Wall clock time and date at job start Tue Mar 31 2020 14:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38677 * 120.78972 * 2 1 4 4 C 1.38178 * 119.16441 * 179.97438 * 3 2 1 5 5 N 1.31887 * 120.76163 * 359.97438 * 4 3 2 6 6 C 1.31850 * 121.73019 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.62003 * 179.97438 * 6 5 4 8 8 O 1.45194 * 109.47256 * 179.97438 * 7 6 5 9 9 C 1.34230 * 116.99915 * 179.97438 * 8 7 6 10 10 O 1.20822 * 120.00167 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99722 * 179.97438 * 9 8 7 12 12 C 1.52998 * 109.47055 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47070 * 54.05643 * 12 11 9 14 14 C 1.50697 * 109.47219 * 294.05851 * 12 11 9 15 15 H 1.07994 * 120.00311 * 330.30427 * 14 12 11 16 16 C 1.37888 * 119.99810 * 150.30362 * 14 12 11 17 17 N 1.31507 * 120.00272 * 6.29033 * 16 14 12 18 18 Si 1.86806 * 119.99715 * 186.56569 * 16 14 12 19 19 H 1.48494 * 109.46979 * 179.72116 * 18 16 14 20 20 H 1.48497 * 109.46980 * 299.72563 * 18 16 14 21 21 H 1.48505 * 109.47065 * 59.72551 * 18 16 14 22 22 C 1.50698 * 109.47439 * 174.05675 * 12 11 9 23 23 C 1.38241 * 119.99754 * 64.22115 * 22 12 11 24 24 C 1.38231 * 119.99710 * 179.79203 * 23 22 12 25 25 C 1.38236 * 120.00470 * 0.43866 * 24 23 22 26 26 C 1.38234 * 119.99567 * 359.81151 * 25 24 23 27 27 C 1.38236 * 120.00247 * 244.49314 * 22 12 11 28 28 C 1.38223 * 120.76288 * 0.27389 * 6 5 4 29 29 H 1.08993 * 109.47196 * 89.99674 * 1 2 3 30 30 H 1.09000 * 109.46456 * 209.99517 * 1 2 3 31 31 H 1.09001 * 109.47004 * 329.99597 * 1 2 3 32 32 H 1.08002 * 120.41662 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.61853 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.47095 * 59.99970 * 7 6 5 35 35 H 1.09003 * 109.47305 * 300.00268 * 7 6 5 36 36 H 1.09003 * 109.46778 * 60.00672 * 11 9 8 37 37 H 1.08998 * 109.47569 * 300.00541 * 11 9 8 38 38 H 0.97003 * 119.99865 * 355.06712 * 17 16 14 39 39 H 1.07999 * 119.99604 * 359.97438 * 23 22 12 40 40 H 1.08000 * 119.99845 * 180.27329 * 24 23 22 41 41 H 1.07997 * 120.00283 * 179.83572 * 25 24 23 42 42 H 1.08003 * 119.99916 * 179.97438 * 26 25 24 43 43 H 1.07997 * 119.99786 * 359.97438 * 27 22 12 44 44 H 1.07999 * 120.42439 * 179.70100 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0001 0.0016 6 6 3.5984 -1.1516 0.0016 7 6 4.3801 -2.4400 0.0022 8 8 3.4608 -3.5638 0.0027 9 6 4.0008 -4.7927 0.0028 10 8 5.2017 -4.9249 0.0028 11 6 3.1090 -6.0076 0.0039 12 6 3.9700 -7.2723 0.0044 13 1 4.6734 -7.2326 0.8360 14 6 4.7309 -7.3624 -1.2932 15 1 4.3140 -6.9378 -2.1944 16 6 5.9597 -7.9870 -1.3299 17 7 6.4120 -8.6114 -0.2646 18 14 6.9852 -7.9398 -2.8906 19 1 8.2567 -8.6743 -2.6698 20 1 6.2303 -8.5786 -3.9984 21 1 7.2837 -6.5286 -3.2442 22 6 3.0846 -8.4827 0.1526 23 6 2.1669 -8.7928 -0.8337 24 6 1.3578 -9.9055 -0.6997 25 6 1.4600 -10.7032 0.4247 26 6 2.3741 -10.3902 1.4133 27 6 3.1863 -9.2799 1.2774 28 6 2.2167 -1.1909 -0.0051 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6967 2.1378 0.0004 33 1 4.1583 2.0755 0.0010 34 1 5.0075 -2.4838 0.8924 35 1 5.0082 -2.4843 -0.8875 36 1 2.4792 -5.9967 -0.8857 37 1 2.4803 -5.9961 0.8943 38 1 5.9155 -8.5724 0.5678 39 1 2.0842 -8.1672 -1.7102 40 1 0.6439 -10.1502 -1.4723 41 1 0.8260 -11.5710 0.5305 42 1 2.4537 -11.0132 2.2919 43 1 3.9004 -9.0354 2.0497 44 1 1.6965 -2.1373 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795982885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:14 Heat of formation + Delta-G solvation = -54.785269 kcal Electronic energy + Delta-G solvation = -26314.231386 eV Core-core repulsion = 22581.332815 eV Total energy + Delta-G solvation = -3732.898571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.73159 -41.07330 -40.01388 -37.74598 -36.13941 -35.03334 -33.48323 -33.04400 -31.60962 -30.71855 -28.81760 -28.35371 -26.99813 -24.95147 -24.07802 -23.22401 -22.22848 -22.11183 -21.28161 -18.91401 -18.66823 -17.91443 -17.62556 -17.38393 -17.13773 -16.82302 -16.25651 -15.92383 -15.70186 -15.63350 -15.52506 -14.87857 -14.67300 -14.37672 -14.15158 -14.01632 -13.78518 -13.62796 -13.54761 -13.39981 -13.21445 -13.19798 -12.82179 -12.62686 -12.36042 -12.11520 -11.96765 -11.93725 -11.76399 -11.53679 -11.39857 -10.68752 -10.52574 -10.45757 -10.42033 -9.99374 -9.63873 -9.29972 -8.48842 -6.16818 0.04895 0.25749 0.67932 0.71801 1.34715 1.48314 1.51060 1.58183 1.73359 2.58561 2.69983 3.09299 3.17861 3.35485 3.64497 3.82332 3.92200 4.05199 4.09315 4.11712 4.18556 4.24280 4.28223 4.35949 4.37610 4.43883 4.45555 4.57317 4.68410 4.74166 4.79823 4.83936 4.87339 4.94773 5.03494 5.18864 5.20473 5.31710 5.37161 5.39756 5.48506 5.74183 5.75060 5.81083 5.90385 6.19146 6.27751 6.37062 6.73034 6.89690 6.92933 7.59358 8.91517 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.003216 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.703288 B = 8703.549156 C =10300.331764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.045 4.045 3 C -0.168 4.168 4 C 0.097 3.903 5 N -0.517 5.517 6 C 0.108 3.892 7 C 0.120 3.880 8 O -0.355 6.355 9 C 0.465 3.535 10 O -0.515 6.515 11 C -0.083 4.083 12 C 0.070 3.930 13 H 0.014 0.986 14 C -0.569 4.569 15 H 0.044 0.956 16 C -0.020 4.020 17 N -0.938 5.938 18 Si 1.097 2.903 19 H -0.288 1.288 20 H -0.266 1.266 21 H -0.285 1.285 22 C -0.055 4.055 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.143 4.143 26 C -0.125 4.125 27 C -0.151 4.151 28 C -0.164 4.164 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.173 0.827 33 H 0.187 0.813 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.259 0.741 39 H 0.116 0.884 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.135 0.865 43 H 0.097 0.903 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.641 14.510 1.280 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.053 4.053 3 C -0.188 4.188 4 C -0.060 4.060 5 N -0.229 5.229 6 C -0.028 4.028 7 C 0.046 3.954 8 O -0.272 6.272 9 C 0.308 3.692 10 O -0.401 6.401 11 C -0.120 4.120 12 C 0.051 3.949 13 H 0.032 0.968 14 C -0.607 4.607 15 H 0.062 0.938 16 C -0.219 4.219 17 N -0.576 5.576 18 Si 0.921 3.079 19 H -0.214 1.214 20 H -0.192 1.192 21 H -0.211 1.211 22 C -0.056 4.056 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.161 4.161 26 C -0.143 4.143 27 C -0.169 4.169 28 C -0.184 4.184 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.190 0.810 33 H 0.204 0.796 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.153 0.847 43 H 0.116 0.884 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.954 13.922 0.600 19.721 hybrid contribution -1.144 0.471 0.826 1.488 sum -15.098 14.394 1.427 20.908 Atomic orbital electron populations 1.20912 0.87625 1.04559 1.03975 1.20813 0.98690 0.92242 0.93530 1.22468 0.95117 0.99946 1.01229 1.23264 0.93060 0.95396 0.94296 1.67138 1.42765 0.98616 1.14352 1.20522 0.92043 0.92027 0.98160 1.21211 0.90037 0.80999 1.03194 1.86391 1.40950 1.14914 1.84958 1.24191 0.88982 0.84193 0.71840 1.90718 1.18155 1.86593 1.44604 1.21442 0.97065 0.88227 1.05267 1.17783 0.91703 0.88088 0.97357 0.96769 1.21847 1.04619 1.39841 0.94410 0.93807 1.26717 0.97482 0.92639 1.05080 1.70855 1.43763 1.40612 1.02326 0.83192 0.75406 0.76459 0.72814 1.21408 1.19157 1.21134 1.20476 0.94064 0.97845 0.93205 1.21034 0.96260 0.98493 0.98224 1.21409 0.99570 0.94691 0.98547 1.21322 0.99743 1.00719 0.94278 1.21302 0.96243 0.96604 1.00173 1.21133 1.00321 0.97417 0.98033 1.21984 0.94021 1.00566 1.01832 0.89347 0.90653 0.88915 0.80967 0.79595 0.90149 0.90461 0.87102 0.87369 0.92970 0.86587 0.83916 0.83574 0.84703 0.88445 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.06 71.24 0.72 -0.50 16 2 C -0.04 -0.79 5.92 -19.66 -0.12 -0.91 16 3 C -0.17 -2.54 9.82 22.36 0.22 -2.32 16 4 C 0.10 1.86 11.18 84.67 0.95 2.81 16 5 N -0.52 -14.33 10.27 -183.89 -1.89 -16.22 16 6 C 0.11 3.15 6.78 42.55 0.29 3.44 16 7 C 0.12 4.04 6.01 71.24 0.43 4.47 16 8 O -0.35 -12.37 8.66 -51.41 -0.45 -12.82 16 9 C 0.46 19.44 7.71 71.24 0.55 19.99 16 10 O -0.51 -26.42 14.77 21.98 0.32 -26.09 16 11 C -0.08 -3.20 5.05 29.85 0.15 -3.05 16 12 C 0.07 3.36 1.31 -12.29 -0.02 3.34 16 13 H 0.01 0.79 6.24 -2.39 -0.01 0.77 16 14 C -0.57 -31.13 6.41 25.60 0.16 -30.97 16 15 H 0.04 2.37 7.82 -2.91 -0.02 2.34 16 16 C -0.02 -1.16 5.45 84.66 0.46 -0.70 16 17 N -0.94 -58.77 13.63 21.45 0.29 -58.48 16 18 Si 1.10 53.34 29.91 68.60 2.05 55.39 16 19 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 C -0.06 -2.41 4.77 -19.86 -0.09 -2.50 16 23 C -0.12 -4.69 8.88 22.27 0.20 -4.49 16 24 C -0.12 -3.94 10.05 22.27 0.22 -3.72 16 25 C -0.14 -4.29 10.05 22.27 0.22 -4.06 16 26 C -0.13 -4.23 10.05 22.27 0.22 -4.01 16 27 C -0.15 -6.21 9.67 22.27 0.22 -6.00 16 28 C -0.16 -3.98 9.12 22.36 0.20 -3.78 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.09 0.61 8.10 -2.39 -0.02 0.59 16 32 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.08 2.78 8.13 -2.39 -0.02 2.76 16 35 H 0.08 2.76 8.13 -2.39 -0.02 2.74 16 36 H 0.11 3.89 7.86 -2.39 -0.02 3.87 16 37 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 38 H 0.26 16.30 6.68 -92.71 -0.62 15.68 16 39 H 0.12 4.34 7.80 -2.91 -0.02 4.32 16 40 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 41 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 42 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 43 H 0.10 4.14 7.95 -2.91 -0.02 4.12 16 44 H 0.14 3.42 6.98 -2.91 -0.02 3.40 16 Total: -1.00 -75.46 377.21 6.46 -68.99 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 1.15 Total: 22.19 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 4.99 Total: -32.97 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -1.60 Total: -74.70 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.12 Total: -38.91 kcal Atomic # 14 Polarization: 53.34 SS G_CDS: 2.05 Total: 55.39 kcal Total: -75.46 6.46 -68.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795982885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.206 kcal (2) G-P(sol) polarization free energy of solvation -75.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds