Wall clock time and date at job start Tue Mar 31 2020 13:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 119.61732 * 2 1 4 4 C 1.38632 * 119.16221 * 179.97438 * 3 2 1 5 5 C 1.38672 * 118.41671 * 359.97438 * 4 3 2 6 6 C 1.38181 * 119.16460 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.61483 * 179.97438 * 6 5 4 8 8 O 1.45198 * 109.47466 * 359.97438 * 7 6 5 9 9 C 1.34224 * 117.00245 * 180.02562 * 8 7 6 10 10 O 1.20824 * 120.00022 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99975 * 180.27819 * 9 8 7 12 12 C 1.52998 * 109.47062 * 179.72416 * 11 9 8 13 13 H 1.09005 * 109.46926 * 304.99682 * 12 11 9 14 14 C 1.50702 * 109.47382 * 64.99878 * 12 11 9 15 15 H 1.08000 * 119.99483 * 29.59727 * 14 12 11 16 16 C 1.37875 * 120.00170 * 209.59650 * 14 12 11 17 17 N 1.31515 * 120.00022 * 4.94237 * 16 14 12 18 18 Si 1.86798 * 120.00014 * 184.95223 * 16 14 12 19 19 H 1.48500 * 109.47437 * 59.99227 * 18 16 14 20 20 H 1.48491 * 109.47206 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46902 * 299.99970 * 18 16 14 22 22 C 1.50704 * 109.47497 * 185.00222 * 12 11 9 23 23 C 1.38240 * 119.99348 * 296.77769 * 22 12 11 24 24 C 1.38242 * 119.99501 * 179.80752 * 23 22 12 25 25 C 1.38238 * 119.99840 * 0.39530 * 24 23 22 26 26 C 1.38233 * 120.00125 * 359.85581 * 25 24 23 27 27 C 1.38227 * 120.00363 * 117.04262 * 22 12 11 28 28 N 1.31857 * 119.61707 * 180.25479 * 2 1 3 29 29 H 1.08999 * 109.47169 * 89.99498 * 1 2 3 30 30 H 1.08997 * 109.47059 * 209.99756 * 1 2 3 31 31 H 1.09001 * 109.47379 * 330.00173 * 1 2 3 32 32 H 1.08004 * 120.42395 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.79084 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.41295 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.46907 * 240.00138 * 7 6 5 36 36 H 1.08994 * 109.46947 * 120.00651 * 7 6 5 37 37 H 1.09000 * 109.47133 * 299.72341 * 11 9 8 38 38 H 1.09005 * 109.47243 * 59.72833 * 11 9 8 39 39 H 0.97005 * 119.99831 * 179.97438 * 17 16 14 40 40 H 1.07991 * 120.00535 * 359.97438 * 23 22 12 41 41 H 1.07994 * 119.99599 * 180.22829 * 24 23 22 42 42 H 1.07996 * 119.99400 * 179.83413 * 25 24 23 43 43 H 1.08000 * 119.99581 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.00003 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5763 1.1906 0.0005 5 6 4.2265 -0.0342 0.0016 6 6 3.4765 -1.1948 0.0016 7 6 4.1727 -2.5314 0.0021 8 8 5.6104 -2.3284 0.0021 9 6 6.3810 -3.4274 0.0020 10 8 5.8711 -4.5228 0.0015 11 6 7.8821 -3.2950 0.0082 12 6 8.5168 -4.6871 0.0138 13 1 8.1276 -5.2606 0.8551 14 6 8.1845 -5.3959 -1.2740 15 1 8.0259 -4.8269 -2.1781 16 6 8.0828 -6.7707 -1.2978 17 7 8.1794 -7.4567 -0.1799 18 14 7.8082 -7.6590 -2.9180 19 1 8.9348 -7.3664 -3.8402 20 1 7.7357 -9.1220 -2.6743 21 1 6.5363 -7.1946 -3.5277 22 6 10.0126 -4.5569 0.1439 23 6 10.7399 -3.9235 -0.8465 24 6 12.1115 -3.8005 -0.7253 25 6 12.7566 -4.3180 0.3824 26 6 12.0299 -4.9559 1.3702 27 6 10.6579 -5.0755 1.2508 28 7 2.1586 -1.1463 -0.0051 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6507 2.1373 0.0004 33 1 4.1366 2.1140 0.0001 34 1 5.3056 -0.0804 0.0025 35 1 3.8851 -3.0912 -0.8879 36 1 3.8843 -3.0908 0.8920 37 1 8.2028 -2.7530 -0.8814 38 1 8.1951 -2.7495 0.8986 39 1 8.1075 -8.4240 -0.1967 40 1 10.2363 -3.5225 -1.7136 41 1 12.6792 -3.3025 -1.4973 42 1 13.8284 -4.2243 0.4757 43 1 12.5340 -5.3606 2.2354 44 1 10.0901 -5.5737 2.0227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795982842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:20 Heat of formation + Delta-G solvation = -33.807438 kcal Electronic energy + Delta-G solvation = -26154.456169 eV Core-core repulsion = 22422.467265 eV Total energy + Delta-G solvation = -3731.988904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.52309 -39.64617 -38.37665 -36.10130 -34.06475 -33.29433 -32.78827 -31.54377 -30.04499 -29.33440 -28.41766 -26.74077 -25.59070 -23.08429 -22.57924 -21.93822 -21.62147 -20.46751 -19.28612 -17.11774 -16.77733 -16.63430 -16.19980 -16.01090 -15.78318 -15.63346 -14.80974 -14.65621 -14.41579 -14.14600 -13.91335 -13.45483 -13.29024 -13.19060 -12.68903 -12.52209 -12.44718 -12.38824 -12.14600 -11.90260 -11.76949 -11.68330 -11.65761 -10.89254 -10.81498 -10.63585 -10.38312 -10.30850 -10.11288 -9.89797 -9.63344 -9.55589 -9.45364 -9.12021 -8.88374 -8.40695 -8.07679 -7.68059 -5.99274 -4.00435 0.95411 1.14821 2.25576 2.29108 2.98032 3.11372 3.36236 3.39915 3.42494 3.59611 4.20475 4.46876 4.53235 4.63059 4.70649 4.90569 5.08099 5.25336 5.34274 5.35272 5.38859 5.49041 5.49685 5.55202 5.63984 5.69689 5.73504 5.80933 5.87468 6.01434 6.06025 6.07723 6.10381 6.24220 6.37619 6.46703 6.56789 6.66607 6.85711 6.95962 7.10151 7.28094 7.38282 7.47185 7.80687 7.85489 7.89370 7.98783 8.28756 8.63637 8.99110 9.61954 11.10414 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.002983 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.006040 B = 9382.743859 C =10802.567889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.128 3.872 3 C -0.179 4.179 4 C -0.073 4.073 5 C -0.156 4.156 6 C 0.136 3.864 7 C 0.119 3.881 8 O -0.374 6.374 9 C 0.457 3.543 10 O -0.460 6.460 11 C -0.092 4.092 12 C 0.075 3.925 13 H 0.075 0.925 14 C -0.502 4.502 15 H 0.052 0.948 16 C 0.079 3.921 17 N -0.879 5.879 18 Si 0.886 3.114 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.024 4.024 23 C -0.113 4.113 24 C -0.132 4.132 25 C -0.153 4.153 26 C -0.128 4.128 27 C -0.117 4.117 28 N -0.482 5.482 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.261 0.739 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.040 16.642 2.197 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.010 4.010 3 C -0.199 4.199 4 C -0.099 4.099 5 C -0.175 4.175 6 C -0.001 4.001 7 C 0.044 3.956 8 O -0.293 6.293 9 C 0.298 3.702 10 O -0.341 6.341 11 C -0.130 4.130 12 C 0.057 3.943 13 H 0.093 0.907 14 C -0.539 4.539 15 H 0.071 0.929 16 C -0.125 4.125 17 N -0.515 5.515 18 Si 0.714 3.286 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.025 4.025 23 C -0.131 4.131 24 C -0.150 4.150 25 C -0.171 4.171 26 C -0.146 4.146 27 C -0.136 4.136 28 N -0.194 5.194 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.705 15.290 2.268 16.849 hybrid contribution 0.352 0.014 -1.025 1.084 sum -6.353 15.304 1.243 16.617 Atomic orbital electron populations 1.20705 0.88742 1.03444 1.03103 1.21201 0.96887 0.87962 0.94942 1.21939 0.95087 0.99120 1.03759 1.21631 0.94366 0.98409 0.95463 1.22017 1.02607 0.92218 1.00705 1.20799 0.89293 0.94831 0.95203 1.21191 0.77970 0.92305 1.04165 1.86417 1.17806 1.39116 1.85917 1.24013 0.90930 0.81806 0.73467 1.90753 1.74622 1.27027 1.41730 1.21598 0.85632 1.02867 1.02900 1.17911 0.86102 0.89164 1.01160 0.90692 1.20679 1.48278 0.91459 0.93523 0.92947 1.24817 0.94115 0.97724 0.95847 1.69885 1.48931 1.06950 1.25738 0.86752 0.78671 0.78717 0.84446 1.20295 1.21303 1.20278 1.20636 0.98560 0.91889 0.91414 1.20968 0.93202 1.00161 0.98789 1.20987 0.94969 1.01318 0.97730 1.20817 0.98592 1.01977 0.95738 1.20987 0.94578 1.00342 0.98741 1.21090 0.93873 1.00112 0.98481 1.67035 1.08949 1.29994 1.13377 0.90417 0.90389 0.90739 0.84909 0.84647 0.83420 0.89118 0.89220 0.89255 0.90283 0.92924 0.86733 0.87570 0.87739 0.87561 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.17 36.00 0.37 -0.44 16 2 C 0.13 1.44 6.78 -82.59 -0.56 0.88 16 3 C -0.18 -1.70 9.74 -39.44 -0.38 -2.08 16 4 C -0.07 -0.72 10.18 -39.28 -0.40 -1.12 16 5 C -0.16 -1.92 9.42 -39.44 -0.37 -2.29 16 6 C 0.14 1.94 6.78 -82.59 -0.56 1.38 16 7 C 0.12 1.87 6.01 36.01 0.22 2.09 16 8 O -0.37 -6.29 8.66 -39.24 -0.34 -6.63 16 9 C 0.46 9.17 7.71 36.00 0.28 9.45 16 10 O -0.46 -11.12 14.73 -18.75 -0.28 -11.40 16 11 C -0.09 -1.75 5.06 -27.89 -0.14 -1.89 16 12 C 0.08 1.75 1.69 -92.92 -0.16 1.59 16 13 H 0.07 1.99 6.95 -51.93 -0.36 1.62 16 14 C -0.50 -13.16 6.38 -34.44 -0.22 -13.38 16 15 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 16 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 17 N -0.88 -25.31 12.85 55.43 0.71 -24.59 16 18 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.02 -0.52 4.77 -104.62 -0.50 -1.02 16 23 C -0.11 -2.22 8.86 -39.58 -0.35 -2.57 16 24 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 25 C -0.15 -2.59 10.05 -39.58 -0.40 -2.99 16 26 C -0.13 -2.31 10.05 -39.58 -0.40 -2.70 16 27 C -0.12 -2.41 9.67 -39.59 -0.38 -2.79 16 28 N -0.48 -6.81 10.19 -5.74 -0.06 -6.87 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.15 1.73 6.98 -52.48 -0.37 1.37 16 35 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 36 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 37 H 0.09 1.56 7.76 -51.93 -0.40 1.16 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.11 2.15 7.75 -52.49 -0.41 1.75 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.11 2.37 7.95 -52.49 -0.42 1.95 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -31.64 378.67 -9.88 -41.52 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.15 Total: 3.99 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -4.46 Total: -18.51 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.65 Total: -31.46 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.62 Total: -18.03 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.64 -9.88 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795982842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.714 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds