.191 0.809 33 H 0.189 0.811 34 H 0.165 0.835 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.070 0.930 40 H 0.134 0.866 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.153 0.847 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.323 18.317 -0.649 19.388 hybrid contribution 0.359 1.231 -0.845 1.536 sum -5.964 19.548 -1.494 20.492 Atomic orbital electron populations 1.20811 0.86514 1.04419 1.04036 1.21878 0.98495 0.87878 0.94347 1.22409 0.95100 0.99967 1.01109 1.22055 0.94938 0.98565 0.93733 1.22105 1.02606 0.92730 1.01265 1.20512 0.89888 0.94161 0.98227 1.21189 0.76871 0.94183 1.03114 1.86388 1.18697 1.37088 1.84956 1.24195 0.91565 0.81611 0.71830 1.90719 1.75651 1.29114 1.44614 1.21447 0.84702 1.00579 1.05299 1.17773 0.88346 0.91411 0.97320 0.96791 1.21856 1.50455 0.94025 0.94451 0.93798 1.26722 0.93889 0.96228 1.05097 1.70855 1.45092 1.39262 1.02340 0.83191 0.76612 0.75251 0.72809 1.21393 1.19144 1.21147 1.20488 0.97221 0.94757 0.93235 1.21031 0.94468 1.00260 0.98211 1.21410 0.94052 1.00214 0.98555 1.21322 1.00632 0.99811 0.94278 1.21301 0.93187 0.99656 1.00170 1.21130 0.95830 1.01886 0.98024 1.66959 1.08927 1.32146 1.14618 0.89359 0.91474 0.87756 0.80885 0.81065 0.83466 0.90246 0.90548 0.87075 0.87334 0.92967 0.86588 0.83917 0.83574 0.84702 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.17 71.24 0.72 -0.64 16 2 C 0.11 2.33 6.78 42.55 0.29 2.62 16 3 C -0.17 -2.56 9.74 22.36 0.22 -2.34 16 4 C -0.07 -1.12 10.17 22.46 0.23 -0.89 16 5 C -0.17 -3.95 9.42 22.36 0.21 -3.74 16 6 C 0.11 3.16 6.78 42.54 0.29 3.45 16 7 C 0.12 4.07 6.01 71.24 0.43 4.50 16 8 O -0.35 -12.30 8.66 -51.41 -0.45 -12.75 16 9 C 0.46 19.44 7.71 71.24 0.55 19.99 16 10 O -0.51 -26.45 14.77 21.98 0.32 -26.13 16 11 C -0.08 -3.21 5.05 29.85 0.15 -3.06 16 12 C 0.07 3.40 1.31 -12.29 -0.02 3.38 16 13 H 0.01 0.77 6.24 -2.39 -0.01 0.76 16 14 C -0.57 -31.22 6.41 25.60 0.16 -31.05 16 15 H 0.04 2.37 7.82 -2.91 -0.02 2.35 16 16 C -0.02 -1.17 5.45 84.66 0.46 -0.71 16 17 N -0.94 -58.82 13.63 21.45 0.29 -58.52 16 18 Si 1.10 53.39 29.91 68.60 2.05 55.44 16 19 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 C -0.06 -2.46 4.77 -19.86 -0.09 -2.56 16 23 C -0.12 -4.68 8.88 22.27 0.20 -4.48 16 24 C -0.12 -3.95 10.05 22.27 0.22 -3.73 16 25 C -0.14 -4.29 10.05 22.27 0.22 -4.06 16 26 C -0.13 -4.23 10.05 22.27 0.22 -4.01 16 27 C -0.15 -6.20 9.67 22.27 0.22 -5.99 16 28 N -0.51 -14.61 10.19 -172.08 -1.75 -16.37 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.15 3.34 6.98 -2.91 -0.02 3.32 16 35 H 0.08 2.76 8.13 -2.39 -0.02 2.74 16 36 H 0.08 2.74 8.13 -2.39 -0.02 2.72 16 37 H 0.11 3.89 7.86 -2.39 -0.02 3.88 16 38 H 0.11 3.55 8.14 -2.39 -0.02 3.54 16 39 H 0.26 16.31 6.68 -92.71 -0.62 15.69 16 40 H 0.12 4.34 7.80 -2.91 -0.02 4.32 16 41 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 42 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 43 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 44 H 0.10 4.14 7.95 -2.91 -0.02 4.12 16 Total: -1.00 -75.90 377.32 6.30 -69.60 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 1.15 Total: 22.05 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 4.69 Total: -33.32 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -1.46 Total: -74.89 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -0.12 Total: -38.87 kcal Atomic # 14 Polarization: 53.39 SS G_CDS: 2.05 Total: 55.44 kcal Total: -75.90 6.30 -69.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795982841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.976 kcal (2) G-P(sol) polarization free energy of solvation -75.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds