Wall clock time and date at job start Tue Mar 31 2020 14:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38677 * 120.78972 * 2 1 4 4 C 1.38178 * 119.16441 * 179.97438 * 3 2 1 5 5 N 1.31887 * 120.76163 * 359.97438 * 4 3 2 6 6 C 1.31850 * 121.73019 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.62003 * 179.97438 * 6 5 4 8 8 O 1.45194 * 109.47256 * 179.97438 * 7 6 5 9 9 C 1.34230 * 116.99915 * 179.97438 * 8 7 6 10 10 O 1.20822 * 120.00167 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99722 * 179.97438 * 9 8 7 12 12 C 1.52998 * 109.47055 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47070 * 54.05643 * 12 11 9 14 14 C 1.50697 * 109.47219 * 294.05851 * 12 11 9 15 15 H 1.07994 * 120.00311 * 330.30427 * 14 12 11 16 16 C 1.37888 * 119.99810 * 150.30362 * 14 12 11 17 17 N 1.31507 * 120.00272 * 6.29033 * 16 14 12 18 18 Si 1.86806 * 119.99715 * 186.56569 * 16 14 12 19 19 H 1.48494 * 109.46979 * 179.72116 * 18 16 14 20 20 H 1.48497 * 109.46980 * 299.72563 * 18 16 14 21 21 H 1.48505 * 109.47065 * 59.72551 * 18 16 14 22 22 C 1.50698 * 109.47439 * 174.05675 * 12 11 9 23 23 C 1.38241 * 119.99754 * 64.22115 * 22 12 11 24 24 C 1.38231 * 119.99710 * 179.79203 * 23 22 12 25 25 C 1.38236 * 120.00470 * 0.43866 * 24 23 22 26 26 C 1.38234 * 119.99567 * 359.81151 * 25 24 23 27 27 C 1.38236 * 120.00247 * 244.49314 * 22 12 11 28 28 C 1.38223 * 120.76288 * 0.27389 * 6 5 4 29 29 H 1.08993 * 109.47196 * 89.99674 * 1 2 3 30 30 H 1.09000 * 109.46456 * 209.99517 * 1 2 3 31 31 H 1.09001 * 109.47004 * 329.99597 * 1 2 3 32 32 H 1.08002 * 120.41662 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.61853 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.47095 * 59.99970 * 7 6 5 35 35 H 1.09003 * 109.47305 * 300.00268 * 7 6 5 36 36 H 1.09003 * 109.46778 * 60.00672 * 11 9 8 37 37 H 1.08998 * 109.47569 * 300.00541 * 11 9 8 38 38 H 0.97003 * 119.99865 * 355.06712 * 17 16 14 39 39 H 1.07999 * 119.99604 * 359.97438 * 23 22 12 40 40 H 1.08000 * 119.99845 * 180.27329 * 24 23 22 41 41 H 1.07997 * 120.00283 * 179.83572 * 25 24 23 42 42 H 1.08003 * 119.99916 * 179.97438 * 26 25 24 43 43 H 1.07997 * 119.99786 * 359.97438 * 27 22 12 44 44 H 1.07999 * 120.42439 * 179.70100 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0001 0.0016 6 6 3.5984 -1.1516 0.0016 7 6 4.3801 -2.4400 0.0022 8 8 3.4608 -3.5638 0.0027 9 6 4.0008 -4.7927 0.0028 10 8 5.2017 -4.9249 0.0028 11 6 3.1090 -6.0076 0.0039 12 6 3.9700 -7.2723 0.0044 13 1 4.6734 -7.2326 0.8360 14 6 4.7309 -7.3624 -1.2932 15 1 4.3140 -6.9378 -2.1944 16 6 5.9597 -7.9870 -1.3299 17 7 6.4120 -8.6114 -0.2646 18 14 6.9852 -7.9398 -2.8906 19 1 8.2567 -8.6743 -2.6698 20 1 6.2303 -8.5786 -3.9984 21 1 7.2837 -6.5286 -3.2442 22 6 3.0846 -8.4827 0.1526 23 6 2.1669 -8.7928 -0.8337 24 6 1.3578 -9.9055 -0.6997 25 6 1.4600 -10.7032 0.4247 26 6 2.3741 -10.3902 1.4133 27 6 3.1863 -9.2799 1.2774 28 6 2.2167 -1.1909 -0.0051 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6967 2.1378 0.0004 33 1 4.1583 2.0755 0.0010 34 1 5.0075 -2.4838 0.8924 35 1 5.0082 -2.4843 -0.8875 36 1 2.4792 -5.9967 -0.8857 37 1 2.4803 -5.9961 0.8943 38 1 5.9155 -8.5724 0.5678 39 1 2.0842 -8.1672 -1.7102 40 1 0.6439 -10.1502 -1.4723 41 1 0.8260 -11.5710 0.5305 42 1 2.4537 -11.0132 2.2919 43 1 3.9004 -9.0354 2.0497 44 1 1.6965 -2.1373 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795982885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:14 Heat of formation + Delta-G solvation = -38.339464 kcal Electronic energy + Delta-G solvation = -26313.518243 eV Core-core repulsion = 22581.332815 eV Total energy + Delta-G solvation = -3732.185427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.56126 -39.74103 -38.51810 -36.19249 -34.34601 -34.22452 -32.16599 -31.42448 -30.15900 -29.24174 -28.07693 -27.17105 -25.18852 -23.42772 -22.92189 -21.75444 -21.24788 -20.67124 -19.60417 -17.27808 -16.98853 -16.66581 -16.28935 -16.15980 -15.83613 -15.74153 -15.04149 -14.63135 -14.35388 -14.17695 -13.70504 -13.60402 -13.49407 -13.08916 -12.91904 -12.76969 -12.65713 -12.47646 -12.33980 -12.20972 -11.80332 -11.59514 -11.54220 -11.10949 -10.75258 -10.49207 -10.44939 -10.22630 -10.08822 -9.76741 -9.68225 -9.64935 -9.60599 -9.07407 -8.73383 -8.36479 -8.18368 -7.70871 -6.31570 -4.01319 0.93383 1.08884 2.14493 2.18354 2.91434 2.99830 3.46705 3.52154 3.58329 3.67454 4.25538 4.45326 4.51393 4.55289 4.61275 4.90036 5.02064 5.13513 5.26196 5.28602 5.36434 5.42976 5.46624 5.56036 5.56585 5.58413 5.70092 5.71143 5.73569 5.88551 5.93974 5.96651 6.09954 6.12880 6.25970 6.33843 6.52122 6.54690 6.72417 6.84046 6.98950 7.09333 7.18026 7.31784 7.62934 7.79821 7.81161 8.10697 8.41448 8.51451 8.88580 9.68804 11.08577 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.003216 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.703288 B = 8703.549156 C =10300.331764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.044 4.044 3 C -0.181 4.181 4 C 0.105 3.895 5 N -0.485 5.485 6 C 0.134 3.866 7 C 0.118 3.882 8 O -0.372 6.372 9 C 0.460 3.540 10 O -0.465 6.465 11 C -0.088 4.088 12 C 0.068 3.932 13 H 0.053 0.947 14 C -0.578 4.578 15 H 0.048 0.952 16 C 0.034 3.966 17 N -0.901 5.901 18 Si 1.062 2.938 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.288 1.288 22 C -0.032 4.032 23 C -0.107 4.107 24 C -0.129 4.129 25 C -0.151 4.151 26 C -0.124 4.124 27 C -0.128 4.128 28 C -0.151 4.151 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.158 0.842 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.270 0.730 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.072 13.659 1.990 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.052 4.052 3 C -0.201 4.201 4 C -0.052 4.052 5 N -0.196 5.196 6 C -0.003 4.003 7 C 0.043 3.957 8 O -0.291 6.291 9 C 0.301 3.699 10 O -0.347 6.347 11 C -0.126 4.126 12 C 0.049 3.951 13 H 0.071 0.929 14 C -0.615 4.615 15 H 0.066 0.934 16 C -0.172 4.172 17 N -0.536 5.536 18 Si 0.891 3.109 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.214 1.214 22 C -0.033 4.033 23 C -0.125 4.125 24 C -0.147 4.147 25 C -0.169 4.169 26 C -0.142 4.142 27 C -0.147 4.147 28 C -0.171 4.171 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.175 0.825 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.334 13.057 1.318 16.704 hybrid contribution -2.106 0.605 0.551 2.260 sum -12.440 13.662 1.870 18.572 Atomic orbital electron populations 1.20833 0.90114 1.03375 1.02974 1.20400 0.96931 0.92909 0.94971 1.22029 0.95659 0.98648 1.03778 1.22656 0.91764 0.95574 0.95194 1.67211 1.41503 0.97838 1.13092 1.20803 0.91414 0.92761 0.95346 1.21217 0.89895 0.80311 1.04238 1.86412 1.41337 1.15547 1.85795 1.23961 0.89613 0.83094 0.73256 1.90731 1.16122 1.85784 1.42095 1.21507 0.97586 0.90433 1.03028 1.17949 0.91487 0.85172 1.00482 0.92860 1.21568 1.04705 1.41916 0.93344 0.93371 1.25615 0.95772 0.92361 1.03428 1.70771 1.43036 1.37858 1.01965 0.83644 0.76430 0.76320 0.74514 1.20827 1.21615 1.21421 1.20694 0.92740 0.98269 0.91568 1.20929 0.95789 0.97121 0.98676 1.21016 1.00070 0.96038 0.97573 1.20843 1.00451 1.00164 0.95448 1.20970 0.96967 0.97514 0.98774 1.21062 0.99419 0.96040 0.98145 1.21920 0.94739 0.99369 1.01063 0.90437 0.90744 0.91114 0.84876 0.82525 0.89205 0.88993 0.88979 0.90299 0.91807 0.86614 0.87355 0.87510 0.87379 0.87089 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.06 36.01 0.36 -0.45 16 2 C -0.04 -0.44 5.92 -104.31 -0.62 -1.06 16 3 C -0.18 -1.66 9.82 -39.44 -0.39 -2.04 16 4 C 0.11 1.11 11.18 -17.55 -0.20 0.91 16 5 N -0.49 -6.70 10.27 -9.48 -0.10 -6.80 16 6 C 0.13 1.89 6.78 -82.59 -0.56 1.33 16 7 C 0.12 1.86 6.01 36.00 0.22 2.07 16 8 O -0.37 -6.25 8.66 -39.26 -0.34 -6.59 16 9 C 0.46 9.21 7.71 36.01 0.28 9.49 16 10 O -0.47 -11.20 14.77 -18.75 -0.28 -11.48 16 11 C -0.09 -1.67 5.05 -27.88 -0.14 -1.81 16 12 C 0.07 1.57 1.31 -92.93 -0.12 1.45 16 13 H 0.05 1.38 6.24 -51.93 -0.32 1.05 16 14 C -0.58 -15.29 6.41 -34.44 -0.22 -15.51 16 15 H 0.05 1.27 7.82 -52.49 -0.41 0.86 16 16 C 0.03 0.97 5.45 -17.82 -0.10 0.88 16 17 N -0.90 -26.92 13.63 55.43 0.76 -26.16 16 18 Si 1.06 25.79 29.91 -169.99 -5.08 20.70 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.03 -0.69 4.77 -104.62 -0.50 -1.19 16 23 C -0.11 -2.12 8.88 -39.58 -0.35 -2.47 16 24 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 25 C -0.15 -2.54 10.05 -39.58 -0.40 -2.94 16 26 C -0.12 -2.21 10.05 -39.58 -0.40 -2.61 16 27 C -0.13 -2.61 9.67 -39.58 -0.38 -2.99 16 28 C -0.15 -1.87 9.12 -39.44 -0.36 -2.23 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 35 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 36 H 0.09 1.63 7.86 -51.93 -0.41 1.22 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.27 7.95 6.68 -40.82 -0.27 7.68 16 39 H 0.12 2.22 7.80 -52.49 -0.41 1.81 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 43 H 0.11 2.21 7.95 -52.49 -0.42 1.79 16 44 H 0.15 1.75 6.98 -52.49 -0.37 1.39 16 LS Contribution 377.21 15.07 5.68 5.68 Total: -1.00 -32.59 377.21 -9.68 -42.27 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.05 Total: 4.19 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -4.27 Total: -21.82 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.66 Total: -32.96 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.62 Total: -18.07 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.59 -9.68 -42.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795982885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.933 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds